FvH4_1g26500

tRNA m(4)X modification enzyme TRM13 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18312774 .. 18319139
6366 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26500.t1

Sequence Viewer

Length: 1425 bp
ATGGACAATCGCTGCAAGTTTTGGCTCCCTAAAAAGAAGAGATTTTGCGCCAATGTTCCCCTCTCTCCATCACTGTTCTGTGGCAACCACACACCCAGGTCCAACAGCCAGTGGATTCCATGCCCAATAGACCCTTCTCACTCTGTGCTTGAAGAAAATCTTGAAGGACATCTTAGGAGATGCCCATTGCTCAAACAAGTGGAGTCTCTGACTCACGAGCCCTTTTACCAGAAGGGTATCAATGCTGGCCAAGAAGAAGACCAACAAGAAATAGAAGCAGTCGGCAGTGAAAGAGTGGAGGATTCGGCATTGCCTGATGAACCCAAGTCGGGGGAGTTCAATTACATTCTTTCGGAAATGAAGAGGACTGTTTATAGTATGTCTTTGCGTGATTTCTATAAGTTGGTCGAAAAAATTGAGTCTGTTCATAAGTCTATATGCAAGGATATTTGCGAGTCGTATAAGGTGCCGGAAGCTTGTGGAATGTGGATCAACAGAGAGGTAGACAGAAAATTGCCATTTCAAGAGAAACATGTTATGCAGCAGGTGTCGATTCTTGGAAACATGGAAGAGGTTGGAGTAATAAAGAGTTCAGTAGCAAAGGAGAGGGCTGACTGTGATGATGGCAATGGGTTCCCTGTGAGGGATGACTGTGATTATGACAATGGTGTCCCTGCGGTGGTTGAGTTTGGAGCGGGAAGAGGATACTTGACACAAATGCTGGCAGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAACTGAAGGCTGATCGATCCTTGAGACAGAAAGAGAGGTTGATATTGCAACGTTTGAGAATAGACATTGAAGATTTAAACCTGAATGCTGTTGGGACATTGCGGGGAGGTCCTTACATTGCTATCGGTAAACATCTTTGTGGACCTGCAACAGATTTGACTCTGAGATGTTGCCTTGGAGAACAATCCAATCAAAGTAATGGAGGGGGATCTGTTAACCCAAACCTAAGAGGTCTAGCTATTGCCACATGTTGCCATCATCTTTGCCAGTGGAAGCACTACATAAATAAGAAGTATATATTAGACTTGGGGATCACAAAAGAGGAATTCCATGTCATTATATGGTTTACTAGTTGGGCAGTGGATGCTGATCACGGCACAGATCTTCCCGACGTTACTGATTGCGGATTTCATCTTGAATCCATTGAAAAGAAGCAATGCGATGGGGATAATGGGGTTGAAGATGTTGTGAGAAATATGAAATCAGTTGAGAGGGCTGCATTAGGGTTCATGTGCAAGCAGATTATAGACATGGGCAGGCTAATGTGGATGAAGGAACATGGATTAGAAGCGCAGTTTGTCAAATACGTACCATCTACTGTTTCTCCTGAAAACCATTTACTAATTGCCAAAAGCACCAAACTTTCTTGA

Protein Analysis

475

Amino Acids

53.67

Weight (kDa)

