Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

20459005 .. 20461611

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19590.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGAGACTCGATGCAAATTTTGGCTTCCGAAAAAGAAGAGATTTTGTGCCAATGTCCCCCTCAACGACTCTCTGTTTTGTGGGAACCACACAGCGAGGTTGGATGGCGAGTGGGTTCCATGCCCAATTGACCCTTCTCACTCTGTACTTAGCGAAAATCTCGAAGGACATGTGAGGAGGTGCCCTTTACTCAAACAAGTGGAGTCTTTGACCAACCAACCCTTTTACCAAAAGGGTATCAATGCTGGCAAAGAAGACGACCACGATGAAATAGAATCGTTGGGAGTCGACGGGCCCGGAGATTTGGCATCGTCTAATAAGCCCTTGTTGGGGGCTTTGGACATTGTTTCGGAGATGAAGAGGAATGCTGTTTATAGTATGACTGTGCCTGATTTTTACAAATTAGTTGAAAAAATTGAGTCTGTTCATGAATCTTTGTGTAAGGATATTCGGGACTCGTACAAGGTGACAGAAGCTTGTGGGATGTGGATTAAACGAGAGGTAGACAGAAAAATTCCGTTTCAAGAGAAACATGTTATGCAGCAGGTGTCAATTCTTGGGAACTTGGAAGATTTTGGGGTATTGAAGAATTCGGAAGGAGGAGAGAGGGCTGACTCTGGTGATGGCAATGGTGTTCCTGCGGTGGTTGAGTTTGGGGCGGGGAGAGGATACTTGACACAAATGCTGGCAGATTGTTATGGGATCAAAAGGGTTTTTCTGGTTGAGAGGAAATCGTACAAGTTAAAGGCTGATCGATCCCTGCGTCAGAAGGAGAGATTGATTTTGCAGCGTTTGAGAATTGACATTGAGGATTTAAACTTGAATGCTGTTGAGTCATTGCGGGGAGGTCAGTACCTGGCTATTGGGAAACATCTTTGTGGGCCTGCAACAGATTTAACTCTGAGATGTTGCCTTGGGGAACACTTGCAAAGCAATATCGAACGGCGCAGTGTTAACCCAAACCTGAGAGGTTTGGCTATAGCAACATGTTGTCATCATCTTTGCCAGTGGAAGCCCTACATAAATAAAAAATATTTATTAGAGTTGGGTATCACCAAAGAGGTATTCCATGCAATTACATGGTTTACCAGTTGGGCAGTAGATGCTGATCACGGTGCTAATCTTCGCGATGTTACTGATTGCAGACCGCATTTAGAATCCATTGAAAGGAAGCAATGTGGCATAGACGATGGAGTTGAAGACTGTGTGCGAAATATGAAGGCAGTTGAAAGGGCTGTGTTAGGTTTTATGTGCAAGCAGATTATAGACATGGGTAGGTTAATGTGGATGAAGGAACGAGGATTAGAAGCAGAGTTTGTCAAATACGTTCCGTCTAGCGTTTCTCCTGAAAACCATCTATTGATTGGTAGATGCACCAACCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

463

Amino Acids

52.23

Weight (kDa)

