Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Reverse (-)

31468165 .. 31482048

Gene Structure 13884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGGTGGTCAGGTAACTGAAAGCTTTCAGCTAACGAACATGTTTTTTGAAACTAAACAGACAAGTGCAGGTGCTTCTATGCTTACAGATATAGTTTTTTGGTGTCTCATACTTCCATTTCTAACCAGTATGGAATTTGAAATGACCCTGTTGATAGGAGCTATGCATGCTGTAAATGCCGGTTTTCTTATTGTGGATACCGCTCTCAATAGACTTCCGTTTCCTTCGTTAGGGTTTGTATACTTTGTGCTCTTTGGCTCCCTCTACATCACTTTCCAATGGACCATTCACGCCCTTGGTGTTGACTGGTGGCCATATCCTTTTCTTGAGTTAAATACACCTTGGGCGCCTGTATGTTATTTTGGGTTGGCATTGGTTCATATTCCCTGTTATTGGATATATACCTTGGTCGTGAAGGCAAAAGGTTCAATTCTCCCCAAATTGTTTCCCCGTACATTTGACAGGCACCCAATAGGAAGTGGGCACCCATCTGTCCAGCCTATCCGCTTGCTGACCGCCTTCTACCTCCGCGCTAAGGATAGTCCAGCCTCGTGCCACTGCACCATGGAGAACCCCTTCTGTTGCCGTACCCTGGAGAGCGCAGCCTCCATCCACAAATACGACGCGCGGTTTATTTTAGTCAAGGTTGAAGAAGGGCTGCAGGGAAGAAGACCCAAAGAGGGAATAAGAAACAGCGCAGTAATGGAAAACCGCTGCAAGTTTTGGCTCCCTAAAAAGAAGAGATTTTGTGCCAATGTTCCCCTCACTGAATCAGTGTTCTGTGGCAACCATACACCCAGGTCCGACAGCCAGTGGATTCCATGCCCAATAGACCCTTCTCACTCTGTGCTTGAAGAAAATCTTGAAGGACATCTTAGGAGATGCCCATTGCTCAAACAAGTGGAGTCTCTGACTCACCAGCCCTTTTACCAAAAGGGTATCAATGCTGGCAAAGAAGAAGACCAACAAGAAATAGAAACAGTCAGTAGTACTAGATTGGAGGATTCGGCATTGGCTGATGACCCCAAGTCGGAGGCTTTTGGCTACATTCTTTCGGAAATGAAGAGGACTGTTTATAGTATGTCTGTGCCTGATTTCTATAAATTAATCGAAAAAATTGAGTCTGTTCATAAGTCCATATGCAAGGATATTCAGGAGTCGTATAAGGTACCGGAAGCTTGCGGAATGTGGATCAAAAGAGAGGTAGACAGAAAATTGCCATTTCAAGAGAAACATGTTATGCAGCAGGTGTCGATTCTTGGAAACATGGAAGATTTTGGGGTAATAAAGAGTTCCATAGCAAAGGAGAGGGCTAACTGTGATGATGGCGATGGGTTCCCTGTGAGGGATGACTGTGATTATAGCAATGGTGTCCCTGCGGTGGTTGAGTTTGGAGCGGGGAGAGGATACTTGACACAAATGCTGGCAGATTGTTACGGCATTAAGAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGCTGATCGATCCTTGCGACAGAAAGAGAGCTTGATACTGCAACGTTTGAGAATTGACATTGAGGATTTAAACCTGAATGCTGTTGAGTCATTGCGGGGAGGTCCTTTCATTTCTATCGGTAAACATCTTTGTGGGCCTGCAACAGATTTGACTCTGAGATGTTGCCTTGGGGAACAATCCAACCAAAGTAATGGTGGAGGGTGTGTTAACCCGAACCTAAGAGGTCTAGCTATTGCCACATGTTGCCATCATCTTTGCCAGTGGAAGCACTACATAAATAAGAAGTATCTATTAGAGTTGGGGATCACAAAAGAGGAATTCCATGTAATTATATGGTTCACTAGTTGGGCAGTGGATGCTGATCATGGCACAGATCTTCCTGATGTTACTGATTGCGGATTTCATCTTGAATCCATCGGAAAGAAGCAATCCCATGGAGATAATGAAGTCGAAGACGTTGTGAGAAATATGAAAGCAGTTGAAAGGGCTGCGTTAGGGTTCATGTGCAAGCAGATTATAGACACGGGTAGGTTAATGTGGATGAAGGAACATGGATTGGAAGCGCAGTTTGTCAAATACGTACCATCTAGTGTCTCCCCTGAAAACCACTTACTAATTGCTAGAAGCACCAATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

708

Amino Acids

80.08

Weight (kDa)

6.65

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TRM13_CCCH	PF11722	237 - 264	7.1e-12	CCCH zinc finger in TRM13 protein
zf-U11-48K	PF05253	272 - 296	8.3e-08	U11-48K-like CHHC zinc finger
TRM13	PF05206	414 - 702	9.8e-82	Methyltransferase TRM13
Methyltransf_32	PF13679	455 - 563	1.2e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	59, 1237
