Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

16939579 .. 16951597

Gene Structure 12019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGTCTGCTCAAGGCTTTGGCTACTGGCTTCAATGGCAAGTGGGACTTTGTGCTTTGATTATTACAGGTCCTTCTATTATAGCTCTCAAATATGTCAAGAATTCAAAGCAAGAACCTTTGAATTCTGTTGACTTGTGGAGTACATGTTGGAAATCAGTGGATCCTATTTGGCTTCTGTTCTACAGAGCTTTCGCGTTCCTTTGCTTGGCCAAAATGCTCTACGACTTTTTCGCCATATTCCCAATGTTCACACTTGTTTTCTACACCCAGTGGACTTTTATACTGGTTACTCTCTATTTTGGGCTGGGGACGATTATATCTGCTCATGGATGTTTTGTTGCAAGGAATGAATTGAAGGGCAAACCCAAGTCAAAAAGCCAACAAAAAGCAGGATTCTTTGGAAATCTAATGCAGATTATGTATCTGGTAACTGAAAGCTTTCAGCTAATTAACATGTTTTTTGAAACTAAACAGACAAGTGCAGGTGCTTCTATGCTTACAGATATAGTTTTTTGGTGTCTCATACTTCCATTTCTAACCAGTGTGGAATTTGAAATGACCCTGTTGATAGGAGCTATGCATGCTGTAAATGCCGGTTTTCTTATTGTGGATACCACTCTCAATAGACTTCCGTTTCCTTCATTAGGGTTTGTATACTTTGTGCTCTTTGGCTCCCTCTACATCACTTTCCAATGGACCATTCACGCCCTTGGTGTTGACTGGTGGCCATATCCTTTTCTAGAGCTAAATACACCTTGGGCGCCTGTATGTTATTTTGGGTTGGCATTGGTTCATATTCCCTGTTATTGGATATATACCTTGGTCGTGAAGGCAAAAGACCAGAGTGAGAGGCCACAGGTAGCTCATTTTGCAAAGCTCAAGACAAACACGAGGACCAAGGAGTCCCCGGCTGCGAATAGGGAACTTAACAATGCGGATAAGGAGTCAAGTAGTGTAAAAGGTGCTCCGGACCCCAACCATCCGTGCGCCAAGGCAAGGCTGTGGCTGCGTTTCGGCCATTTCGATTATTCGATCAATGAGGATTTGAGCGTTCGATCGACTTGTGGTTTTGTCATATTGATTGTAGAAGTATTCTGGAGGCTTTGGGTGGTCTCGGATGTGGTATGTGAAAAGTGTGTTGAGTGGATTGCGGTGATTAATGCTTCTCTCGATTTGTGTGTGAAGACGCAGCGGGATTCGAGCTCTGTGCTTGAAGAAAATCTTGAAGGACATCTTAGGAGATGCCCATTGCTCAAACAAGTGGAGTCTCTGACTCACCAGCCCTTTTACCAAAAGGGTATCAATGCTGGCAAAGAAGAAGACCAACAAGAAATAGAAACAGTCAGTAGTACTAGATTGGAGGATTCCGCATTGGCTGATGACCCCAAGTCGGAGGCTTTTGGCTACATTCTTTCAGAAATGAAGAGGACTGTTTATAGTATGTCTGTGCCTGATTTCTATAAATTAATTGAAAAAATTGAGTCTGTTCATAAGTCCATATGCAAGGATATTCAGGAGTCGTATAAGGTACCGGAAGCTTGCGGAATGTGGATCAAAAGAGAGGTAGACAGAAAATTGCCATTTCAAGAGAAACATGTTATGCAGCAGGTGTCGATTCTTGGAAACATGGAAGACTTTGGGTTAATAAAGAGTTCCATAGCAAATGAGAGGGCTGACTGTGATGATGGCAACGGTTTCCCTGTGAGGGATGACTGTGATTATAGCAATGGTGTCCCTGCGGTGGTTGAGTTTGGAGCGGGGAGAGGATACTTGACACAAATGCTGGCAGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGCTGATCGATCCTTGCGACAGAAAGAGAGCTTGATACTGCAACGTTTGAGAATTGACATTGAGGATTTAAACCTGAATGCCGTTGAGTCATTGCGGGAAGGTCCTTTCATTTCTATCGGTAAACATCTTTGTGGGCCTGCAACAGATTTGACTCTGAGATGTTGCCTTGGGGAACAATCCAATCAAAGTAATGGTGGAGGGTGTGTCAACCCGAACCTAAGAGGTCTAGCTATTGCCACATGTTGCCATCATCTTTGCCAGTGGAAGCACTACATAAATAAGAAGTATCTATTAGAGTTGGGGATCACAAAAGAGGAATTCCATGTCATTATATGGTTCACTAGTTGGGCAGTGGATGCTGATCATGGCACAGATCTTCCTGACGTTACTGTTTGCGGATTTCATCTTGAATCCATCGGAAAGAAGCAATCCCATGGAGATAATGGAGTTGAAGACGTTGTGAGAAATATGAAAGGAGTTGAAAGGGCTGCGTTAGGGTTCATGTGCAAGCAGATTATAGACACGGGTAGGTTAATGTGGATGAAGGAACATGGATTGGAAGCGCAGTTTGTCAAATACGTACCATCTAGTGTCTCCCCTGAAAACCACTTACTAATCGCTAGAAGCACCATTCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

