Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Reverse (-)

37579473 .. 37588461

Gene Structure 8989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1293200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGAGAATCGATGCAAATTTTGGCTTCCGAAAAAGAAGAGATTTTGTGCCAATGTCCCCCTCAACGACTCTCTGTTTTGTGGGAACCACACAGCGAGGTCGGACGGCGAGTGGGTTCCATGCCCAATTGACCCTTCTCACTCTGTACTTAGCGAAAATCTCGAAGGACATGTGAGGAGGTGCCCTTTACTCAAACAAGTGGAGTCTTTGACCAACCAACCCTTTTACCAAAAGGGTATCAATGCTGGCAAAGAAGACGACCACGATGAAATAGAATCGTTGGGAGTCGAGGGGCCCGGAGATTTGGCATCGTCTAATGAGCCCGTGTTGGGCGCTTTGGACATTGTTTCGGAGATGAAGAGGAATGCTGTTTATAGTATGACTGTGCCTGATTTTTACAAATTAGTTGAAAAAATTGAGTCTGTTCATGAATCTTTGTGTAAGGATATTCGGGAATCGTATAAGGTGACAGAAGCTTGTGCGATGTGGATTAAACGAGAGGTAGACAGAAAAATTCCGTTTCAAGAGAAACATGTTATGCAGCAGGTGTCAATTCTTGGGAACTTGGAAGATTTTGGGGTATTGAGGAATTCGGAAGGAGGAGAGAGGGCTGACTCTGGTGATGGCAATGGTGTTCCTGCGGTGGTTGAGTTTGGAGCGGGGAGAGGATACTTGACACAAATGCTGGCAGATTGTTATGGGATCAAAAAGGTTTTTCTGGTTGAGAGGAAATCGTACAAGTTAAAGGCTGATCGATCCCTGCGTCAGAAGGAGAGCTTGATTTTGCAGCGTTTGAGAATTGACATTGAGGATTTAAACTTGAATGCTGTTGAGTCATTGCGGGGAGGTCAGTACCTGGCTATTGGGAAGCATCTTTGTGGGCCTGCAACAGATTTAACTCTGAGATGTTGCCTTGGGGAACACTTACAAAGCAATATCGAATGGCGCAGTGTTAACCCAAACCTGAGAGGTTTGGCTATAGCAACATGTTGTCATCATCTTTGCCAGTGGAAGCACTACATAAATAAAAAATATTTATTAGAGTTGGGTATCACCAAAGAGGTATTCCATGCAATTACATGGTTTACTAGTTGGGCAGTAGATGCTGATCACGGTGCTAATCTTCCTGATGTTACTGATTGCAGACCGCATTTAGAATCCATTGAAAGGAAGCAATGTGGCACGGACGATGGAGTTGAAGACTGTGTGCGAAATATGAAGGCAGTTGAAAGGGCTGTGTTAGGTTTTATGTGCAAGCAGATTATAGACATGGGTAGGTTAATGTGGATGAAGGAACGAGGATTAGAAGCAGAGTTTGTCAAATACGTTCCGTCAAGCGTTTCTCCTGAAAACCATCTATTGATTGGTAGATGCACCAACCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

463

Amino Acids

52.17

Weight (kDa)

