Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

56238603 .. 56241806

Gene Structure 3204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAAGATTTTGGGGTAACAAAGAGTTTCATAGCAAAGGAGAGAGCTGACTGTGACGATGGCAATGGGTTCCCTGTGAGCGATGACTGTGATTATAGCAATGGTGTCCCAGCAGTGGTTGAGTTTGGAGTGGGAAGAGGATACTTGACACAAATGCTGGCGGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGCTGATCGATCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

4.95

Isoelectric Point (pI)

16.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM13	PF05206	36 - 77	8.8e-08	Methyltransferase TRM13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	2 cut(s)	47, 214
AluI	AGCT	2 cut(s)	47, 214
AlwI	GGATC	1 cut(s)	222
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	70, 106
BseCI	ATCGAT	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	70, 106
BseYI	CCCAGC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	223, 227
BspACI	CCGC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	70, 106
BssMI	GATC	2 cut(s)	223, 227
Bst4CI	ACNGT	2 cut(s)	53, 89
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	159
BstKTI	GATC	2 cut(s)	226, 230
BstMBI	GATC	2 cut(s)	223, 227
Bsu15I	ATCGAT	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	226
CviJI	RGCY	3 cut(s)	47, 214, 221
CviKI_1	RGCY	3 cut(s)	47, 214, 221
DpnI	GATC	2 cut(s)	225, 229
DpnII	GATC	2 cut(s)	223, 227
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	236
FaiI	YATR	4 cut(s)	32, 96, 171, 208
FaqI	GGGAC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	53, 89
Kzo9I	GATC	2 cut(s)	223, 227
LpnPI	CCDG	3 cut(s)	87, 123, 143
MaeIII	GTNAC	2 cut(s)	16, 53
MalI	GATC	2 cut(s)	225, 229
MboI	GATC	2 cut(s)	223, 227
MboII	GAAGA	2 cut(s)	17, 147
MnlI	CCTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	177
NdeII	GATC	2 cut(s)	223, 227
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	223, 227
SetI	ASST	2 cut(s)	49, 216
SgeI	CNNG	5 cut(s)	86, 122, 157, 170, 223
SsiI	CCGC	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	53, 89
TaqI	TCGA	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.