Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023880.1

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2567

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023880.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 721 bp

ctgactcaccagcccttttaccaaaagggtatcaatgctggcaaagaagaagaccaacaagaaatagaaacagccagtagtactagattggaggattcggcattggctgatgaccccaagtcggaggctttcggtcacattctttcagagatgaagaggactgtttatagtatgtctgtgcctgatttctataaattaatcgaaaaaattgagtctgttcataagtccatatgcaaggatattcaggagtcgtataaggaaccggaagcttgcggaatgtggatcaaaagagaggtagacagaaaattgccatttcaagagaaacatgttatgcagcaggtgtcgattcttggaaacatggaagacgttgggttaataaagagttccatagcaaaggagagggctgactgtgatgatagcaatggtttccctgtgagggatgactgtgattatagcaatggtgtccctgcggtggttgagtttggagcggggagaggatacttgacacaaatgctggcagattgttatggcattaaaagggtctttttggttgaaaggaagtcatacaagctgaaggctgatcgatccttgcgacagaaagagagcttgatactgcaacgtttgagaattgacattgaggatttaaacctgaatgccgttgagtcattgcgggaaggtcctttcatttctatcggtaaacatctttgtggacctgcaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

5.52

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	4 cut(s)	273, 470, 488, 670
AclI	AACGTT	1 cut(s)	619
AclWI	GGATC	2 cut(s)	290, 579
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	121, 436, 472
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	317, 554
AhdI	GACNNNNNGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	269, 571, 606
AluI	AGCT	3 cut(s)	269, 571, 606
AlwI	GGATC	2 cut(s)	290, 579
ApeKI	GCWGC	1 cut(s)	334
AseI	ATTAAT	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	677, 710
AvaII	GGWCC	2 cut(s)	677, 710
BbsI	GAAGAC	2 cut(s)	57, 369
BbvI	GCAGC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	641
BciVI	GTATCC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	82
Bme18I	GGWCC	2 cut(s)	677, 710
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	677, 710
BmiI	GGNNCC	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	57, 369
Bsa29I	ATCGAT	1 cut(s)	583
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 436, 472
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	3 cut(s)	427, 463, 665
BseCI	ATCGAT	1 cut(s)	583
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	3 cut(s)	121, 436, 472
BseMI	GCAATG	3 cut(s)	427, 463, 665
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	121, 436, 472
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	282, 580, 584
BspACI	CCGC	4 cut(s)	273, 470, 488, 670
BspDI	ATCGAT	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	290, 579
BsrBI	CCGCTC	1 cut(s)	488
BsrDI	GCAATG	3 cut(s)	427, 463, 665
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	282, 580, 584
Bst4CI	ACNGT	3 cut(s)	163, 410, 446
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	40, 271, 516
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	285, 583, 587
BstMBI	GATC	3 cut(s)	282, 580, 584
BstNSI	RCATGY	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	2 cut(s)	57, 369
Bsu15I	ATCGAT	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	40, 271, 516
Cfr13I	GGNCC	2 cut(s)	677, 710
ClaI	ATCGAT	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	326, 358
CviJI	RGCY	9 cut(s)	13, 74, 107, 128, 269, 404, 571, 578, 606
CviKI_1	RGCY	9 cut(s)	13, 74, 107, 128, 269, 404, 571, 578, 606
CviQI	GTAC	1 cut(s)	81
DpnI	GATC	3 cut(s)	284, 582, 586
DpnII	GATC	3 cut(s)	282, 580, 584
DraI	TTTAAA	1 cut(s)	645
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	149
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	677, 710
Eco57I	CTGAAG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	677
FaeI	CATG	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	325, 357
FauI	CCCGC	2 cut(s)	481, 663
FauNDI	CATATG	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	335
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	329, 361
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	6 cut(s)	4, 95, 212, 248, 346, 662
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	298, 698, 710
Hpy188I	TCNGA	2 cut(s)	124, 148
Hpy188III	TCNNGA	2 cut(s)	245, 317
Hpy8I	GTNNAC	3 cut(s)	298, 698, 710
HpyAV	CCTTC	2 cut(s)	568, 668
HpyCH4III	ACNGT	3 cut(s)	163, 410, 446
HpyCH4IV	ACGT	2 cut(s)	366, 619
HpyCH4V	TGCA	4 cut(s)	234, 334, 616, 716
HpySE526I	ACGT	2 cut(s)	366, 619
Hsp92II	CATG	2 cut(s)	329, 361
Kzo9I	GATC	3 cut(s)	282, 580, 584
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	366, 619
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	284, 582, 586
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	3 cut(s)	282, 580, 584
MboII	GAAGA	4 cut(s)	59, 62, 166, 374
MluCI	AATT	4 cut(s)	194, 207, 305, 627
MlyI	GAGTC	3 cut(s)	221, 257, 671
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	85, 118, 150, 286, 393, 429, 488, 631
MseI	TTAA	4 cut(s)	197, 374, 534, 644
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	658
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	3 cut(s)	282, 580, 584
NlaIII	CATG	2 cut(s)	329, 361
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	329
PaqCI	CACCTGC	1 cut(s)	328
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	589
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	95, 346
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	3 cut(s)	220, 256, 670
PpsI	GAGTC	3 cut(s)	220, 256, 670
PpuMI	RGGWCCY	1 cut(s)	677
PscI	ACATGT	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	677
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	677, 710
PspPPI	RGGWCCY	1 cut(s)	677
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	197, 374, 534, 644
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	3 cut(s)	282, 580, 584
Sau96I	GGNCC	2 cut(s)	677, 710
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	3 cut(s)	221, 257, 671
SinI	GGWCC	2 cut(s)	677, 710
SmiMI	CAYNNNNRTG	1 cut(s)	705
Sse9I	AATT	4 cut(s)	194, 207, 305, 627
SsiI	CCGC	4 cut(s)	273, 470, 488, 670
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	163, 410, 446
TaiI	ACGT	2 cut(s)	369, 622
TaqI	TCGA	3 cut(s)	201, 344, 583
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	194, 207, 305, 627
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	95, 346
Tru1I	TTAA	4 cut(s)	197, 374, 534, 644
Tru9I	TTAA	4 cut(s)	197, 374, 534, 644
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	167, 209, 673
VpaK11BI	GGWCC	2 cut(s)	677, 710
VspI	ATTAAT	1 cut(s)	197
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.