828

Amino Acids

93.93

Weight (kDa)

6.42

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM13	PF05206	534 - 822	4.5e-81	Methyltransferase TRM13
Methyltransf_32	PF13679	575 - 683	3.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	473, 1597
AasI	GACNNNNNNGTC	1 cut(s)	901
Acc36I	ACCTGC	2 cut(s)	473, 1597
Acc65I	GGTACC	1 cut(s)	1528
AccB1I	GGYRCC	2 cut(s)	760, 1528
AccBSI	CCGCTC	1 cut(s)	1757
AccI	GTMKAC	2 cut(s)	654, 1566
AccII	CGCG	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	967
AciI	CCGC	9 cut(s)	935, 1151, 1192, 1368, 1542, 1739, 1757, 1939, 2241
AclI	AACGTT	1 cut(s)	1888
AclWI	GGATC	5 cut(s)	155, 168, 1559, 1848, 2156
AcoI	YGGCCR	3 cut(s)	207, 725, 1015
AcsI	RAATTY	4 cut(s)	100, 121, 548, 2162
AcuI	CTGAAG	1 cut(s)	1862
AcyI	GRCGYC	1 cut(s)	761
AdeI	CACNNNGTG	1 cut(s)	270
AfaI	GTAC	4 cut(s)	142, 1351, 1530, 2427
AfiI	CCNNNNNNNGG	7 cut(s)	205, 644, 807, 996, 1390, 1705, 1741
AflIII	ACRYGT	4 cut(s)	143, 453, 1594, 2084
AhdI	GACNNNNNGTC	1 cut(s)	1387
AhlI	ACTAGT	1 cut(s)	2186
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
Alw21I	GWGCWC	3 cut(s)	666, 967, 1205
Alw26I	GTCTC	4 cut(s)	524, 1117, 1272, 2443
AlwI	GGATC	5 cut(s)	155, 168, 1559, 1848, 2156
Aor13HI	TCCGGA	1 cut(s)	967
AoxI	GGCC	5 cut(s)	207, 725, 851, 1015, 1979
ApeKI	GCWGC	5 cut(s)	911, 1006, 1189, 1603, 2333
ApoI	RAATTY	4 cut(s)	100, 121, 548, 2162
AseI	ATTAAT	2 cut(s)	1158, 1466
Asp700I	GAANNNNTTC	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	1528
AspLEI	GCGC	3 cut(s)	763, 989, 2410
AspS9I	GGNCC	6 cut(s)	68, 696, 894, 970, 1946, 1979
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	2 cut(s)	1165, 1268
AvaII	GGWCC	5 cut(s)	68, 696, 894, 970, 1946
BalI	TGGCCA	2 cut(s)	209, 727
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	760, 1528
BanII	GRGCYC	1 cut(s)	1205
BauI	CACGAG	1 cut(s)	889
BbsI	GAAGAC	4 cut(s)	1190, 1326, 1638, 2304
Bbv12I	GWGCWC	3 cut(s)	666, 967, 1205
BbvI	GCAGC	5 cut(s)	898, 993, 1201, 1615, 2320
BccI	CCATC	5 cut(s)	987, 1679, 2100, 2267, 2437
BceAI	ACGGC	1 cut(s)	1910
BcgI	CGANNNNNNTGC	2 cut(s)	1189, 1223
BciVI	GTATCC	2 cut(s)	604, 1760
BclI	TGATCA	1 cut(s)	2206
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	4 cut(s)	524, 1117, 1272, 2443
BcuI	ACTAGT	1 cut(s)	2186
BfaI	CTAG	6 cut(s)	740, 1353, 2072, 2187, 2433, 2466
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	764
BfuAI	ACCTGC	2 cut(s)	473, 1597