6.23

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRM13_CCCH PF11722 3 - 30 1e-11 CCCH zinc finger in TRM13 protein
zf-U11-48K PF05253 38 - 62 5.2e-08 U11-48K-like CHHC zinc finger
TRM13 PF05206 180 - 468 3.8e-82 Methyltransferase TRM13
Methyltransf_32 PF13679 221 - 321 3e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
AasI GACNNNNNNGTC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 535, 928
AccB1I GGYRCC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 504
AciI CCGC 4 cut(s) 677, 695, 877, 1179
AclI AACGTT 1 cut(s) 826
AclWI GGATC 4 cut(s) 497, 786, 991, 1094
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 1100
AcuI CTGAAG 1 cut(s) 800
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 1 cut(s) 1365
AfiI CCNNNNNNNGG 4 cut(s) 329, 330, 643, 679
AflIII ACRYGT 2 cut(s) 532, 1022
AgsI TTSAA 9 cut(s) 152, 164, 340, 524, 761, 845, 1193, 1202, 1235
AhlI ACTAGT 1 cut(s) 1124
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
AluBI AGCT 2 cut(s) 476, 1013
AluI AGCT 2 cut(s) 476, 1013
Alw26I GTCTC 2 cut(s) 210, 793
AlwI GGATC 4 cut(s) 497, 786, 991, 1094
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 12, 541, 1271
ApoI RAATTY 1 cut(s) 1100
AspLEI GCGC 2 cut(s) 50, 1348
AspS9I GGNCC 3 cut(s) 99, 884, 917
AvaII GGWCC 3 cut(s) 99, 884, 917
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 553, 1258
BccI CCATC 5 cut(s) 76, 617, 1038, 1211, 1375
BceAI ACGGC 1 cut(s) 1165
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 1144
BcoDI GTCTC 2 cut(s) 210, 793
BcuI ACTAGT 1 cut(s) 1124
BfaI CTAG 2 cut(s) 1010, 1125
BfuAI ACCTGC 2 cut(s) 535, 928
BfuI GTATCC 1 cut(s) 698
BglII AGATCT 1 cut(s) 1156
BisI GCNGC 3 cut(s) 13, 542, 1272
BlsI GCNGC 3 cut(s) 14, 543, 1273
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 3 cut(s) 99, 884, 917
BmgT120I GGNCC 3 cut(s) 99, 884, 917
BmiI GGNNCC 3 cut(s) 26, 468, 635
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 170, 1129
BpiI GAAGAC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 817
Bsa29I ATCGAT 1 cut(s) 790
BsaAI YACGTR 1 cut(s) 1363
BsaBI GATNNNNATC 1 cut(s) 1143
BsaJI CCNNGG 2 cut(s) 95, 949
BsaXI ACNNNNNCTCC 2 cut(s) 1363, 1393
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 330, 643, 679
Bse1I ACTGG 2 cut(s) 109, 1042
Bse3DI GCAATG 6 cut(s) 185, 308, 634, 872, 891, 1217
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 790
BseDI CCNNGG 2 cut(s) 95, 949
BseGI GGATG 3 cut(s) 652, 1144, 1329
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 4 cut(s) 329, 330, 643, 679
BseMI GCAATG 6 cut(s) 185, 308, 634, 872, 891, 1217
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 2 cut(s) 109, 1042
BseXI GCAGC 2 cut(s) 553, 1258
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 466
BshVI ATCGAT 1 cut(s) 790
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 2 cut(s) 656, 883
BslI CCNNNNNNNGG 4 cut(s) 329, 330, 643, 679
BsmAI GTCTC 2 cut(s) 210, 793
BsmFI GGGAC 2 cut(s) 656, 883
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
BspACI CCGC 4 cut(s) 677, 695, 877, 1179
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 930
BspDI ATCGAT 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 26, 468, 635
BspMI ACCTGC 2 cut(s) 535, 928
BspPI GGATC 4 cut(s) 497, 786, 991, 1094
BspT107I GGYRCC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 695
