Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Reverse (-)

14638658 .. 14639237

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGAGGACTGTTTATAGTATGTCTGTACCTGATTTCTATAAGTTAATTGAAAAAATTGAGTCTGTTCATAAGTCTATATGCAAGGATATTCAGGAGTCGTTTAAGGTGCCGGAAGCTTGTGGAATGTGGATCAAAAGAGAGGTGTGGATCAAAAGAGAGGTAGACAAACAATTGCCATTTCAAGAGAAACATGTTAAGCAGCAGGCGTTGATTCTCGGAAACATGGAAGATTTTGGGGTAATAAAGAGTTTCATAGCAAAGGACAGGGCTGACTGTGACGATGGCAATGGGTTCCCTGTGAGCGATGACTGTGATTATAGCAATGGTGTCCCAGCAGTGGTTGAGTTTGGAGTGGGGAGAGGATACTTGACACAAATGCTGGCGGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGTTAGTTTAATTAATGTTCCTTTTCCTAAGCGTAGATTGCTTGTCTTATACTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

168

Amino Acids

19.33

Weight (kDa)

8.88

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM13	PF05206	68 - 149	8e-06	Methyltransferase TRM13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	140, 158
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	53, 185, 422
AluBI	AGCT	2 cut(s)	119, 439
AluI	AGCT	2 cut(s)	119, 439
AlwI	GGATC	2 cut(s)	140, 158
ApeKI	GCWGC	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	111, 296
Bpu10I	CCTNAGC	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	295, 331
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	2 cut(s)	295, 331
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	132, 150
BspACI	CCGC	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	111, 296
BspPI	GGATC	2 cut(s)	140, 158
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	295, 331
BssMI	GATC	2 cut(s)	132, 150
Bst4CI	ACNGT	3 cut(s)	13, 278, 314
BstC8I	GCNNGC	2 cut(s)	207, 384
BstDEI	CTNAG	1 cut(s)	471
BstKTI	GATC	2 cut(s)	135, 153
BstMBI	GATC	2 cut(s)	132, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	207, 384
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	194, 226
CviJI	RGCY	3 cut(s)	119, 272, 439
CviKI_1	RGCY	3 cut(s)	119, 272, 439
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	2 cut(s)	134, 152
DpnII	GATC	2 cut(s)	132, 150
EciI	GGCGGA	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	461
FaeI	CATG	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	193, 225
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	338
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	197, 229
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	3 cut(s)	62, 98, 214
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	2 cut(s)	95, 185
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	3 cut(s)	13, 278, 314
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	197, 229
Kzo9I	GATC	2 cut(s)	132, 150
LpnPI	CCDG	8 cut(s)	45, 80, 126, 191, 253, 312, 348, 368
Lsp1109I	GCAGC	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	134, 152
MboI	GATC	2 cut(s)	132, 150
MboII	GAAGA	2 cut(s)	16, 242
MfeI	CAATTG	1 cut(s)	173
MluCI	AATT	5 cut(s)	48, 57, 173, 453, 499
MlyI	GAGTC	2 cut(s)	71, 107
MnlI	CCTC	3 cut(s)	136, 154, 356
MseI	TTAA	7 cut(s)	47, 105, 198, 402, 452, 456, 502
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeII	GATC	2 cut(s)	132, 150
NlaIII	CATG	2 cut(s)	197, 229
NlaIV	GGNNCC	2 cut(s)	111, 296
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	197
PacI	TTAATTAA	1 cut(s)	456
PciI	ACATGT	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	70, 106
PpsI	GAGTC	2 cut(s)	70, 106
PscI	ACATGT	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	111, 296
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	7 cut(s)	47, 105, 198, 402, 452, 456, 502
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	132, 150
SchI	GAGTC	2 cut(s)	71, 107
SetI	ASST	7 cut(s)	34, 111, 121, 147, 165, 441, 447
Sse9I	AATT	5 cut(s)	48, 57, 173, 453, 499
SsiI	CCGC	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	13, 278, 314
TasI	AATT	5 cut(s)	48, 57, 173, 453, 499
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	7 cut(s)	47, 105, 198, 402, 452, 456, 502
Tru9I	TTAA	7 cut(s)	47, 105, 198, 402, 452, 456, 502
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	17, 59, 244
TspRI	CASTG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	456
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.