Acc36I	ACCTGC	2 cut(s)	59, 1237
Acc65I	GGTACC	1 cut(s)	1168
AccB1I	GGYRCC	4 cut(s)	346, 465, 483, 1168
AccBSI	CCGCTC	2 cut(s)	203, 1397
AccI	GTMKAC	2 cut(s)	240, 1206
AccII	CGCG	3 cut(s)	531, 626, 628
AclI	AACGTT	1 cut(s)	1528
AclWI	GGATC	3 cut(s)	1199, 1488, 1796
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	134, 1802
AcuI	CTGAAG	1 cut(s)	1502
AcyI	GRCGYC	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	5 cut(s)	454, 589, 991, 1170, 2067
AfiI	CCNNNNNNNGG	8 cut(s)	230, 393, 535, 592, 680, 1030, 1345, 1381
AflIII	ACRYGT	3 cut(s)	39, 1234, 1724
AhdI	GACNNNNNGTC	1 cut(s)	1027
AhlI	ACTAGT	1 cut(s)	1826
AjnI	CCWGG	2 cut(s)	591, 797
AjuI	GAANNNNNNNTTGG	4 cut(s)	270, 302, 820, 852
AluBI	AGCT	7 cut(s)	24, 31, 161, 1178, 1480, 1515, 1715
AluI	AGCT	7 cut(s)	24, 31, 161, 1178, 1480, 1515, 1715
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	110, 912, 2083
AlwI	GGATC	3 cut(s)	1199, 1488, 1796
AoxI	GGCC	2 cut(s)	311, 1619
ApeKI	GCWGC	5 cut(s)	602, 658, 714, 1243, 1973
ApoI	RAATTY	2 cut(s)	134, 1802
AseI	ATTAAT	1 cut(s)	1106
Asp700I	GAANNNNTTC	2 cut(s)	24, 575
Asp718I	GGTACC	1 cut(s)	1168
AspLEI	GCGC	6 cut(s)	349, 533, 602, 628, 698, 2050
AspS9I	GGNCC	4 cut(s)	282, 801, 1586, 1619
AsuHPI	GGTGA	1 cut(s)	908
AvaII	GGWCC	3 cut(s)	282, 801, 1586
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	313
BanI	GGYRCC	4 cut(s)	346, 465, 483, 1168
BauI	CACGAG	1 cut(s)	550
BbsI	GAAGAC	3 cut(s)	676, 966, 1944
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	5 cut(s)	614, 645, 701, 1255, 1960
BccI	CCATC	7 cut(s)	496, 617, 1319, 1325, 1740, 1907, 2077
BceAI	ACGGC	2 cut(s)	570, 1453
BciT130I	CCWGG	2 cut(s)	593, 799
BciVI	GTATCC	2 cut(s)	190, 1400
BclI	TGATCA	1 cut(s)	1846
BcoDI	GTCTC	3 cut(s)	110, 912, 2083
BcuI	ACTAGT	1 cut(s)	1826
BfaI	CTAG	5 cut(s)	993, 1712, 1827, 2073, 2106
BfmI	CTRYAG	1 cut(s)	659
BfoI	RGCGCY	1 cut(s)	350
BfuAI	ACCTGC	2 cut(s)	59, 1237
BfuI	GTATCC	2 cut(s)	190, 1400
BglII	AGATCT	1 cut(s)	1858
BisI	GCNGC	5 cut(s)	603, 659, 715, 1244, 1974
BlsI	GCNGC	5 cut(s)	604, 660, 716, 1245, 1975
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	2 cut(s)	593, 799
Bme18I	GGWCC	3 cut(s)	282, 801, 1586
BmeRI	GACNNNNNGTC	1 cut(s)	1027
BmgT120I	GGNCC	4 cut(s)	282, 801, 1586, 1619
BmiI	GGNNCC	7 cut(s)	259, 348, 467, 485, 728, 1170, 1337
BmrFI	CCNGG	2 cut(s)	593, 799
BmsI	GCATC	2 cut(s)	872, 1831
BpiI	GAAGAC	3 cut(s)	676, 966, 1944
BpmI	CTGGAG	1 cut(s)	614
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	1492
BsaAI	YACGTR	1 cut(s)	2065
BsaBI	GATNNNNATC	1 cut(s)	1845
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	8 cut(s)	295, 341, 405, 564, 591, 797, 1651, 1918
