Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

34073036 .. 34074167

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGACTCGATGCAGGTTTTGGCTTCCGAAAAAGAAGAGATTTTGTGCCAATGTCCCCCTCAACGATTCTCTATGGTTTCTGATTGGTAGGTTTTGCGGGAACCACATGGAGAGGCCGGATGGCGAGGGGGTTCCATGCCCAATTGACCCTTCTCACTGTGTACTTGGCGAAAATCTGGAAGCACATGTTAGGAGGTGCCCTTTACCCAAACAAGTGGAGTCTTTGACCCACCAACCCTTTTACCAAAAGGGTATCAATGCTGGCGAAGAAGATGACCATGATGAAATTGAATCGTTGGGAGTCGAGGGGACCGGAGATTTGGCATTGTCTAATGGTCCCGTGTTGGGAGCTGTGGATAACATTGTTTCGGAGATGAAGAGGAATGCTGTTTATAATATGACTGATATTGGGGAGTCGTATAAGGTGACGGAAGCTTGTGGGATGTGGATTAAACGAGAGGTAGATAGGTGTCAATTCTTGGGAACTCGGAAGATTTTGGGGGCATTGAAGAATTCGGAAGGAGGAGAGAGGGCTGACTTTGCTGATGTGAATGGTGTTCCTGCGGTGGTTGAGTTTGGAGCGGGGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

199

Amino Acids

21.86

Weight (kDa)

5.3

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TRM13_CCCH	PF11722	4 - 37	2.1e-11	CCCH zinc finger in TRM13 protein
zf-U11-48K	PF05253	45 - 68	9.4e-06	U11-48K-like CHHC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	584
AciI	CCGC	3 cut(s)	99, 566, 584
AcsI	RAATTY	1 cut(s)	514
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	293, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AluBI	AGCT	2 cut(s)	353, 437
AluI	AGCT	2 cut(s)	353, 437
AoxI	GGCC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AspS9I	GGNCC	2 cut(s)	312, 338
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	312, 338
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	198
BccI	CCATC	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	312, 338
BmgT120I	GGNCC	2 cut(s)	312, 338
BmiI	GGNNCC	5 cut(s)	104, 135, 200, 313, 340
BmsI	GCATC	1 cut(s)	2
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	127, 450
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	119, 315
BslFI	GGGAC	3 cut(s)	41, 324, 325
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmFI	GGGAC	3 cut(s)	41, 324, 325
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	203
BspACI	CCGC	3 cut(s)	99, 566, 584
BspANI	GGCC	1 cut(s)	118
BspLI	GGNNCC	5 cut(s)	104, 135, 200, 313, 340
BspMI	ACCTGC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	32, 374
BstC8I	GCNNGC	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	127, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	127, 450
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	312, 338
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	4 cut(s)	109, 138, 188, 281
CviJI	RGCY	5 cut(s)	25, 118, 353, 437, 536
CviKI_1	RGCY	5 cut(s)	25, 118, 353, 437, 536
CviQI	GTAC	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	32, 374
EarI	CTCTTC	2 cut(s)	32, 374
Eco47I	GGWCC	2 cut(s)	312, 338
EcoRI	GAATTC	1 cut(s)	514
FaeI	CATG	4 cut(s)	112, 141, 191, 284
FaiI	YATR	8 cut(s)	76, 110, 139, 189, 282, 396, 401, 423
FaqI	GGGAC	3 cut(s)	41, 324, 325
FatI	CATG	4 cut(s)	108, 137, 187, 280
FauI	CCCGC	2 cut(s)	92, 577
FokI	GGATG	2 cut(s)	134, 457
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	119, 315
Hin1II	CATG	4 cut(s)	112, 141, 191, 284
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	6 cut(s)	7, 68, 221, 293, 303, 416
HpaII	CCGG	2 cut(s)	119, 315
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	5 cut(s)	30, 84, 373, 492, 520
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	162, 515
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	112, 141, 191, 284
LmnI	GCTCC	2 cut(s)	350, 581
LpnPI	CCDG	5 cut(s)	132, 164, 249, 328, 576
LweI	GCATC	1 cut(s)	2
MaeIII	GTNAC	1 cut(s)	427
MbiI	CCGCTC	1 cut(s)	584
MboII	GAAGA	6 cut(s)	49, 281, 284, 391, 505, 523
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	4 cut(s)	144, 288, 476, 514
MlyI	GAGTC	3 cut(s)	230, 312, 425
MseI	TTAA	1 cut(s)	453
MspI	CCGG	2 cut(s)	119, 315
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	542
NlaIII	CATG	4 cut(s)	112, 141, 191, 284
NlaIV	GGNNCC	5 cut(s)	104, 135, 200, 313, 340
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	68, 293
PleI	GAGTC	3 cut(s)	229, 311, 424
PpsI	GAGTC	3 cut(s)	229, 311, 424
PscI	ACATGT	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	396
PspN4I	GGNNCC	5 cut(s)	104, 135, 200, 313, 340
PspPI	GGNCC	2 cut(s)	312, 338
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	453
Sau96I	GGNCC	2 cut(s)	312, 338
SchI	GAGTC	3 cut(s)	230, 312, 425
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	8 cut(s)	20, 95, 200, 355, 429, 439, 465, 473
SfaNI	GCATC	1 cut(s)	2
SinI	GGWCC	2 cut(s)	312, 338
Sse9I	AATT	4 cut(s)	144, 288, 476, 514
SsiI	CCGC	3 cut(s)	99, 566, 584
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	10, 306
TasI	AATT	4 cut(s)	144, 288, 476, 514
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	68, 293
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	300, 392
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	312, 338
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.