BfuI	GTATCC	2 cut(s)	604, 1760
BglII	AGATCT	1 cut(s)	2218
BisI	GCNGC	5 cut(s)	912, 1007, 1190, 1604, 2334
BlsI	GCNGC	5 cut(s)	913, 1008, 1191, 1605, 2335
BmcAI	AGTACT	1 cut(s)	1351
Bme1390I	CCNGG	1 cut(s)	908
Bme18I	GGWCC	5 cut(s)	68, 696, 894, 970, 1946
BmeRI	GACNNNNNGTC	1 cut(s)	1387
BmgT120I	GGNCC	6 cut(s)	68, 696, 894, 970, 1946, 1979
BmiI	GGNNCC	5 cut(s)	162, 673, 762, 972, 1530
BmrFI	CCNGG	1 cut(s)	908
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	1232, 2191
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	4 cut(s)	1190, 1326, 1638, 2304
BpmI	CTGGAG	1 cut(s)	1117
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	908
Bsa29I	ATCGAT	1 cut(s)	1852
BsaAI	YACGTR	1 cut(s)	2425
BsaBI	GATNNNNATC	1 cut(s)	2205
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	1117
BsaJI	CCNNGG	8 cut(s)	709, 755, 819, 897, 906, 990, 2011, 2278
BsaWI	WCCGGW	2 cut(s)	967, 1531
BsaXI	ACNNNNNCTCC	4 cut(s)	130, 160, 2034, 2064
Bsc4I	CCNNNNNNNGG	7 cut(s)	205, 644, 807, 996, 1390, 1705, 1741
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	6 cut(s)	29, 268, 288, 540, 725, 2104
Bse3DI	GCAATG	3 cut(s)	1247, 1732, 1934
Bse8I	GATNNNNATC	1 cut(s)	2205
BseAI	TCCGGA	1 cut(s)	967
BseCI	ATCGAT	1 cut(s)	1852
BseDI	CCNNGG	8 cut(s)	709, 755, 819, 897, 906, 990, 2011, 2278
BseGI	GGATG	6 cut(s)	335, 979, 1123, 1714, 2206, 2391
BseJI	GATNNNNATC	1 cut(s)	2205
BseLI	CCNNNNNNNGG	7 cut(s)	205, 644, 807, 996, 1390, 1705, 1741
BseMI	GCAATG	3 cut(s)	1247, 1732, 1934
BseMII	CTCAG	1 cut(s)	1991
BseNI	ACTGG	6 cut(s)	29, 268, 288, 540, 725, 2104
BseXI	GCAGC	5 cut(s)	898, 993, 1201, 1615, 2320
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	1058
BshFI	GGCC	5 cut(s)	209, 727, 853, 1017, 1981
BshNI	GGYRCC	2 cut(s)	760, 1528
BshVI	ATCGAT	1 cut(s)	1852
BsiEI	CGRYCG	1 cut(s)	1058
BsiHKAI	GWGCWC	3 cut(s)	666, 967, 1205
BsiSI	CCGG	4 cut(s)	594, 908, 968, 1532
BslFI	GGGAC	4 cut(s)	57, 322, 889, 1718
BslI	CCNNNNNNNGG	7 cut(s)	205, 644, 807, 996, 1390, 1705, 1741
BsmAI	GTCTC	4 cut(s)	524, 1117, 1272, 2443
BsmFI	GGGAC	4 cut(s)	57, 322, 889, 1718
BsmI	GAATGC	1 cut(s)	1927
BsnI	GGCC	5 cut(s)	209, 727, 853, 1017, 1981
Bso31I	GGTCTC	1 cut(s)	1117
Bsp1286I	GDGCHC	3 cut(s)	666, 967, 1205
Bsp13I	TCCGGA	1 cut(s)	967
Bsp143I	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
Bsp19I	CCATGG	1 cut(s)	2278
BspACI	CCGC	9 cut(s)	935, 1151, 1192, 1368, 1542, 1739, 1757, 1939, 2241
BspANI	GGCC	5 cut(s)	209, 727, 853, 1017, 1981
BspCNI	CTCAG	1 cut(s)	1992
BspDI	ATCGAT	1 cut(s)	1852
BspEI	TCCGGA	1 cut(s)	967
