Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Reverse (-)

286224 .. 288853

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGAGACTAGATGCAAATTTTGGCTTCCTAAAAAGAAGAGATTTTGTGCAAATATCCCCCTCAACGAATCTTTATTCTGTGGCAACCACACACCCAGGTCCGATAGCCAGTGGATTCCATGCCCAATAGACCCTTCTCACTCTGTACTTAAAGAGAATCTTGAAGGACATGTTAGAAGATGCCCATTACTTAAACAAGTGCAGTATTTGACTCTCCAACCCTTTTACCAAAAAGGTATCAATGCTGGCAAAGAAGAGGACCAAGAAGAATTAGAAACATTCAGACCCAAAGGAGCCGATGGTTTGGAATCTTCTAATGATCCCGCGTTGGGGTCTTTGGATAACATTCTTTCAGAAATGAAGAGGAATGCTGTTTATAGTATGACTGTACTTGATTTTTATAAATTAATTGAGAAAATTGAGCATGTTCATGAATCTATATGCAAGGATATTCAGGACTCATATAAGGTACCGGAAGCTTGTGGAATATGGATTAAACGGGAGGTTGACAGAAAATTGCCATTTCAAGAGAAACATGTTATGCAGCAGGTGTCCATTCTTGGGAACTTGGAAGGTCTTGGTGTATTGAAGAGTTCTCTAGGTAAGGAGAGGGCGGATTATGATGATGGCACTGGTATCCCTGCGGTGGTTGAGTTTGGAGCCGGGAGGGGATACTTGACACAGATGCTGGCAGATTGTTATGGGATAAAAAAGGTGTTTCTGGTTGAAAGAAAATCATACAAGTTAAAGGCTGATCGATCCTTGCGACAGAAAGAGAGCTTGATTTTGCAACGTTTGAGAATTGACATTGAGGATTTAAACTTGAATGCCGTTGAGTCATTGCGGGAAGATCCTTACCTGGCTATTGGAAAACATCTTTGTGGGCCTGCAACAGATCTGACTTTGAGATGCTGCCTTGGTGAACACAGTAATCAAAGTAATGCTGAATTGAACAGTGTTAACCCAAACCTGAGAGGTCTGGCTATAGCAACGTGTTGCCATCATCTCTGCCAGTGGAAGCACTACATAAATAAAAAATATCTATTAGAGTTGGGCATCACAAAAGAGGAATTTCATGCAATTACTTGGTTTACTAGTTGGGCTGTAGATGCTGATCACGGTGCCGATCTCCCAGATGTTACTGATTGCAAATTGCATCTTGAATCTATTGAAAAGAAGCAATGCGGTGAGGATTATGGAGTTGAAGAGATTGTGAGAAATATGAAGGCAGTTGAAAGGGCTGTGTTAGGGTTTATGTGCAAGAAGATTATAGACATGGGTAGGTTGATGTGGATGAAGGAACATGGCTTAGACGCACGGTTTGTCAAATACGTCCCATCCAGCGTTTCTCCTGAAAACCATCTATTGATTGGTAGATGCCCCAATCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

465

Amino Acids

52.85

Weight (kDa)

