tRNA m(4)X modification enzyme TRM13 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01880 AT4G01880 AT4G01880 |
| fragaria_vesca | FvH4_1g26500 |
| malus_domestica | MD09G1293200.v1.1 MD17G1281000.v1.1 |
| prunus_persica | Prupe.3G004500_v2.0.a1 |
| pyrus_communis | pycom09g19590 pycom17g27870 |
| rosa_chinensis | RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271 |
| rosa_laevigata | RLG00000001358 RLG00000023076 |
| rosa_multiflora | Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00395790 |
| rosa_rugosa | Rorug03G0225200 Rorug07G0272400 |
| rosa_samantha | Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600 |
| rosa_wichuraiana | Rw3G024530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 104 |
| AclWI | GGATC | 2 cut(s) | 173, 213 |
| AcsI | RAATTY | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AgsI | TTSAA | 2 cut(s) | 49, 208 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 271 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 253, 285 |
| AluBI | AGCT | 1 cut(s) | 240 |
| AluI | AGCT | 1 cut(s) | 240 |
| AlwI | GGATC | 2 cut(s) | 173, 213 |
| AoxI | GGCC | 1 cut(s) | 277 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 271 |
| Bsa29I | ATCGAT | 1 cut(s) | 217 |
| BseCI | ATCGAT | 1 cut(s) | 217 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseRI | GAGGAG | 1 cut(s) | 78 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 279 |
| BshVI | ATCGAT | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 279 |
| Bsp143I | GATC | 3 cut(s) | 165, 214, 218 |
| BspACI | CCGC | 1 cut(s) | 104 |
| BspANI | GGCC | 1 cut(s) | 279 |
| BspCNI | CTCAG | 1 cut(s) | 41 |
| BspDI | ATCGAT | 1 cut(s) | 217 |
| BspPI | GGATC | 2 cut(s) | 173, 213 |
| BssMI | GATC | 3 cut(s) | 165, 214, 218 |
| Bst4CI | ACNGT | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 1 cut(s) | 28 |
| BstKTI | GATC | 3 cut(s) | 168, 217, 221 |
| BstMBI | GATC | 3 cut(s) | 165, 214, 218 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 305 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| Bsu15I | ATCGAT | 1 cut(s) | 217 |
| BsuRI | GGCC | 1 cut(s) | 279 |
| BsuTUI | ATCGAT | 1 cut(s) | 217 |
| BtsI | GCAGTG | 1 cut(s) | 257 |
| BtsIMutI | CAGTG | 1 cut(s) | 257 |
| Cac8I | GCNNGC | 1 cut(s) | 150 |
| ClaI | ATCGAT | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 215 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviJI | RGCY | 3 cut(s) | 74, 240, 279 |
| CviKI_1 | RGCY | 3 cut(s) | 74, 240, 279 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 1 cut(s) | 28 |
| DpnI | GATC | 3 cut(s) | 167, 216, 220 |
| DpnII | GATC | 3 cut(s) | 165, 214, 218 |
| DriI | GACNNNNNGTC | 1 cut(s) | 271 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 271 |
| EcoRI | GAATTC | 1 cut(s) | 52 |
| FaiI | YATR | 2 cut(s) | 162, 301 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 224, 256 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| HaeIII | GGCC | 1 cut(s) | 279 |
| HgaI | GACGC | 1 cut(s) | 215 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 1 cut(s) | 324 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 58, 231 |
| Hpy8I | GTNNAC | 1 cut(s) | 324 |
| HpyAV | CCTTC | 3 cut(s) | 53, 202, 226 |
| HpyCH4III | ACNGT | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 250, 299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 305 |
| HpyF3I | CTNAG | 1 cut(s) | 28 |
| Kzo9I | GATC | 3 cut(s) | 165, 214, 218 |
| LmnI | GCTCC | 1 cut(s) | 119 |
| LpnPI | CCDG | 4 cut(s) | 108, 114, 134, 261 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| MalI | GATC | 3 cut(s) | 167, 216, 220 |
| MboI | GATC | 3 cut(s) | 165, 214, 218 |
| MboII | GAAGA | 2 cut(s) | 44, 61 |
| MfeI | CAATTG | 1 cut(s) | 134 |
| MluCI | AATT | 4 cut(s) | 15, 52, 134, 261 |
| MnlI | CCTC | 4 cut(s) | 56, 63, 122, 183 |
| MunI | CAATTG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 305 |
| NdeII | GATC | 3 cut(s) | 165, 214, 218 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 223 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 3 cut(s) | 165, 214, 218 |
| SetI | ASST | 3 cut(s) | 12, 177, 242 |
| Sse9I | AATT | 4 cut(s) | 15, 52, 134, 261 |
| SsiI | CCGC | 1 cut(s) | 104 |
| TaaI | ACNGT | 1 cut(s) | 269 |
| TaqI | TCGA | 1 cut(s) | 217 |
| TasI | AATT | 4 cut(s) | 15, 52, 134, 261 |
| TscAI | CASTG | 1 cut(s) | 257 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspRI | CASTG | 1 cut(s) | 257 |
| XapI | RAATTY | 1 cut(s) | 52 |