6.93

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	288, 504
AccII	CGCG	1 cut(s)	1128
AciI	CCGC	4 cut(s)	641, 659, 841, 1148
AclWI	GGATC	2 cut(s)	710, 750
AcsI	RAATTY	3 cut(s)	17, 513, 589
AfaI	GTAC	4 cut(s)	147, 461, 737, 854
AfiI	CCNNNNNNNGG	3 cut(s)	329, 330, 1167
AflIII	ACRYGT	3 cut(s)	169, 532, 986
AgsI	TTSAA	7 cut(s)	410, 524, 586, 823, 1166, 1199, 1229
AjnI	CCWGG	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	4 cut(s)	118, 150, 1049, 1081
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
AlwI	GGATC	2 cut(s)	710, 750
AlwNI	CAGNNNCTG	1 cut(s)	856
AoxI	GGCC	2 cut(s)	293, 881
ApaI	GGGCCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	541, 787
ApoI	RAATTY	3 cut(s)	17, 513, 589
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	3 cut(s)	293, 294, 881
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	478, 632, 1045
BaeGI	GKGCMC	2 cut(s)	185, 297
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	261, 1206
BbvI	GCAGC	2 cut(s)	553, 799
BccI	CCATC	4 cut(s)	98, 617, 1184, 1362
BceAI	ACGGC	1 cut(s)	959
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	1335
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	2 cut(s)	542, 788
BlsI	GCNGC	2 cut(s)	543, 789
Bme1390I	CCNGG	2 cut(s)	297, 857
BmgT120I	GGNCC	3 cut(s)	293, 294, 881
BmiI	GGNNCC	4 cut(s)	86, 117, 182, 295
BmrFI	CCNGG	2 cut(s)	297, 857
BmsI	GCATC	4 cut(s)	2, 317, 1093, 1361
BpiI	GAAGAC	2 cut(s)	261, 1206
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	1107
BsaJI	CCNNGG	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 330, 1167
Bse1I	ACTGG	2 cut(s)	1006, 1089
Bse3DI	GCAATG	3 cut(s)	634, 836, 1181
Bse8I	GATNNNNATC	1 cut(s)	1107
BseBI	CCWGG	1 cut(s)	857
BseCI	ATCGAT	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	3 cut(s)	109, 489, 1293
BseJI	GATNNNNATC	1 cut(s)	1107
BseLI	CCNNNNNNNGG	3 cut(s)	329, 330, 1167
BseMI	GCAATG	3 cut(s)	634, 836, 1181
BseMII	CTCAG	2 cut(s)	893, 956
BseNI	ACTGG	2 cut(s)	1006, 1089
BseRI	GAGGAG	2 cut(s)	190, 615
BseSI	GKGCMC	2 cut(s)	185, 297
BseXI	GCAGC	2 cut(s)	553, 799
Bsh1236I	CGCG	1 cut(s)	1128
BshFI	GGCC	2 cut(s)	295, 883
BshNI	GGYRCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	754
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	41, 467
BslI	CCNNNNNNNGG	3 cut(s)	329, 330, 1167
BsmFI	GGGAC	2 cut(s)	41, 467
BsmI	GAATGC	2 cut(s)	370, 829
BsnI	GGCC	2 cut(s)	295, 883
Bsp120I	GGGCCC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	185, 297
Bsp143I	GATC	4 cut(s)	702, 751, 755, 1108
Bsp68I	TCGCGA	1 cut(s)	1128
BspACI	CCGC	4 cut(s)	641, 659, 841, 1148
BspANI	GGCC	2 cut(s)	295, 883
BspCNI	CTCAG	2 cut(s)	894, 957
BspDI	ATCGAT	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	1128
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	86, 117, 182, 295
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	710, 750
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	3 cut(s)	634, 836, 1181
BsrI	ACTGG	2 cut(s)	1006, 1089
BssECI	CCNNGG	1 cut(s)	913
BssMI	GATC	4 cut(s)	702, 751, 755, 1108
BssT1I	CCWWGG	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	3 cut(s)	385, 1115, 1205
Bst6I	CTCTTC	2 cut(s)	32, 353