BsaWI	WCCGGW	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	2 cut(s)	1674, 1704
Bsc4I	CCNNNNNNNGG	8 cut(s)	230, 393, 535, 592, 680, 1030, 1345, 1381
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	4 cut(s)	126, 311, 811, 1744
Bse3DI	GCAATG	3 cut(s)	887, 1372, 1574
Bse8I	GATNNNNATC	1 cut(s)	1845
BseBI	CCWGG	2 cut(s)	593, 799
BseCI	ATCGAT	1 cut(s)	1492
BseDI	CCNNGG	8 cut(s)	295, 341, 405, 564, 591, 797, 1651, 1918
BseGI	GGATG	4 cut(s)	609, 1354, 1846, 2031
BseJI	GATNNNNATC	1 cut(s)	1845
BseLI	CCNNNNNNNGG	8 cut(s)	230, 393, 535, 592, 680, 1030, 1345, 1381
BseMI	GCAATG	3 cut(s)	887, 1372, 1574
BseMII	CTCAG	1 cut(s)	1631
BseNI	ACTGG	4 cut(s)	126, 311, 811, 1744
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	5 cut(s)	614, 645, 701, 1255, 1960
BsgI	GTGCAG	2 cut(s)	87, 544
Bsh1236I	CGCG	3 cut(s)	531, 626, 628
BshFI	GGCC	2 cut(s)	313, 1621
BshNI	GGYRCC	4 cut(s)	346, 465, 483, 1168
BshVI	ATCGAT	1 cut(s)	1492
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	180, 1172
BslFI	GGGAC	1 cut(s)	1358
BslI	CCNNNNNNNGG	8 cut(s)	230, 393, 535, 592, 680, 1030, 1345, 1381
BsmAI	GTCTC	3 cut(s)	110, 912, 2083
BsmFI	GGGAC	1 cut(s)	1358
BsmI	GAATGC	1 cut(s)	1567
BsnI	GGCC	2 cut(s)	313, 1621
Bsp1286I	GDGCHC	2 cut(s)	252, 486
Bsp143I	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
Bsp19I	CCATGG	2 cut(s)	564, 1918
BspANI	GGCC	2 cut(s)	313, 1621
BspCNI	CTCAG	1 cut(s)	1632
BspDI	ATCGAT	1 cut(s)	1492
BspFNI	CGCG	3 cut(s)	531, 626, 628
BspLI	GGNNCC	7 cut(s)	259, 348, 467, 485, 728, 1170, 1337
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	2 cut(s)	59, 1237
BspPI	GGATC	3 cut(s)	1199, 1488, 1796
BspT107I	GGYRCC	4 cut(s)	346, 465, 483, 1168
BsrBI	CCGCTC	2 cut(s)	203, 1397
BsrDI	GCAATG	3 cut(s)	887, 1372, 1574
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	4 cut(s)	126, 311, 811, 1744
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	8 cut(s)	295, 341, 405, 564, 591, 797, 1651, 1918
BssMI	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
BssNAI	GTATAC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	6 cut(s)	295, 341, 405, 564, 1651, 1918
Bst1107I	GTATAC	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	593, 799
Bst4CI	ACNGT	4 cut(s)	982, 1072, 1319, 1355
Bst6I	CTCTTC	2 cut(s)	734, 1058
BstACI	GRCGYC	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	1841
BstBAI	YACGTR	1 cut(s)	2065
BstC8I	GCNNGC	7 cut(s)	168, 509, 949, 1180, 1425, 1623, 1994
BstDEI	CTNAG	4 cut(s)	534, 875, 1640, 1703
BstDSI	CCRYGG	2 cut(s)	564, 1918
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	609, 1354, 1846, 2031
BstFNI	CGCG	3 cut(s)	531, 626, 628
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	6 cut(s)	349, 533, 602, 628, 698, 2050
BstKTI	GATC	6 cut(s)	1194, 1492, 1496, 1791, 1849, 1861