6.63

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	538
Acc65I	GGTACC	1 cut(s)	469
AccB1I	GGYRCC	2 cut(s)	469, 1121
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	324, 614, 644, 844, 1185
AclI	AACGTT	1 cut(s)	793
AclWI	GGATC	3 cut(s)	314, 753, 845
AcsI	RAATTY	2 cut(s)	17, 1070
AfaI	GTAC	3 cut(s)	147, 390, 471
AfiI	CCNNNNNNNGG	4 cut(s)	329, 330, 561, 646
AflIII	ACRYGT	3 cut(s)	169, 535, 992
AhlI	ACTAGT	1 cut(s)	1094
AjnI	CCWGG	2 cut(s)	95, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	2 cut(s)	479, 780
AluI	AGCT	2 cut(s)	479, 780
AlwI	GGATC	3 cut(s)	314, 753, 845
AlwNI	CAGNNNCTG	1 cut(s)	688
AoxI	GGCC	1 cut(s)	884
ApeKI	GCWGC	2 cut(s)	544, 912
ApoI	RAATTY	2 cut(s)	17, 1070
ArsI	GACNNNNNNTTYG	2 cut(s)	1304, 1336
AseI	ATTAAT	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	99, 259, 884
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	2 cut(s)	932, 1199
AvaII	GGWCC	2 cut(s)	99, 259
BanI	GGYRCC	2 cut(s)	469, 1121
BbvI	GCAGC	2 cut(s)	556, 899
BccI	CCATC	5 cut(s)	293, 620, 1008, 1345, 1368
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	2 cut(s)	97, 860
BciVI	GTATCC	2 cut(s)	647, 665
BclI	TGATCA	1 cut(s)	1114
BcnI	CCSGG	1 cut(s)	664
BcuI	ACTAGT	1 cut(s)	1094
BfaI	CTAG	3 cut(s)	9, 599, 1095
BfmI	CTRYAG	2 cut(s)	984, 1104
BfuAI	ACCTGC	1 cut(s)	538
BfuI	GTATCC	2 cut(s)	647, 665
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	2 cut(s)	545, 913
BlsI	GCNGC	2 cut(s)	546, 914
Bme1390I	CCNGG	3 cut(s)	97, 664, 860
Bme18I	GGWCC	2 cut(s)	99, 259
BmgT120I	GGNCC	3 cut(s)	99, 259, 884
BmiI	GGNNCC	4 cut(s)	295, 471, 661, 1123
BmrFI	CCNGG	3 cut(s)	97, 664, 860
BmsI	GCATC	8 cut(s)	2, 170, 675, 899, 1065, 1099, 1165, 1367
BpuMI	CCSGG	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaJI	CCNNGG	2 cut(s)	95, 916
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 330, 561, 646
Bse1I	ACTGG	3 cut(s)	109, 637, 1012
Bse3DI	GCAATG	2 cut(s)	839, 1187
Bse8I	GATNNNNATC	1 cut(s)	1113
BseBI	CCWGG	2 cut(s)	97, 860
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	95, 916
BseGI	GGATG	2 cut(s)	1299, 1337
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	4 cut(s)	329, 330, 561, 646
BseMI	GCAATG	2 cut(s)	839, 1187
BseMII	CTCAG	1 cut(s)	962
BseNI	ACTGG	3 cut(s)	109, 637, 1012
BseXI	GCAGC	2 cut(s)	556, 899
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	886
BshNI	GGYRCC	2 cut(s)	469, 1121
BshVI	ATCGAT	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	473, 663
BslFI	GGGAC	1 cut(s)	1319
BslI	CCNNNNNNNGG	4 cut(s)	329, 330, 561, 646
BsmFI	GGGAC	1 cut(s)	1319
BsmI	GAATGC	2 cut(s)	373, 832
BsnI	GGCC	1 cut(s)	886
Bsp143I	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
BspACI	CCGC	5 cut(s)	324, 614, 644, 844, 1185
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	1 cut(s)	963
BspDI	ATCGAT	1 cut(s)	757
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	295, 471, 661, 1123
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	3 cut(s)	314, 753, 845
BspT107I	GGYRCC	2 cut(s)	469, 1121
BsrDI	GCAATG	2 cut(s)	839, 1187
BsrI	ACTGG	3 cut(s)	109, 637, 1012
BssECI	CCNNGG	2 cut(s)	95, 916