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	5 cut(s)	162, 673, 762, 972, 1530
BspMI	ACCTGC	2 cut(s)	473, 1597
BspPI	GGATC	5 cut(s)	155, 168, 1559, 1848, 2156
BspT107I	GGYRCC	2 cut(s)	760, 1528
BspTNI	GGTCTC	1 cut(s)	1117
BsrBI	CCGCTC	1 cut(s)	1757
BsrDI	GCAATG	3 cut(s)	1247, 1732, 1934
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	6 cut(s)	29, 268, 288, 540, 725, 2104
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	8 cut(s)	709, 755, 819, 897, 906, 990, 2011, 2278
BssMI	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
BssNAI	GTATAC	1 cut(s)	655
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	889
BssT1I	CCWWGG	7 cut(s)	709, 755, 819, 897, 990, 2011, 2278
Bst1107I	GTATAC	1 cut(s)	655
Bst2BI	CACGAG	1 cut(s)	889
Bst4CI	ACNGT	6 cut(s)	1342, 1432, 1679, 1694, 1715, 2236
Bst6I	CTCTTC	1 cut(s)	1418
BstACI	GRCGYC	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	2201
BstBAI	YACGTR	1 cut(s)	2425
BstC8I	GCNNGC	6 cut(s)	582, 1309, 1540, 1785, 1983, 2354
BstDEI	CTNAG	3 cut(s)	1235, 2000, 2063
BstDSI	CCRYGG	1 cut(s)	2278
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	6 cut(s)	335, 979, 1123, 1714, 2206, 2391
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	3 cut(s)	763, 989, 2410
BstKTI	GATC	9 cut(s)	163, 1035, 1058, 1554, 1852, 1856, 2151, 2209, 2221
BstMAI	GTCTC	4 cut(s)	524, 1117, 1272, 2443
BstMBI	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
BstMCI	CGRYCG	1 cut(s)	1058
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 581, 590, 869, 1006, 2201
BstNSI	RCATGY	5 cut(s)	147, 457, 584, 1598, 2088
BstSCI	CCNGG	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	181
BstSNI	TACGTA	1 cut(s)	2425
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	5 cut(s)	898, 993, 1201, 1615, 2320
BstV2I	GAAGAC	4 cut(s)	1190, 1326, 1638, 2304
BstX2I	RGATCY	2 cut(s)	160, 2218
BstYI	RGATCY	2 cut(s)	160, 2218
BstZ17I	GTATAC	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	1852
BsuI	GTATCC	2 cut(s)	604, 1760
BsuRI	GGCC	5 cut(s)	209, 727, 853, 1017, 1981
BsuTUI	ATCGAT	1 cut(s)	1852
BtgI	CCRYGG	1 cut(s)	2278
BtsCI	GGATG	6 cut(s)	335, 979, 1123, 1714, 2206, 2391
BtsI	GCAGTG	1 cut(s)	2202
BtsIMutI	CAGTG	5 cut(s)	162, 275, 547, 2111, 2202
BveI	ACCTGC	2 cut(s)	473, 1597
Cac8I	GCNNGC	6 cut(s)	582, 1309, 1540, 1785, 1983, 2354
CfoI	GCGC	3 cut(s)	763, 989, 2410
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	6 cut(s)	68, 696, 894, 970, 1946, 1979
ClaI	ATCGAT	1 cut(s)	1852
CseI	GACGC	1 cut(s)	1195
Csp6I	GTAC	4 cut(s)	141, 1350, 1529, 2426
CviQI	GTAC	4 cut(s)	141, 1350, 1529, 2426