BstMAI	GTCTC	3 cut(s)	110, 912, 2083
BstMBI	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 1841
BstNI	CCWGG	2 cut(s)	593, 799
BstNSI	RCATGY	4 cut(s)	43, 170, 1238, 1728
BstSCI	CCNGG	2 cut(s)	591, 797
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	1 cut(s)	486
BstSNI	TACGTA	1 cut(s)	2065
BstUI	CGCG	3 cut(s)	531, 626, 628
BstV1I	GCAGC	5 cut(s)	614, 645, 701, 1255, 1960
BstV2I	GAAGAC	3 cut(s)	676, 966, 1944
BstX2I	RGATCY	1 cut(s)	1858
BstXI	CCANNNNNNTGG	1 cut(s)	1676
BstYI	RGATCY	1 cut(s)	1858
BstZ17I	GTATAC	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	1492
BsuI	GTATCC	2 cut(s)	190, 1400
BsuRI	GGCC	2 cut(s)	313, 1621
BsuTUI	ATCGAT	1 cut(s)	1492
BtgI	CCRYGG	2 cut(s)	564, 1918
BtgZI	GCGATG	1 cut(s)	1344
BtsCI	GGATG	4 cut(s)	609, 1354, 1846, 2031
BtsI	GCAGTG	2 cut(s)	556, 1842
BtsIMutI	CAGTG	6 cut(s)	556, 765, 780, 818, 1751, 1842
BveI	ACCTGC	2 cut(s)	59, 1237
Cac8I	GCNNGC	7 cut(s)	168, 509, 949, 1180, 1425, 1623, 1994
CfoI	GCGC	6 cut(s)	349, 533, 602, 628, 698, 2050
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	4 cut(s)	282, 801, 1586, 1619
ClaI	ATCGAT	1 cut(s)	1492
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	5 cut(s)	453, 588, 990, 1169, 2066
CviQI	GTAC	5 cut(s)	453, 588, 990, 1169, 2066
DdeI	CTNAG	4 cut(s)	534, 875, 1640, 1703
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	6 cut(s)	1193, 1491, 1495, 1790, 1848, 1860
DpnII	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
DraI	TTTAAA	1 cut(s)	1554
DraIII	CACNNNGTG	1 cut(s)	847
DriI	GACNNNNNGTC	1 cut(s)	1027
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	734, 1058
Eam1105I	GACNNNNNGTC	1 cut(s)	1027
EarI	CTCTTC	2 cut(s)	734, 1058
Eco105I	TACGTA	1 cut(s)	2065
Eco130I	CCWWGG	6 cut(s)	295, 341, 405, 564, 1651, 1918
Eco47I	GGWCC	3 cut(s)	282, 801, 1586
Eco57I	CTGAAG	1 cut(s)	1502
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	1586
EcoRI	GAATTC	1 cut(s)	1802
EcoRII	CCWGG	2 cut(s)	591, 797
EcoT14I	CCWWGG	6 cut(s)	295, 341, 405, 564, 1651, 1918
EcoT22I	ATGCAT	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
ErhI	CCWWGG	6 cut(s)	295, 341, 405, 564, 1651, 1918
FalI	AAGNNNNNCTT	6 cut(s)	846, 878, 858, 890, 1436, 1468
FaqI	GGGAC	1 cut(s)	1358
FauI	CCCGC	2 cut(s)	1390, 1572
FauNDI	CATATG	1 cut(s)	1139
FbaI	TGATCA	1 cut(s)	1846
FblI	GTMKAC	2 cut(s)	240, 1206
Fnu4HI	GCNGC	5 cut(s)	603, 659, 715, 1244, 1974
FokI	GGATG	4 cut(s)	596, 1361, 1853, 2038
Fsp4HI	GCNGC	5 cut(s)	603, 659, 715, 1244, 1974
FspBI	CTAG	5 cut(s)	993, 1712, 1827, 2073, 2106
GlaI	GCGC	6 cut(s)	348, 532, 601, 627, 697, 2049
GluI	GCNGC	5 cut(s)	603, 659, 715, 1244, 1974
GsuI	CTGGAG	1 cut(s)	614
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	313, 1621
