Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8193526.1

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 547

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8193526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaagaggactgtttatagtatgtctgtgcctgatttctataaattaatcgaaaaaattgagtctgttcataagtccatatgcaaggatattcaggagtcgtataaggaaccggaagcttgcggaatgtggatcaaaagagaggtagacagaaaattgccatttcaagagaaacatgttatgcagcaggtgtcgattcttggaaacatggaagacgttgggttaataaagagttccatagcaaaggagagggctgactgtgatgatagcaatggtttccctgtgagggatgactgtgattatagcaatggtgtccctgcggtggttgagtttggagcggggagaggatacttgacacaaatgctggcagattgttatggcattaaaagggtctttttggttgaaaggaagtcatacaagctgaaggtgagtttatacaatgtatccttttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

151

Amino Acids

17.3

Weight (kDa)

7.58

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	3 cut(s)	123, 320, 338
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	286, 322
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	167, 404
AluBI	AGCT	2 cut(s)	119, 421
AluI	AGCT	2 cut(s)	119, 421
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	196
BciVI	GTATCC	2 cut(s)	341, 454
BfuAI	ACCTGC	1 cut(s)	178
BfuI	GTATCC	2 cut(s)	341, 454
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 322
Bse3DI	GCAATG	2 cut(s)	277, 313
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	286, 322
BseMI	GCAATG	2 cut(s)	277, 313
BseXI	GCAGC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	286, 322
BsmFI	GGGAC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	123, 320, 338
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	277, 313
BssMI	GATC	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	13, 260, 296
BstC8I	GCNNGC	2 cut(s)	121, 366
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	219
BsuI	GTATCC	2 cut(s)	341, 454
BtsCI	GGATG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	121, 366
CviAII	CATG	2 cut(s)	176, 208
CviJI	RGCY	3 cut(s)	119, 254, 421
CviKI_1	RGCY	3 cut(s)	119, 254, 421
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	443
FaeI	CATG	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	175, 207
FauI	CCCGC	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	185
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	179, 211
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	3 cut(s)	62, 98, 196
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	95, 167
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	13, 260, 296
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	84, 184
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	179, 211
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	7 cut(s)	45, 80, 126, 173, 294, 330, 350
Lsp1109I	GCAGC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	216
MalI	GATC	1 cut(s)	134
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	1 cut(s)	132
MboII	GAAGA	2 cut(s)	16, 224
MluCI	AATT	3 cut(s)	44, 57, 155
MlyI	GAGTC	2 cut(s)	71, 107
MnlI	CCTC	4 cut(s)	136, 243, 279, 338
MseI	TTAA	3 cut(s)	47, 224, 384
MspI	CCGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	179, 211
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	179
PaqCI	CACCTGC	1 cut(s)	178
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	70, 106
PpsI	GAGTC	2 cut(s)	70, 106
PscI	ACATGT	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	47, 224, 384
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	71, 107
SetI	ASST	6 cut(s)	121, 147, 192, 219, 423, 429
Sse9I	AATT	3 cut(s)	44, 57, 155
SsiI	CCGC	3 cut(s)	123, 320, 338
TaaI	ACNGT	3 cut(s)	13, 260, 296
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	51, 194
TasI	AATT	3 cut(s)	44, 57, 155
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	47, 224, 384
Tru9I	TTAA	3 cut(s)	47, 224, 384
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	17, 59
VspI	ATTAAT	1 cut(s)	47
XceI	RCATGY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.