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstC8I	GCNNGC	4 cut(s)	247, 687, 885, 1256
BstDEI	CTNAG	3 cut(s)	149, 902, 965
BstF5I	GGATG	3 cut(s)	109, 489, 1293
BstFNI	CGCG	1 cut(s)	1128
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	4 cut(s)	705, 754, 758, 1111
BstMBI	GATC	4 cut(s)	702, 751, 755, 1108
BstMWI	GCNNNNNNNGC	1 cut(s)	1103
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	3 cut(s)	173, 536, 990
BstSCI	CCNGG	2 cut(s)	295, 855
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	2 cut(s)	185, 297
BstUI	CGCG	1 cut(s)	1128
BstV1I	GCAGC	2 cut(s)	553, 799
BstV2I	GAAGAC	2 cut(s)	261, 1206
Bsu15I	ATCGAT	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	295, 883
BsuTUI	ATCGAT	1 cut(s)	754
BtgZI	GCGATG	1 cut(s)	1143
BtsCI	GGATG	3 cut(s)	109, 489, 1293
BtsI	GCAGTG	1 cut(s)	955
BtsIMutI	CAGTG	2 cut(s)	955, 1013
BtuMI	TCGCGA	1 cut(s)	1128
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	4 cut(s)	247, 687, 885, 1256
CaiI	CAGNNNCTG	1 cut(s)	856
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	948
Cfr13I	GGNCC	3 cut(s)	293, 294, 881
ClaI	ATCGAT	1 cut(s)	754
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	4 cut(s)	146, 460, 736, 853
CviAII	CATG	8 cut(s)	120, 170, 428, 533, 987, 1070, 1080, 1270
CviQI	GTAC	4 cut(s)	146, 460, 736, 853
DdeI	CTNAG	3 cut(s)	149, 902, 965
DpnI	GATC	4 cut(s)	704, 753, 757, 1110
DpnII	GATC	4 cut(s)	702, 751, 755, 1108
DraI	TTTAAA	1 cut(s)	816
Eam1104I	CTCTTC	2 cut(s)	32, 353
EarI	CTCTTC	2 cut(s)	32, 353
Eco130I	CCWWGG	1 cut(s)	913
Eco24I	GRGCYC	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	855
EcoT14I	CCWWGG	1 cut(s)	913
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	913
FaeI	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
FaqI	GGGAC	2 cut(s)	41, 467
FatI	CATG	8 cut(s)	119, 169, 427, 532, 986, 1069, 1079, 1269
FauI	CCCGC	2 cut(s)	652, 834
FbaI	TGATCA	1 cut(s)	1108
FblI	GTMKAC	2 cut(s)	288, 504
Fnu4HI	GCNGC	2 cut(s)	542, 788
FokI	GGATG	3 cut(s)	116, 496, 1300
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	542, 788
FspBI	CTAG	1 cut(s)	1335
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	2 cut(s)	542, 788
HaeIII	GGCC	2 cut(s)	295, 883
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HincII	GTYRAC	2 cut(s)	289, 955
HindII	GTYRAC	2 cut(s)	289, 955
HindIII	AAGCTT	1 cut(s)	474
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	3 cut(s)	478, 632, 1045
Hpy166II	GTNNAC	4 cut(s)	289, 505, 955, 1086
Hpy188I	TCNGA	5 cut(s)	30, 352, 595, 768, 903
Hpy188III	TCNNGA	7 cut(s)	161, 428, 452, 524, 1127, 1346, 1386
Hpy8I	GTNNAC	4 cut(s)	289, 505, 955, 1086
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	6 cut(s)	144, 158, 590, 763, 1213, 1285
HpyCH4III	ACNGT	3 cut(s)	385, 1115, 1205
HpyCH4IV	ACGT	1 cut(s)	1326
HpyCH4V	TGCA	9 cut(s)	15, 541, 787, 887, 928, 1073, 1143, 1254, 1374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1103
HpyF3I	CTNAG	3 cut(s)	149, 902, 965
HpySE526I	ACGT	1 cut(s)	1326
Hsp92II	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
HspAI	GCGC	1 cut(s)	946
Ksp22I	TGATCA	1 cut(s)	1108
KspAI	GTTAAC	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	702, 751, 755, 1108