6.27

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TRM13_CCCH	PF11722	3 - 30	2.1e-13	CCCH zinc finger in TRM13 protein
zf-U11-48K	PF05253	38 - 62	1.6e-07	U11-48K-like CHHC zinc finger
TRM13	PF05206	180 - 455	2.7e-82	Methyltransferase TRM13
Methyltransf_32	PF13679	209 - 308	4.6e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	180
AccBSI	CCGCTC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	4 cut(s)	641, 659, 841, 1148
AclWI	GGATC	2 cut(s)	710, 750
AcsI	RAATTY	3 cut(s)	17, 513, 589
AfaI	GTAC	3 cut(s)	147, 737, 854
AfiI	CCNNNNNNNGG	2 cut(s)	329, 1167
AflIII	ACRYGT	3 cut(s)	169, 532, 986
AgsI	TTSAA	6 cut(s)	410, 524, 823, 1166, 1199, 1229
AhlI	ACTAGT	1 cut(s)	1088
AjnI	CCWGG	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	4 cut(s)	118, 150, 1049, 1081
AluBI	AGCT	2 cut(s)	476, 777
AluI	AGCT	2 cut(s)	476, 777
AlwI	GGATC	2 cut(s)	710, 750
AlwNI	CAGNNNCTG	1 cut(s)	856
AoxI	GGCC	2 cut(s)	293, 881
ApaI	GGGCCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	541, 787
ApoI	RAATTY	3 cut(s)	17, 513, 589
AspLEI	GCGC	2 cut(s)	335, 948
AspS9I	GGNCC	3 cut(s)	293, 294, 881
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	478, 632, 1045
BaeGI	GKGCMC	2 cut(s)	185, 297
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	297, 324
BbsI	GAAGAC	2 cut(s)	261, 1206
BbvI	GCAGC	2 cut(s)	553, 799
BccI	CCATC	3 cut(s)	617, 1184, 1362
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	1088
BfaI	CTAG	1 cut(s)	1089
BfmI	CTRYAG	1 cut(s)	978
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	2 cut(s)	542, 788
BlsI	GCNGC	2 cut(s)	543, 789
Bme1390I	CCNGG	2 cut(s)	297, 857
BmgT120I	GGNCC	3 cut(s)	293, 294, 881
BmiI	GGNNCC	5 cut(s)	86, 117, 182, 294, 295
BmrFI	CCNGG	2 cut(s)	297, 857
BmsI	GCATC	5 cut(s)	2, 317, 880, 1093, 1361
BpiI	GAAGAC	2 cut(s)	261, 1206
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	2 cut(s)	10, 754
BsaBI	GATNNNNATC	1 cut(s)	1107
BsaJI	CCNNGG	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 1167
Bse1I	ACTGG	1 cut(s)	1006
Bse3DI	GCAATG	3 cut(s)	634, 836, 1181
Bse8I	GATNNNNATC	1 cut(s)	1107
BseBI	CCWGG	1 cut(s)	857
BseCI	ATCGAT	2 cut(s)	10, 754
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	1 cut(s)	1293
BseJI	GATNNNNATC	1 cut(s)	1107
BseLI	CCNNNNNNNGG	2 cut(s)	329, 1167
BseMI	GCAATG	3 cut(s)	634, 836, 1181
BseMII	CTCAG	2 cut(s)	893, 956
BseNI	ACTGG	1 cut(s)	1006
BseRI	GAGGAG	2 cut(s)	190, 615
BseSI	GKGCMC	2 cut(s)	185, 297
BseXI	GCAGC	2 cut(s)	553, 799
BshFI	GGCC	2 cut(s)	295, 883
BshNI	GGYRCC	1 cut(s)	180
BshVI	ATCGAT	2 cut(s)	10, 754
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	329, 1167
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	370, 829
BsnI	GGCC	2 cut(s)	295, 883
Bsp120I	GGGCCC	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	185, 297, 324
Bsp143I	GATC	4 cut(s)	702, 751, 755, 1108
BspACI	CCGC	4 cut(s)	641, 659, 841, 1148
BspANI	GGCC	2 cut(s)	295, 883
BspCNI	CTCAG	2 cut(s)	894, 957
BspDI	ATCGAT	2 cut(s)	10, 754
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	5 cut(s)	86, 117, 182, 294, 295
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	710, 750
BspT107I	GGYRCC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	659
BsrDI	GCAATG	3 cut(s)	634, 836, 1181