DdeI	CTNAG	3 cut(s)	1235, 2000, 2063
DinI	GGCGCC	1 cut(s)	762
DpnI	GATC	9 cut(s)	162, 1034, 1057, 1553, 1851, 1855, 2150, 2208, 2220
DpnII	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
DraI	TTTAAA	1 cut(s)	1914
DraIII	CACNNNGTG	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	901
DriI	GACNNNNNGTC	1 cut(s)	1387
DseDI	GACNNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	3 cut(s)	207, 725, 1015
Eam1104I	CTCTTC	1 cut(s)	1418
Eam1105I	GACNNNNNGTC	1 cut(s)	1387
EarI	CTCTTC	1 cut(s)	1418
Ecl136II	GAGCTC	1 cut(s)	1203
Eco105I	TACGTA	1 cut(s)	2425
Eco130I	CCWWGG	7 cut(s)	709, 755, 819, 897, 990, 2011, 2278
Eco24I	GRGCYC	1 cut(s)	1205
Eco31I	GGTCTC	1 cut(s)	1117
Eco47I	GGWCC	5 cut(s)	68, 696, 894, 970, 1946
Eco53kI	GAGCTC	1 cut(s)	1203
Eco57I	CTGAAG	1 cut(s)	1862
EcoICRI	GAGCTC	1 cut(s)	1203
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	2 cut(s)	68, 1946
EcoRI	GAATTC	3 cut(s)	100, 121, 2162
EcoT14I	CCWWGG	7 cut(s)	709, 755, 819, 897, 990, 2011, 2278
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	1205
EgeI	GGCGCC	1 cut(s)	762
EheI	GGCGCC	1 cut(s)	762
ErhI	CCWWGG	7 cut(s)	709, 755, 819, 897, 990, 2011, 2278
FalI	AAGNNNNNCTT	6 cut(s)	30, 62, 1206, 1238, 1218, 1250
FaqI	GGGAC	4 cut(s)	57, 322, 889, 1718
FauI	CCCGC	3 cut(s)	1185, 1750, 1932
FauNDI	CATATG	1 cut(s)	1499
FbaI	TGATCA	1 cut(s)	2206
FblI	GTMKAC	2 cut(s)	654, 1566
Fnu4HI	GCNGC	5 cut(s)	912, 1007, 1190, 1604, 2334
FokI	GGATG	6 cut(s)	342, 966, 1130, 1721, 2213, 2398
FriOI	GRGCYC	1 cut(s)	1205
Fsp4HI	GCNGC	5 cut(s)	912, 1007, 1190, 1604, 2334
FspBI	CTAG	6 cut(s)	740, 1353, 2072, 2187, 2433, 2466
GlaI	GCGC	3 cut(s)	762, 988, 2409
GluI	GCNGC	5 cut(s)	912, 1007, 1190, 1604, 2334
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	1117
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	5 cut(s)	209, 727, 853, 1017, 1981
HapII	CCGG	4 cut(s)	594, 908, 968, 1532
HgaI	GACGC	1 cut(s)	1195
HhaI	GCGC	3 cut(s)	763, 989, 2410
Hin1I	GRCGYC	1 cut(s)	761
Hin6I	GCGC	3 cut(s)	761, 987, 2408
HinP1I	GCGC	3 cut(s)	761, 987, 2408
HincII	GTYRAC	3 cut(s)	130, 718, 2053
HindII	GTYRAC	3 cut(s)	130, 718, 2053
HindIII	AAGCTT	2 cut(s)	436, 1536
HpaII	CCGG	4 cut(s)	594, 908, 968, 1532
HphI	GGTGA	2 cut(s)	1165, 1268
Hpy166II	GTNNAC	9 cut(s)	130, 249, 273, 655, 718, 1567, 1967, 2053, 2184
Hpy188I	TCNGA	6 cut(s)	1117, 1272, 1393, 1417, 2001, 2264
Hpy8I	GTNNAC	9 cut(s)	130, 249, 273, 655, 718, 1567, 1967, 2053, 2184
HpyAV	CCTTC	8 cut(s)	81, 349, 648, 823, 1220, 1837, 1937, 2383
HpyCH4III	ACNGT	6 cut(s)	1342, 1432, 1679, 1694, 1715, 2236
