Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

58597143 .. 58599569

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG446100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGATTTTGGGGTAATAAAGAGTTTCATAGCAAAGGAGAGGGCTGACTGTGACGATGGCAATGGGTTCCCTGTGAGCGATGACTGTGATTATAGCAATGGTGTCCCAGCAGTGGTTGATTTTGGAGTGGGGAGAGGATACTTGACACAAATGCTGGCGGATTGTTATGGCATTAAAAGGGTCTTTTTGATTGAAAGGAAGTCATACAAGCTGAAGTCAATACATCCTATTCCACCAGTAAACGTACCAGTGACAAAGACTAGTTCTCAGGTAACCATAAGCTCTCCTCCAAATTGCCATCCAACAGGCCGGCCTACTGCAAGAAAGAATCTAAATCACAAGAAATCGCGAAGGGTCAACTCCAATGCAGGCCAATGCAGGAGATGCAAGGGTCTTGGATCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

136

Amino Acids

14.92

Weight (kDa)

9.48

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	352
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	263
AluBI	AGCT	2 cut(s)	214, 285
AluI	AGCT	2 cut(s)	214, 285
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	3 cut(s)	310, 314, 373
BccI	CCATC	2 cut(s)	53, 309
BciVI	GTATCC	1 cut(s)	134
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	239, 251
Bse3DI	GCAATG	2 cut(s)	70, 106
BseGI	GGATG	2 cut(s)	226, 301
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	70, 106
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	239, 251
BseRI	GAGGAG	1 cut(s)	279
BseYI	CCCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	312, 316, 375
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	312, 316, 375
Bsp143I	GATC	1 cut(s)	401
Bsp68I	TCGCGA	1 cut(s)	352
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	3 cut(s)	312, 316, 375
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	70, 106
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	239, 251
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	53, 89
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	159, 314, 373
BstDEI	CTNAG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	226, 301
BstFNI	CGCG	1 cut(s)	352
BstKTI	GATC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	312, 316, 375
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	226, 301
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 258
BtuMI	TCGCGA	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	159, 314, 373
Cfr10I	RCCGGY	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	248
CviJI	RGCY	6 cut(s)	47, 214, 285, 312, 316, 375
CviKI_1	RGCY	6 cut(s)	47, 214, 285, 312, 316, 375
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
FaiI	YATR	5 cut(s)	32, 96, 171, 208, 281
FaqI	GGGAC	1 cut(s)	92
FokI	GGATG	2 cut(s)	213, 288
FseI	GGCCGGCC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	312, 316, 375
HapII	CCGG	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	244, 361
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	2 cut(s)	244, 361
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	53, 89
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	323, 371, 381, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	401
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	53, 253, 274
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	36, 131, 300
MroNI	GCCGGC	1 cut(s)	312
MseI	TTAA	2 cut(s)	177, 409
MspI	CCGG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	387
NaeI	GCCGGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	401
NgoMIV	GCCGGC	1 cut(s)	312
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	53, 253
NruI	TCGCGA	1 cut(s)	352
PdiI	GCCGGC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	331
PspEI	GGTNACC	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	401
RigI	GGCCGGCC	1 cut(s)	316
RruI	TCGCGA	1 cut(s)	352
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	177, 409
Sau3AI	GATC	1 cut(s)	401
SetI	ASST	4 cut(s)	216, 249, 276, 287
SfaNI	GCATC	1 cut(s)	377
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	53, 89
TaiI	ACGT	1 cut(s)	249
TasI	AATT	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	177, 409
Tru9I	TTAA	2 cut(s)	177, 409
TscAI	CASTG	2 cut(s)	120, 258
TseFI	GTSAC	2 cut(s)	53, 253
Tsp45I	GTSAC	2 cut(s)	53, 253
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	120, 258
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.