Lsp1109I	GCAGC	2 cut(s)	553, 799
LweI	GCATC	4 cut(s)	2, 317, 1093, 1361
MaeI	CTAG	1 cut(s)	1335
MaeII	ACGT	1 cut(s)	1326
MaeIII	GTNAC	2 cut(s)	466, 1132
MalI	GATC	4 cut(s)	704, 753, 757, 1110
MboI	GATC	4 cut(s)	702, 751, 755, 1108
MboII	GAAGA	7 cut(s)	49, 266, 370, 581, 598, 1115, 1211
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	185, 297
MluCI	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
MlyI	GAGTC	7 cut(s)	62, 212, 294, 428, 449, 608, 842
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
MslI	CAYNNNNRTG	1 cut(s)	876
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	297, 857
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	370, 829
MvaI	CCWGG	1 cut(s)	857
MvnI	CGCG	1 cut(s)	1128
MwoI	GCNNNNNNNGC	1 cut(s)	1103
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	702, 751, 755, 1108
NlaIII	CATG	8 cut(s)	123, 173, 431, 536, 990, 1073, 1083, 1273
NlaIV	GGNNCC	4 cut(s)	86, 117, 182, 295
NmuCI	GTSAC	1 cut(s)	466
NruI	TCGCGA	1 cut(s)	1128
NspI	RCATGY	3 cut(s)	173, 536, 990
PagI	TCATGA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	3 cut(s)	169, 532, 986
PcsI	WCGNNNNNNNCGW	1 cut(s)	760
PctI	GAATGC	2 cut(s)	370, 829
PfeI	GAWTC	3 cut(s)	275, 431, 1157
PkrI	GCNGC	2 cut(s)	543, 789
PleI	GAGTC	7 cut(s)	62, 211, 293, 427, 449, 608, 841
PpsI	GAGTC	7 cut(s)	62, 211, 293, 427, 449, 608, 841
PscI	ACATGT	3 cut(s)	169, 532, 986
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	4 cut(s)	86, 117, 182, 295
PspOMI	GGGCCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	293, 294, 881
PstNI	CAGNNNCTG	1 cut(s)	856
RruI	TCGCGA	1 cut(s)	1128
RsaI	GTAC	4 cut(s)	147, 461, 737, 854
RsaNI	GTAC	4 cut(s)	146, 460, 736, 853
RseI	CAYNNNNRTG	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
SatI	GCNGC	2 cut(s)	542, 788
Sau3AI	GATC	4 cut(s)	702, 751, 755, 1108
Sau96I	GGNCC	3 cut(s)	293, 294, 881
SchI	GAGTC	7 cut(s)	62, 212, 294, 428, 449, 608, 842
ScrFI	CCNGG	2 cut(s)	297, 857
SduI	GDGCHC	2 cut(s)	185, 297
SfaNI	GCATC	4 cut(s)	2, 317, 1093, 1361
SfcI	CTRYAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	876
Sse9I	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
SsiI	CCGC	4 cut(s)	641, 659, 841, 1148
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	1 cut(s)	1335
StyD4I	CCNGG	2 cut(s)	295, 855
StyI	CCWWGG	1 cut(s)	913
TaaI	ACNGT	3 cut(s)	385, 1115, 1205
TaiI	ACGT	1 cut(s)	1329
TaqI	TCGA	5 cut(s)	10, 162, 288, 754, 939
TasI	AATT	9 cut(s)	17, 126, 401, 414, 513, 552, 589, 798, 1074
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	275, 431, 1157
Tru1I	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
Tru9I	TTAA	6 cut(s)	492, 743, 815, 896, 954, 1280
TscAI	CASTG	2 cut(s)	955, 1013
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	541, 787
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	6 cut(s)	282, 371, 416, 444, 1232, 1304
TspGWI	ACGGA	2 cut(s)	507, 1320
TspRI	CASTG	2 cut(s)	955, 1013
XapI	RAATTY	3 cut(s)	17, 513, 589
XceI	RCATGY	3 cut(s)	173, 536, 990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1361
XmiI	GTMKAC	2 cut(s)	288, 504
XspI	CTAG	1 cut(s)	1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.