HpyCH4IV	ACGT	4 cut(s)	1888, 2229, 2301, 2424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 581, 590, 869, 1006, 2201
HpyF3I	CTNAG	3 cut(s)	1235, 2000, 2063
HpySE526I	ACGT	4 cut(s)	1888, 2229, 2301, 2424
Hsp92I	GRCGYC	1 cut(s)	761
HspAI	GCGC	3 cut(s)	761, 987, 2408
KasI	GGCGCC	1 cut(s)	760
Kpn2I	TCCGGA	1 cut(s)	967
KpnI	GGTACC	1 cut(s)	1532
Ksp22I	TGATCA	1 cut(s)	2206
Kzo9I	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
LmnI	GCTCC	4 cut(s)	572, 677, 970, 1754
Lsp1109I	GCAGC	5 cut(s)	898, 993, 1201, 1615, 2320
LweI	GCATC	2 cut(s)	1232, 2191
MaeI	CTAG	6 cut(s)	740, 1353, 2072, 2187, 2433, 2466
MaeII	ACGT	4 cut(s)	1888, 2229, 2301, 2424
MaeIII	GTNAC	3 cut(s)	286, 427, 2230
MalI	GATC	9 cut(s)	162, 1034, 1057, 1553, 1851, 1855, 2150, 2208, 2220
MbiI	CCGCTC	1 cut(s)	1757
MboI	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
MboII	GAAGA	8 cut(s)	1195, 1226, 1328, 1331, 1435, 1643, 2213, 2309
MflI	RGATCY	2 cut(s)	160, 2218
MhlI	GDGCHC	3 cut(s)	666, 967, 1205
MlsI	TGGCCA	2 cut(s)	209, 727
MluNI	TGGCCA	2 cut(s)	209, 727
Mly113I	GGCGCC	1 cut(s)	761
MlyI	GAGTC	8 cut(s)	911, 953, 1267, 1274, 1490, 1526, 1940, 1990
MmeI	TCCRAC	2 cut(s)	128, 1371
Mox20I	TGGCCA	2 cut(s)	209, 727
Mph1103I	ATGCAT	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	2 cut(s)	209, 727
MseI	TTAA	8 cut(s)	450, 927, 1158, 1466, 1643, 1803, 1913, 2378
MslI	CAYNNNNRTG	1 cut(s)	1974
Msp20I	TGGCCA	2 cut(s)	209, 727
MspA1I	CMGCKG	1 cut(s)	1192
MspI	CCGG	4 cut(s)	594, 908, 968, 1532
MspR9I	CCNGG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	1927
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	6 cut(s)	34, 581, 590, 869, 1006, 2201
NarI	GGCGCC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	908
NcoI	CCATGG	1 cut(s)	2278
NdeI	CATATG	1 cut(s)	1499
NdeII	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
NlaIV	GGNNCC	5 cut(s)	162, 673, 762, 972, 1530
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	5 cut(s)	147, 457, 584, 1598, 2088
PaeI	GCATGC	1 cut(s)	584
PaqCI	CACCTGC	2 cut(s)	473, 1597
PciI	ACATGT	4 cut(s)	143, 453, 1594, 2084
PcsI	WCGNNNNNNNCGW	2 cut(s)	1020, 1858
PctI	GAATGC	1 cut(s)	1927
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	5 cut(s)	393, 1196, 1364, 1615, 2255
PkrI	GCNGC	5 cut(s)	913, 1008, 1191, 1605, 2335
Ple19I	CGATCG	1 cut(s)	1058
PleI	GAGTC	8 cut(s)	910, 952, 1267, 1273, 1489, 1525, 1939, 1990
PluTI	GGCGCC	1 cut(s)	764
PpsI	GAGTC	8 cut(s)	910, 952, 1267, 1273, 1489, 1525, 1939, 1990
Ppu21I	YACGTR	1 cut(s)	2425
PpuMI	RGGWCCY	2 cut(s)	68, 1946
PscI	ACATGT	4 cut(s)	143, 453, 1594, 2084