BsrI	ACTGG	1 cut(s)	1006
BssECI	CCNNGG	1 cut(s)	913
BssMI	GATC	4 cut(s)	702, 751, 755, 1108
BssT1I	CCWWGG	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	3 cut(s)	385, 1115, 1205
Bst6I	CTCTTC	2 cut(s)	32, 353
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstC8I	GCNNGC	4 cut(s)	247, 687, 885, 1256
BstDEI	CTNAG	3 cut(s)	149, 902, 965
BstF5I	GGATG	1 cut(s)	1293
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 948
BstKTI	GATC	4 cut(s)	705, 754, 758, 1111
BstMBI	GATC	4 cut(s)	702, 751, 755, 1108
BstMWI	GCNNNNNNNGC	1 cut(s)	1103
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	3 cut(s)	173, 536, 990
BstSCI	CCNGG	2 cut(s)	295, 855
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	2 cut(s)	185, 297
BstV1I	GCAGC	2 cut(s)	553, 799
BstV2I	GAAGAC	2 cut(s)	261, 1206
Bsu15I	ATCGAT	2 cut(s)	10, 754
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	295, 883
BsuTUI	ATCGAT	2 cut(s)	10, 754
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	1293
BtsI	GCAGTG	1 cut(s)	955
BtsIMutI	CAGTG	2 cut(s)	955, 1013
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	4 cut(s)	247, 687, 885, 1256
CaiI	CAGNNNCTG	1 cut(s)	856
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	2 cut(s)	335, 948
Cfr13I	GGNCC	3 cut(s)	293, 294, 881
ClaI	ATCGAT	2 cut(s)	10, 754
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	3 cut(s)	146, 736, 853
CviAII	CATG	8 cut(s)	120, 170, 428, 533, 987, 1070, 1080, 1270
CviQI	GTAC	3 cut(s)	146, 736, 853
DdeI	CTNAG	3 cut(s)	149, 902, 965
DpnI	GATC	4 cut(s)	704, 753, 757, 1110
DpnII	GATC	4 cut(s)	702, 751, 755, 1108
DraI	TTTAAA	1 cut(s)	816
Eam1104I	CTCTTC	2 cut(s)	32, 353
EarI	CTCTTC	2 cut(s)	32, 353
Eco130I	CCWWGG	1 cut(s)	913
Eco24I	GRGCYC	2 cut(s)	297, 324
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	855
EcoT14I	CCWWGG	1 cut(s)	913
EcoT38I	GRGCYC	2 cut(s)	297, 324
ErhI	CCWWGG	1 cut(s)	913
FaeI	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	8 cut(s)	119, 169, 427, 532, 986, 1069, 1079, 1269
FauI	CCCGC	2 cut(s)	652, 834
FbaI	TGATCA	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	542, 788
FokI	GGATG	1 cut(s)	1300
FriOI	GRGCYC	2 cut(s)	297, 324
Fsp4HI	GCNGC	2 cut(s)	542, 788
FspBI	CTAG	1 cut(s)	1089
GlaI	GCGC	2 cut(s)	334, 947
GluI	GCNGC	2 cut(s)	542, 788
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	295, 883
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	2 cut(s)	335, 948
Hin1II	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
Hin6I	GCGC	2 cut(s)	333, 946
HinP1I	GCGC	2 cut(s)	333, 946
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	474
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	3 cut(s)	478, 632, 1045
Hpy166II	GTNNAC	3 cut(s)	505, 955, 1086
Hpy188I	TCNGA	6 cut(s)	30, 103, 352, 595, 768, 903
Hpy188III	TCNNGA	7 cut(s)	161, 428, 452, 524, 1127, 1346, 1386
Hpy8I	GTNNAC	3 cut(s)	505, 955, 1086
HpyAV	CCTTC	6 cut(s)	144, 158, 590, 763, 1213, 1285
HpyCH4III	ACNGT	3 cut(s)	385, 1115, 1205
HpyCH4IV	ACGT	1 cut(s)	1326
HpyCH4V	TGCA	8 cut(s)	15, 541, 787, 887, 1073, 1143, 1254, 1374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1103
HpyF3I	CTNAG	3 cut(s)	149, 902, 965
HpySE526I	ACGT	1 cut(s)	1326
Hsp92II	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