BssMI	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
BssT1I	CCWWGG	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	97, 860
Bst4CI	ACNGT	5 cut(s)	388, 929, 956, 1121, 1320
Bst6I	CTCTTC	5 cut(s)	32, 249, 356, 584, 1200
BstC8I	GCNNGC	3 cut(s)	247, 690, 888
BstDEI	CTNAG	2 cut(s)	971, 1309
BstF5I	GGATG	2 cut(s)	1299, 1337
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	7 cut(s)	322, 757, 761, 853, 898, 1117, 1129
BstMBI	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
BstMWI	GCNNNNNNNGC	1 cut(s)	1109
BstNI	CCWGG	2 cut(s)	97, 860
BstNSI	RCATGY	3 cut(s)	173, 428, 539
BstSCI	CCNGG	3 cut(s)	95, 662, 858
BstSFI	CTRYAG	2 cut(s)	984, 1104
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	556, 899
BstX2I	RGATCY	2 cut(s)	850, 895
BstYI	RGATCY	2 cut(s)	850, 895
Bsu15I	ATCGAT	1 cut(s)	757
BsuI	GTATCC	2 cut(s)	647, 665
BsuRI	GGCC	1 cut(s)	886
BsuTUI	ATCGAT	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	1299, 1337
BtsIMutI	CAGTG	4 cut(s)	116, 630, 961, 1019
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	3 cut(s)	247, 690, 888
CaiI	CAGNNNCTG	1 cut(s)	688
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	3 cut(s)	99, 259, 884
ClaI	ATCGAT	1 cut(s)	757
CseI	GACGC	1 cut(s)	1322
Csp6I	GTAC	3 cut(s)	146, 389, 470
CviAII	CATG	8 cut(s)	120, 170, 425, 431, 536, 1076, 1276, 1304
CviQI	GTAC	3 cut(s)	146, 389, 470
DdeI	CTNAG	2 cut(s)	971, 1309
DpnI	GATC	7 cut(s)	321, 756, 760, 852, 897, 1116, 1128
DpnII	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
DraI	TTTAAA	1 cut(s)	819
Eam1104I	CTCTTC	5 cut(s)	32, 249, 356, 584, 1200
EarI	CTCTTC	5 cut(s)	32, 249, 356, 584, 1200
EciI	GGCGGA	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	99, 259
EcoRII	CCWGG	2 cut(s)	95, 858
EcoT14I	CCWWGG	1 cut(s)	916
ErhI	CCWWGG	1 cut(s)	916
FaeI	CATG	8 cut(s)	123, 173, 428, 434, 539, 1079, 1279, 1307
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	1319
FatI	CATG	8 cut(s)	119, 169, 424, 430, 535, 1075, 1275, 1303
FauI	CCCGC	2 cut(s)	331, 837
FbaI	TGATCA	1 cut(s)	1114
Fnu4HI	GCNGC	2 cut(s)	545, 913
FokI	GGATG	2 cut(s)	1306, 1324
Fsp4HI	GCNGC	2 cut(s)	545, 913
FspBI	CTAG	3 cut(s)	9, 599, 1095
GluI	GCNGC	2 cut(s)	545, 913
HaeIII	GGCC	1 cut(s)	886
HapII	CCGG	2 cut(s)	473, 663
HgaI	GACGC	1 cut(s)	1322
Hin1II	CATG	8 cut(s)	123, 173, 428, 434, 539, 1079, 1279, 1307
HincII	GTYRAC	2 cut(s)	508, 961
HindII	GTYRAC	2 cut(s)	508, 961
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	9 cut(s)	68, 115, 157, 211, 308, 434, 458, 836, 1163
HpaI	GTTAAC	1 cut(s)	961
HpaII	CCGG	2 cut(s)	473, 663
HphI	GGTGA	2 cut(s)	932, 1199
Hpy166II	GTNNAC	4 cut(s)	508, 923, 961, 1092
Hpy188I	TCNGA	4 cut(s)	103, 284, 355, 900
Hpy188III	TCNNGA	6 cut(s)	161, 431, 455, 527, 1160, 1352
Hpy8I	GTNNAC	4 cut(s)	508, 923, 961, 1092
HpyAV	CCTTC	5 cut(s)	144, 158, 566, 1219, 1291
HpyCH4III	ACNGT	5 cut(s)	388, 929, 956, 1121, 1320
HpyCH4IV	ACGT	3 cut(s)	793, 992, 1332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1109
HpyF3I	CTNAG	2 cut(s)	971, 1309
HpySE526I	ACGT	3 cut(s)	793, 992, 1332
Hsp92II	CATG	8 cut(s)	123, 173, 428, 434, 539, 1079, 1279, 1307
