Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

58733906 .. 58735777

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTAAGCAGCAGGCGGTCGATTCTTGGAAACATGGAAGATTTTGGGGTAACAAAGAGTTTCATAGCAAAGGAGAGGGCTGACTGTGACGATGGCAATGGGTTCCCTGTGAGCGATGACTGTGATTATAGCAATGGTGTCCCAGCAGTGGTTGAGTTTGGAGTGGGAAGAGGATACTTGACACAAATGCTGGCGGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGCTGATCGATCCTTGCGACAGAAAGAGAGTTTGATATTGCAGCGTTTGAGAATTGACATTGTGATGCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

8.49

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM13	PF05206	27 - 104	1.4e-13	Methyltransferase TRM13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	16, 194
AclWI	GGATC	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	9, 292
BbvI	GCAGC	2 cut(s)	21, 304
BccI	CCATC	1 cut(s)	86
BciVI	GTATCC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	10, 293
BlsI	GCNGC	2 cut(s)	11, 294
BmiI	GGNNCC	1 cut(s)	104
BmsI	GCATC	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse3DI	GCAATG	2 cut(s)	103, 139
BseCI	ATCGAT	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	2 cut(s)	103, 139
BseXI	GCAGC	2 cut(s)	21, 304
BseYI	CCCAGC	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	256, 260
BspACI	CCGC	2 cut(s)	16, 194
BspDI	ATCGAT	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	103, 139
BssMI	GATC	2 cut(s)	256, 260
Bst4CI	ACNGT	2 cut(s)	86, 122
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	14, 192
BstKTI	GATC	2 cut(s)	259, 263
BstMBI	GATC	2 cut(s)	256, 260
BstMCI	CGRYCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	21, 304
Bsu15I	ATCGAT	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	14, 192
ClaI	ATCGAT	1 cut(s)	259
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	3 cut(s)	80, 247, 254
CviKI_1	RGCY	3 cut(s)	80, 247, 254
DpnI	GATC	2 cut(s)	258, 262
DpnII	GATC	2 cut(s)	256, 260
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	269
FaeI	CATG	1 cut(s)	37
FaiI	YATR	5 cut(s)	35, 65, 129, 204, 241
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	10, 293
Fsp4HI	GCNGC	2 cut(s)	10, 293
GluI	GCNGC	2 cut(s)	10, 293
GsaI	CCCAGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	86, 122
HpyCH4V	TGCA	2 cut(s)	292, 319
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	256, 260
LpnPI	CCDG	3 cut(s)	120, 156, 176
Lsp1109I	GCAGC	2 cut(s)	21, 304
LweI	GCATC	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	49, 86
MalI	GATC	2 cut(s)	258, 262
MboI	GATC	2 cut(s)	256, 260
MboII	GAAGA	2 cut(s)	50, 180
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	2 cut(s)	69, 164
MseI	TTAA	3 cut(s)	5, 210, 325
MslI	CAYNNNNRTG	1 cut(s)	314
NdeII	GATC	2 cut(s)	256, 260
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	11, 294
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	5, 210, 325
SatI	GCNGC	2 cut(s)	10, 293
Sau3AI	GATC	2 cut(s)	256, 260
SetI	ASST	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	306
SgeI	CNNG	9 cut(s)	25, 38, 46, 119, 155, 190, 203, 256, 277
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	2 cut(s)	16, 194
TaaI	ACNGT	2 cut(s)	86, 122
TaqI	TCGA	2 cut(s)	20, 259
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	5, 210, 325
Tru9I	TTAA	3 cut(s)	5, 210, 325
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	9, 292
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.