HapII	CCGG	2 cut(s)	180, 1172
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	6 cut(s)	349, 533, 602, 628, 698, 2050
Hin1I	GRCGYC	1 cut(s)	347
Hin6I	GCGC	6 cut(s)	347, 531, 600, 626, 696, 2048
HinP1I	GCGC	6 cut(s)	347, 531, 600, 626, 696, 2048
HincII	GTYRAC	2 cut(s)	304, 1693
HindII	GTYRAC	2 cut(s)	304, 1693
HindIII	AAGCTT	2 cut(s)	22, 1176
HpaI	GTTAAC	1 cut(s)	1693
HpaII	CCGG	2 cut(s)	180, 1172
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	6 cut(s)	241, 304, 1207, 1607, 1693, 1824
Hpy188I	TCNGA	6 cut(s)	805, 912, 1033, 1057, 1641, 1904
Hpy188III	TCNNGA	8 cut(s)	326, 412, 863, 1154, 1226, 1865, 1892, 2124
Hpy8I	GTNNAC	6 cut(s)	241, 304, 1207, 1607, 1693, 1824
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	9 cut(s)	234, 409, 529, 586, 647, 846, 860, 1477, 2023
HpyCH4III	ACNGT	4 cut(s)	982, 1072, 1319, 1355
HpyCH4IV	ACGT	3 cut(s)	1528, 1941, 2064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 1841
HpyF3I	CTNAG	4 cut(s)	534, 875, 1640, 1703
HpySE526I	ACGT	3 cut(s)	1528, 1941, 2064
Hsp92I	GRCGYC	1 cut(s)	347
HspAI	GCGC	6 cut(s)	347, 531, 600, 626, 696, 2048
KasI	GGCGCC	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	1172
Ksp22I	TGATCA	1 cut(s)	1846
KspAI	GTTAAC	1 cut(s)	1693
Kzo9I	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
LmnI	GCTCC	4 cut(s)	158, 263, 732, 1394
Lsp1109I	GCAGC	5 cut(s)	614, 645, 701, 1255, 1960
LweI	GCATC	2 cut(s)	872, 1831
MaeI	CTAG	5 cut(s)	993, 1712, 1827, 2073, 2106
MaeII	ACGT	3 cut(s)	1528, 1941, 2064
MaeIII	GTNAC	3 cut(s)	13, 1433, 1870
MalI	GATC	6 cut(s)	1193, 1491, 1495, 1790, 1848, 1860
MbiI	CCGCTC	2 cut(s)	203, 1397
MboI	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
MflI	RGATCY	1 cut(s)	1858
MhlI	GDGCHC	2 cut(s)	252, 486
MlsI	TGGCCA	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	313
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	6 cut(s)	907, 914, 1130, 1166, 1580, 1630
MmeI	TCCRAC	3 cut(s)	828, 1011, 1689
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	168
MroXI	GAANNNNTTC	2 cut(s)	24, 575
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	6 cut(s)	332, 1106, 1443, 1553, 1692, 2018
MslI	CAYNNNNRTG	1 cut(s)	1614
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	2 cut(s)	180, 1172
MspR9I	CCNGG	2 cut(s)	593, 799
Mva1269I	GAATGC	1 cut(s)	1567
MvaI	CCWGG	2 cut(s)	593, 799
MvnI	CGCG	3 cut(s)	531, 626, 628
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 1841
NarI	GGCGCC	1 cut(s)	347
NcoI	CCATGG	2 cut(s)	564, 1918
NdeI	CATATG	1 cut(s)	1139
NdeII	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
NlaIV	GGNNCC	7 cut(s)	259, 348, 467, 485, 728, 1170, 1337
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	4 cut(s)	43, 170, 1238, 1728
PaeI	GCATGC	1 cut(s)	170