PshBI	ATTAAT	2 cut(s)	1158, 1466
Psp124BI	GAGCTC	1 cut(s)	1205
Psp1406I	AACGTT	1 cut(s)	1888
Psp5II	RGGWCCY	2 cut(s)	68, 1946
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	5 cut(s)	162, 673, 762, 972, 1530
PspPI	GGNCC	6 cut(s)	68, 696, 894, 970, 1946, 1979
PspPPI	RGGWCCY	2 cut(s)	68, 1946
PsuI	RGATCY	2 cut(s)	160, 2218
PvuI	CGATCG	1 cut(s)	1058
RsaI	GTAC	4 cut(s)	142, 1351, 1530, 2427
RsaNI	GTAC	4 cut(s)	141, 1350, 1529, 2426
RseI	CAYNNNNRTG	1 cut(s)	1974
SacI	GAGCTC	1 cut(s)	1205
SaqAI	TTAA	8 cut(s)	450, 927, 1158, 1466, 1643, 1803, 1913, 2378
SatI	GCNGC	5 cut(s)	912, 1007, 1190, 1604, 2334
Sau3AI	GATC	9 cut(s)	160, 1032, 1055, 1551, 1849, 1853, 2148, 2206, 2218
Sau96I	GGNCC	6 cut(s)	68, 696, 894, 970, 1946, 1979
ScaI	AGTACT	1 cut(s)	1351
SchI	GAGTC	8 cut(s)	911, 953, 1267, 1274, 1490, 1526, 1940, 1990
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	3 cut(s)	666, 967, 1205
SfaNI	GCATC	2 cut(s)	1232, 2191
SfcI	CTRYAG	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	762
SinI	GGWCC	5 cut(s)	68, 696, 894, 970, 1946
SmiMI	CAYNNNNRTG	1 cut(s)	1974
SmlI	CTYRAG	2 cut(s)	9, 878
SmoI	CTYRAG	2 cut(s)	9, 878
SnaBI	TACGTA	1 cut(s)	2425
SpeI	ACTAGT	1 cut(s)	2186
SphI	GCATGC	1 cut(s)	584
SsiI	CCGC	9 cut(s)	935, 1151, 1192, 1368, 1542, 1739, 1757, 1939, 2241
SspDI	GGCGCC	1 cut(s)	760
SspMI	CTAG	6 cut(s)	740, 1353, 2072, 2187, 2433, 2466
SstI	GAGCTC	1 cut(s)	1205
StyD4I	CCNGG	1 cut(s)	906
StyI	CCWWGG	7 cut(s)	709, 755, 819, 897, 990, 2011, 2278
TaaI	ACNGT	6 cut(s)	1342, 1432, 1679, 1694, 1715, 2236
TaiI	ACGT	4 cut(s)	1891, 2232, 2304, 2427
TaqI	TCGA	8 cut(s)	1023, 1031, 1054, 1058, 1170, 1199, 1613, 1852
TatI	WGTACW	2 cut(s)	140, 1349
TfiI	GAWTC	5 cut(s)	393, 1196, 1364, 1615, 2255
Tru1I	TTAA	8 cut(s)	450, 927, 1158, 1466, 1643, 1803, 1913, 2378
Tru9I	TTAA	8 cut(s)	450, 927, 1158, 1466, 1643, 1803, 1913, 2378
TscAI	CASTG	5 cut(s)	162, 275, 547, 2111, 2202
TseI	GCWGC	5 cut(s)	911, 1006, 1189, 1603, 2333
TspGWI	ACGGA	2 cut(s)	621, 972
TspRI	CASTG	5 cut(s)	162, 275, 547, 2111, 2202
VpaK11BI	GGWCC	5 cut(s)	68, 696, 894, 970, 1946
VspI	ATTAAT	2 cut(s)	1158, 1466
XagI	CCTNNNNNAGG	1 cut(s)	642
XapI	RAATTY	4 cut(s)	100, 121, 548, 2162
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	5 cut(s)	147, 457, 584, 1598, 2088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2285
XmiI	GTMKAC	2 cut(s)	654, 1566
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	6 cut(s)	740, 1353, 2072, 2187, 2433, 2466
ZrmI	AGTACT	1 cut(s)	1351
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.