BsrDI GCAATG 6 cut(s) 185, 308, 634, 872, 891, 1217
BsrI ACTGG 2 cut(s) 109, 1042
BssECI CCNNGG 2 cut(s) 95, 949
BssMI GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 949
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 5 cut(s) 75, 370, 617, 653, 1375
Bst6I CTCTTC 4 cut(s) 32, 356, 564, 694
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstBAI YACGTR 1 cut(s) 1363
BstC8I GCNNGC 4 cut(s) 247, 723, 1292, 1313
BstDEI CTNAG 3 cut(s) 173, 938, 1001
BstF5I GGATG 3 cut(s) 652, 1144, 1329
BstHHI GCGC 2 cut(s) 50, 1348
BstKTI GATC 7 cut(s) 492, 790, 794, 986, 1089, 1147, 1159
BstMAI GTCTC 2 cut(s) 210, 793
BstMBI GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
BstMWI GCNNNNNNNGC 1 cut(s) 1139
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 536, 1026
BstSCI CCNGG 1 cut(s) 95
BstSNI TACGTA 1 cut(s) 1363
BstV1I GCAGC 2 cut(s) 553, 1258
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 983, 1156
BstYI RGATCY 2 cut(s) 983, 1156
Bsu15I ATCGAT 1 cut(s) 790
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 1 cut(s) 790
BtgZI GCGATG 1 cut(s) 1230
BtsCI GGATG 3 cut(s) 652, 1144, 1329
BtsI GCAGTG 2 cut(s) 292, 1140
BtsIMutI CAGTG 5 cut(s) 71, 116, 292, 1049, 1140
BveI ACCTGC 2 cut(s) 535, 928
Cac8I GCNNGC 4 cut(s) 247, 723, 1292, 1313
CfoI GCGC 2 cut(s) 50, 1348
Cfr13I GGNCC 3 cut(s) 99, 884, 917
ClaI ATCGAT 1 cut(s) 790
Csp6I GTAC 1 cut(s) 1364
CviAII CATG 8 cut(s) 120, 533, 565, 1023, 1106, 1285, 1306, 1334
CviQI GTAC 1 cut(s) 1364
DdeI CTNAG 3 cut(s) 173, 938, 1001
DpnI GATC 7 cut(s) 491, 789, 793, 985, 1088, 1146, 1158
DpnII GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
DraI TTTAAA 1 cut(s) 852
DraIII CACNNNGTG 1 cut(s) 145
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 4 cut(s) 32, 356, 564, 694
EarI CTCTTC 4 cut(s) 32, 356, 564, 694
Eco105I TACGTA 1 cut(s) 1363
Eco130I CCWWGG 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 3 cut(s) 99, 884, 917
Eco57I CTGAAG 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 884
EcoRI GAATTC 1 cut(s) 1100
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 8 cut(s) 123, 536, 568, 1026, 1109, 1288, 1309, 1337
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 156, 188
FaqI GGGAC 2 cut(s) 656, 883
FatI CATG 8 cut(s) 119, 532, 564, 1022, 1105, 1284, 1305, 1333
FauI CCCGC 2 cut(s) 688, 870
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 3 cut(s) 13, 542, 1272
FokI GGATG 3 cut(s) 659, 1151, 1336
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 13, 542, 1272
FspBI CTAG 2 cut(s) 1010, 1125
GlaI GCGC 2 cut(s) 49, 1347
GluI GCNGC 3 cut(s) 13, 542, 1272
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 470
HhaI GCGC 2 cut(s) 50, 1348
Hin1II CATG 8 cut(s) 123, 536, 568, 1026, 1109, 1288, 1309, 1337
Hin6I GCGC 2 cut(s) 48, 1346
HinP1I GCGC 2 cut(s) 48, 1346
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 9 cut(s) 115, 203, 211, 302, 419, 455, 553, 934, 1193
HpaI GTTAAC 1 cut(s) 991
HpaII CCGG 1 cut(s) 470
Hpy166II GTNNAC 5 cut(s) 505, 905, 917, 991, 1122
Hpy188I TCNGA 3 cut(s) 210, 355, 939
Hpy188III TCNNGA 7 cut(s) 161, 215, 524, 1163, 1190, 1382, 1422
Hpy8I GTNNAC 5 cut(s) 505, 905, 917, 991, 1122
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 5 cut(s) 144, 158, 226, 775, 1321