PaqCI	CACCTGC	2 cut(s)	59, 1237
PciI	ACATGT	3 cut(s)	39, 1234, 1724
PcsI	WCGNNNNNNNCGW	1 cut(s)	1498
PctI	GAATGC	1 cut(s)	1567
PdmI	GAANNNNTTC	2 cut(s)	24, 575
PfeI	GAWTC	5 cut(s)	770, 817, 1004, 1255, 1895
PkrI	GCNGC	5 cut(s)	604, 660, 716, 1245, 1975
PleI	GAGTC	6 cut(s)	907, 913, 1129, 1165, 1579, 1630
PluTI	GGCGCC	1 cut(s)	350
PpsI	GAGTC	6 cut(s)	907, 913, 1129, 1165, 1579, 1630
Ppu21I	YACGTR	1 cut(s)	2065
PpuMI	RGGWCCY	1 cut(s)	1586
PscI	ACATGT	3 cut(s)	39, 1234, 1724
PshBI	ATTAAT	1 cut(s)	1106
Psp1406I	AACGTT	1 cut(s)	1528
Psp5II	RGGWCCY	1 cut(s)	1586
Psp6I	CCWGG	2 cut(s)	591, 797
PspGI	CCWGG	2 cut(s)	591, 797
PspN4I	GGNNCC	7 cut(s)	259, 348, 467, 485, 728, 1170, 1337
PspPI	GGNCC	4 cut(s)	282, 801, 1586, 1619
PspPPI	RGGWCCY	1 cut(s)	1586
PstI	CTGCAG	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	1858
RsaI	GTAC	5 cut(s)	454, 589, 991, 1170, 2067
RsaNI	GTAC	5 cut(s)	453, 588, 990, 1169, 2066
RseI	CAYNNNNRTG	1 cut(s)	1614
SaqAI	TTAA	6 cut(s)	332, 1106, 1443, 1553, 1692, 2018
SatI	GCNGC	5 cut(s)	603, 659, 715, 1244, 1974
Sau3AI	GATC	6 cut(s)	1191, 1489, 1493, 1788, 1846, 1858
Sau96I	GGNCC	4 cut(s)	282, 801, 1586, 1619
ScaI	AGTACT	1 cut(s)	991
SchI	GAGTC	6 cut(s)	907, 914, 1130, 1166, 1580, 1630
ScrFI	CCNGG	2 cut(s)	593, 799
SduI	GDGCHC	2 cut(s)	252, 486
SfaNI	GCATC	2 cut(s)	872, 1831
SfcI	CTRYAG	1 cut(s)	659
SfoI	GGCGCC	1 cut(s)	348
SinI	GGWCC	3 cut(s)	282, 801, 1586
SmiMI	CAYNNNNRTG	1 cut(s)	1614
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	2065
SpeI	ACTAGT	1 cut(s)	1826
SphI	GCATGC	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	346
SspMI	CTAG	5 cut(s)	993, 1712, 1827, 2073, 2106
StyD4I	CCNGG	2 cut(s)	591, 797
StyI	CCWWGG	6 cut(s)	295, 341, 405, 564, 1651, 1918
TaaI	ACNGT	4 cut(s)	982, 1072, 1319, 1355
TaiI	ACGT	3 cut(s)	1531, 1944, 2067
TaqI	TCGA	4 cut(s)	1110, 1253, 1492, 1935
TatI	WGTACW	1 cut(s)	989
TfiI	GAWTC	5 cut(s)	770, 817, 1004, 1255, 1895
Tru1I	TTAA	6 cut(s)	332, 1106, 1443, 1553, 1692, 2018
Tru9I	TTAA	6 cut(s)	332, 1106, 1443, 1553, 1692, 2018
TscAI	CASTG	6 cut(s)	563, 772, 780, 818, 1751, 1842
TseI	GCWGC	5 cut(s)	602, 658, 714, 1243, 1973
TspDTI	ATGAA	9 cut(s)	368, 1076, 1118, 1582, 1877, 1944, 1970, 1975, 2042
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	6 cut(s)	563, 772, 780, 818, 1751, 1842
VpaK11BI	GGWCC	3 cut(s)	282, 801, 1586
VspI	ATTAAT	1 cut(s)	1106
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	134, 1802
XceI	RCATGY	4 cut(s)	43, 170, 1238, 1728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1676
XmiI	GTMKAC	2 cut(s)	240, 1206
XmnI	GAANNNNTTC	2 cut(s)	24, 575
XspI	CTAG	5 cut(s)	993, 1712, 1827, 2073, 2106
ZrmI	AGTACT	1 cut(s)	991
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.