KpnI	GGTACC	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	1114
KspAI	GTTAAC	1 cut(s)	961
Kzo9I	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
LmnI	GCTCC	2 cut(s)	293, 659
Lsp1109I	GCAGC	2 cut(s)	556, 899
LweI	GCATC	8 cut(s)	2, 170, 675, 899, 1065, 1099, 1165, 1367
MaeI	CTAG	3 cut(s)	9, 599, 1095
MaeII	ACGT	3 cut(s)	793, 992, 1332
MaeIII	GTNAC	1 cut(s)	1138
MalI	GATC	7 cut(s)	321, 756, 760, 852, 897, 1116, 1128
MboI	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
MflI	RGATCY	2 cut(s)	850, 895
MlyI	GAGTC	3 cut(s)	205, 452, 845
MmeI	TCCRAC	1 cut(s)	241
MseI	TTAA	7 cut(s)	150, 192, 407, 495, 746, 818, 960
MslI	CAYNNNNRTG	2 cut(s)	429, 879
MspI	CCGG	2 cut(s)	473, 663
MspR9I	CCNGG	3 cut(s)	97, 664, 860
Mva1269I	GAATGC	2 cut(s)	373, 832
MvaI	CCWGG	2 cut(s)	97, 860
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	1109
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
NlaIII	CATG	8 cut(s)	123, 173, 428, 434, 539, 1079, 1279, 1307
NlaIV	GGNNCC	4 cut(s)	295, 471, 661, 1123
NspI	RCATGY	3 cut(s)	173, 428, 539
PagI	TCATGA	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	538
PciI	ACATGT	2 cut(s)	169, 535
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PctI	GAATGC	2 cut(s)	373, 832
PfeI	GAWTC	6 cut(s)	68, 115, 157, 308, 434, 1163
PkrI	GCNGC	2 cut(s)	546, 914
PleI	GAGTC	3 cut(s)	205, 452, 844
PpsI	GAGTC	3 cut(s)	205, 452, 844
PscI	ACATGT	2 cut(s)	169, 535
PshBI	ATTAAT	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	793
Psp6I	CCWGG	2 cut(s)	95, 858
PspGI	CCWGG	2 cut(s)	95, 858
PspN4I	GGNNCC	4 cut(s)	295, 471, 661, 1123
PspPI	GGNCC	3 cut(s)	99, 259, 884
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	850, 895
RsaI	GTAC	3 cut(s)	147, 390, 471
RsaNI	GTAC	3 cut(s)	146, 389, 470
RseI	CAYNNNNRTG	2 cut(s)	429, 879
SaqAI	TTAA	7 cut(s)	150, 192, 407, 495, 746, 818, 960
SatI	GCNGC	2 cut(s)	545, 913
Sau3AI	GATC	7 cut(s)	319, 754, 758, 850, 895, 1114, 1126
Sau96I	GGNCC	3 cut(s)	99, 259, 884
SchI	GAGTC	3 cut(s)	205, 452, 845
ScrFI	CCNGG	3 cut(s)	97, 664, 860
SfaNI	GCATC	8 cut(s)	2, 170, 675, 899, 1065, 1099, 1165, 1367
SfcI	CTRYAG	2 cut(s)	984, 1104
SinI	GGWCC	2 cut(s)	99, 259
SmiMI	CAYNNNNRTG	2 cut(s)	429, 879
SpeI	ACTAGT	1 cut(s)	1094
SsiI	CCGC	5 cut(s)	324, 614, 644, 844, 1185
SspMI	CTAG	3 cut(s)	9, 599, 1095
StyD4I	CCNGG	3 cut(s)	95, 662, 858
StyI	CCWWGG	1 cut(s)	916
TaaI	ACNGT	5 cut(s)	388, 929, 956, 1121, 1320
TaiI	ACGT	3 cut(s)	796, 995, 1335
TaqI	TCGA	1 cut(s)	757
TatI	WGTACW	2 cut(s)	145, 388
TfiI	GAWTC	6 cut(s)	68, 115, 157, 308, 434, 1163
Tru1I	TTAA	7 cut(s)	150, 192, 407, 495, 746, 818, 960
Tru9I	TTAA	7 cut(s)	150, 192, 407, 495, 746, 818, 960
TscAI	CASTG	4 cut(s)	116, 637, 961, 1019
TseI	GCWGC	2 cut(s)	544, 912
TspDTI	ATGAA	6 cut(s)	374, 419, 447, 1064, 1238, 1310
TspRI	CASTG	4 cut(s)	116, 637, 961, 1019
VpaK11BI	GGWCC	2 cut(s)	99, 259
VspI	ATTAAT	1 cut(s)	407
XapI	RAATTY	2 cut(s)	17, 1070
XceI	RCATGY	3 cut(s)	173, 428, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1367
XspI	CTAG	3 cut(s)	9, 599, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.