HpyCH4III ACNGT 5 cut(s) 75, 370, 617, 653, 1375
HpyCH4IV ACGT 3 cut(s) 826, 1167, 1362
HpyCH4V TGCA 7 cut(s) 15, 441, 541, 823, 923, 1274, 1290
HpyF10VI GCNNNNNNNGC 1 cut(s) 1139
HpyF3I CTNAG 3 cut(s) 173, 938, 1001
HpySE526I ACGT 3 cut(s) 826, 1167, 1362
Hsp92II CATG 8 cut(s) 123, 536, 568, 1026, 1109, 1288, 1309, 1337
HspAI GCGC 2 cut(s) 48, 1346
Ksp22I TGATCA 1 cut(s) 1144
KspAI GTTAAC 1 cut(s) 991
Kzo9I GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
LmnI GCTCC 2 cut(s) 30, 692
Lsp1109I GCAGC 2 cut(s) 553, 1258
LweI GCATC 2 cut(s) 170, 1129
MaeI CTAG 2 cut(s) 1010, 1125
MaeII ACGT 3 cut(s) 826, 1167, 1362
MaeIII GTNAC 1 cut(s) 1168
MalI GATC 7 cut(s) 491, 789, 793, 985, 1088, 1146, 1158
MbiI CCGCTC 1 cut(s) 695
MboI GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
MflI RGATCY 2 cut(s) 983, 1156
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 5 cut(s) 340, 414, 512, 1100, 1398
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 5 cut(s) 205, 212, 428, 464, 928
MmeI TCCRAC 2 cut(s) 126, 556
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 3 cut(s) 741, 851, 990
MslI CAYNNNNRTG 1 cut(s) 912
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 1139
NdeII GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
NlaIII CATG 8 cut(s) 123, 536, 568, 1026, 1109, 1288, 1309, 1337
NlaIV GGNNCC 3 cut(s) 26, 468, 635
NspI RCATGY 2 cut(s) 536, 1026
PaqCI CACCTGC 1 cut(s) 535
PciI ACATGT 2 cut(s) 532, 1022
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 115, 302, 553, 1193
PkrI GCNGC 3 cut(s) 14, 543, 1273
PleI GAGTC 5 cut(s) 205, 211, 427, 463, 928
PpsI GAGTC 5 cut(s) 205, 211, 427, 463, 928
Ppu21I YACGTR 1 cut(s) 1363
PpuMI RGGWCCY 1 cut(s) 884
PscI ACATGT 2 cut(s) 532, 1022
Psp1406I AACGTT 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 884
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 26, 468, 635
PspPI GGNCC 3 cut(s) 99, 884, 917
PspPPI RGGWCCY 1 cut(s) 884
PsuI RGATCY 2 cut(s) 983, 1156
RsaI GTAC 1 cut(s) 1365
RsaNI GTAC 1 cut(s) 1364
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 3 cut(s) 741, 851, 990
SatI GCNGC 3 cut(s) 13, 542, 1272
Sau3AI GATC 7 cut(s) 489, 787, 791, 983, 1086, 1144, 1156
Sau96I GGNCC 3 cut(s) 99, 884, 917
SchI GAGTC 5 cut(s) 205, 212, 428, 464, 928
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 2 cut(s) 170, 1129
SinI GGWCC 3 cut(s) 99, 884, 917
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SnaBI TACGTA 1 cut(s) 1363
SpeI ACTAGT 1 cut(s) 1124
Sse9I AATT 5 cut(s) 340, 414, 512, 1100, 1398
SsiI CCGC 4 cut(s) 677, 695, 877, 1179
SspMI CTAG 2 cut(s) 1010, 1125
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 5 cut(s) 75, 370, 617, 653, 1375
TaiI ACGT 3 cut(s) 829, 1170, 1365
TaqI TCGA 3 cut(s) 408, 551, 790
TasI AATT 5 cut(s) 340, 414, 512, 1100, 1398
TfiI GAWTC 4 cut(s) 115, 302, 553, 1193
Tru1I TTAA 3 cut(s) 741, 851, 990
Tru9I TTAA 3 cut(s) 741, 851, 990
TscAI CASTG 5 cut(s) 78, 116, 292, 1049, 1140
TseI GCWGC 3 cut(s) 12, 541, 1271
TspDTI ATGAA 7 cut(s) 333, 374, 416, 1175, 1268, 1273, 1340
TspRI CASTG 5 cut(s) 78, 116, 292, 1049, 1140
VpaK11BI GGWCC 3 cut(s) 99, 884, 917
XapI RAATTY 1 cut(s) 1100
XceI RCATGY 2 cut(s) 536, 1026
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 2 cut(s) 1010, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.