HspAI	GCGC	2 cut(s)	333, 946
Ksp22I	TGATCA	1 cut(s)	1108
KspAI	GTTAAC	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	702, 751, 755, 1108
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	553, 799
LweI	GCATC	5 cut(s)	2, 317, 880, 1093, 1361
MaeI	CTAG	1 cut(s)	1089
MaeII	ACGT	1 cut(s)	1326
MaeIII	GTNAC	2 cut(s)	466, 1132
MalI	GATC	4 cut(s)	704, 753, 757, 1110
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	4 cut(s)	702, 751, 755, 1108
MboII	GAAGA	6 cut(s)	49, 266, 370, 581, 1115, 1211
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	3 cut(s)	185, 297, 324
MluCI	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
MlyI	GAGTC	6 cut(s)	62, 212, 294, 428, 608, 842
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
MslI	CAYNNNNRTG	1 cut(s)	876
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	297, 857
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	370, 829
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	1 cut(s)	1103
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	702, 751, 755, 1108
NlaIII	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
NlaIV	GGNNCC	5 cut(s)	86, 117, 182, 294, 295
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	3 cut(s)	173, 536, 990
PagI	TCATGA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	3 cut(s)	169, 532, 986
PcsI	WCGNNNNNNNCGW	1 cut(s)	760
PctI	GAATGC	2 cut(s)	370, 829
PfeI	GAWTC	5 cut(s)	7, 275, 431, 455, 1157
PkrI	GCNGC	2 cut(s)	543, 789
PleI	GAGTC	6 cut(s)	62, 211, 293, 427, 608, 841
PpsI	GAGTC	6 cut(s)	62, 211, 293, 427, 608, 841
PscI	ACATGT	3 cut(s)	169, 532, 986
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	5 cut(s)	86, 117, 182, 294, 295
PspOMI	GGGCCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	293, 294, 881
PstNI	CAGNNNCTG	1 cut(s)	856
RsaI	GTAC	3 cut(s)	147, 737, 854
RsaNI	GTAC	3 cut(s)	146, 736, 853
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
SatI	GCNGC	2 cut(s)	542, 788
Sau3AI	GATC	4 cut(s)	702, 751, 755, 1108
Sau96I	GGNCC	3 cut(s)	293, 294, 881
SchI	GAGTC	6 cut(s)	62, 212, 294, 428, 608, 842
ScrFI	CCNGG	2 cut(s)	297, 857
SduI	GDGCHC	3 cut(s)	185, 297, 324
SfaNI	GCATC	5 cut(s)	2, 317, 880, 1093, 1361
SfcI	CTRYAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	876
SpeI	ACTAGT	1 cut(s)	1088
Sse9I	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
SsiI	CCGC	4 cut(s)	641, 659, 841, 1148
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	295, 855
StyI	CCWWGG	1 cut(s)	913
TaaI	ACNGT	3 cut(s)	385, 1115, 1205
TaiI	ACGT	1 cut(s)	1329
TaqI	TCGA	5 cut(s)	10, 162, 288, 754, 939
TasI	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	5 cut(s)	7, 275, 431, 455, 1157
Tru1I	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
Tru9I	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
TscAI	CASTG	2 cut(s)	955, 1013
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	541, 787
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	6 cut(s)	282, 371, 416, 444, 1232, 1304
TspGWI	ACGGA	3 cut(s)	507, 1199, 1320
TspRI	CASTG	2 cut(s)	955, 1013
XapI	RAATTY	3 cut(s)	17, 513, 589
XceI	RCATGY	3 cut(s)	173, 536, 990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1361
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.