FvH4_2g02230
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009648
Physical Location & Seq
Forward (+)
1840044 .. 1840934
891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02230.t1

Sequence Viewer

Length: 738 bp
ATGGAGGTTAGGACCAACAAAGGTCGACAGAGAATTGAGATTCGCAAAATACAAGATGACAATAAGAGACAGGTTACATTCTCTAAAAGGAGGTCTGGCCTTTTCAAGAAGGCTAGTGAGCTTTCCATCCTTAGTGGCGCAGAGATTGCGGTAATAGTAGAGTCACCTGGCCGAAAGACTTTCTCTTTCGGCCATCCTTCTGTGCTTACAGTTCTAGATCGTTATGAGAATGAGAACCCTCCCATTGCAAATAATGACAACACTGAGCAGCTCATGGAGGTTGTACGCAGAAGAAAAATGGAGGATCTCATGACGGAGTTGGCTTCTATCAATGAAGACTTGGACATGGAGCTAATAAAGAGTCAGCAGCTTAGTCAACAAGAGACGGTCCGCCAAGCTCAACACTGGTACGAGAGGTTTGTTGACGGAATGAACGACAAAGAACAACTAAATTTTTTTAGGAATACATTGAGGGAGCTACGCGGTAAGGTCGCCCAACATATTGAAATGCTGCAACAAGAACAAGATGAGATGACGCAGCAAAACACTACAATATTGGCAGCTAGTGGGCCATTTGGGGACTTCATGCAGCCGAGTGGGGTCGTTGCTAGGCCGCTTTATAGGGGCGAGTCATCAAGCCACAACACAATCAATCTCAATGATGTTATGTTTCCTTCTCCTCATCTTCACCCTGCTGGACCATTGAATCCGAATCTCGGAACTCCACCGTTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

246

Amino Acids

28.11

Weight (kDa)

6.11

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 1e-22 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 483
AciI CCGC 4 cut(s) 149, 391, 483, 614
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 2 cut(s) 169, 190
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 2 cut(s) 285, 410
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 3 cut(s) 106, 506, 706
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 7 cut(s) 121, 271, 352, 370, 398, 478, 563
AluI AGCT 7 cut(s) 121, 271, 352, 370, 398, 478, 563
Alw26I GTCTC 2 cut(s) 61, 377
AlwI GGATC 1 cut(s) 312
AoxI GGCC 5 cut(s) 97, 169, 190, 569, 611
ApeKI GCWGC 6 cut(s) 268, 367, 511, 538, 560, 589
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 4 cut(s) 12, 388, 569, 698
AsuHPI GGTGA 2 cut(s) 156, 680
AvaII GGWCC 3 cut(s) 12, 388, 698
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 6 cut(s) 280, 379, 498, 550, 572, 601
BccI CCATC 2 cut(s) 134, 201
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 61, 377
BfaI CTAG 4 cut(s) 114, 215, 564, 609
BisI GCNGC 7 cut(s) 269, 368, 512, 539, 561, 590, 614
BlsI GCNGC 7 cut(s) 270, 369, 513, 540, 562, 591, 615
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 3 cut(s) 12, 388, 698
BmgT120I GGNCC 4 cut(s) 12, 388, 569, 698
BmrFI CCNGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 126, 193
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 669
BseXI GCAGC 6 cut(s) 280, 379, 498, 550, 572, 601
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 99, 171, 192, 571, 613
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 61, 377
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 5 cut(s) 99, 171, 192, 571, 613
Bsp143I GATC 2 cut(s) 217, 304
BspACI CCGC 4 cut(s) 149, 391, 483, 614
BspANI GGCC 5 cut(s) 99, 171, 192, 571, 613
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 483
BspHI TCATGA 1 cut(s) 309
BspPI GGATC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 410
BssMI GATC 2 cut(s) 217, 304
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 211, 388, 729
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 131, 264, 371
BstF5I GGATG 2 cut(s) 126, 193
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 220, 307
BstMAI GTCTC 2 cut(s) 61, 377
BstMBI GATC 2 cut(s) 217, 304
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 6 cut(s) 280, 379, 498, 550, 572, 601
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 5 cut(s) 99, 171, 192, 571, 613
BtsCI GGATG 2 cut(s) 126, 193
BtsIMutI CAGTG 2 cut(s) 261, 403
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 4 cut(s) 12, 388, 569, 698
CpoI CGGWCCG 1 cut(s) 388
CseI GACGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 284, 409
CspI CGGWCCG 1 cut(s) 388
CviAII CATG 4 cut(s) 274, 310, 346, 586
CviQI GTAC 2 cut(s) 284, 409
DdeI CTNAG 3 cut(s) 131, 264, 371
DpnI GATC 2 cut(s) 219, 306
DpnII GATC 2 cut(s) 217, 304
EaeI YGGCCR 2 cut(s) 169, 190
EciI GGCGGA 1 cut(s) 380
Eco47I GGWCC 3 cut(s) 12, 388, 698
EcoRII CCWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 4 cut(s) 277, 313, 349, 589
FaiI YATR 8 cut(s) 225, 275, 311, 347, 501, 587, 621, 668
FaqI GGGAC 1 cut(s) 593
FatI CATG 4 cut(s) 273, 309, 345, 585
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 7 cut(s) 269, 368, 512, 539, 561, 590, 614
FokI GGATG 2 cut(s) 113, 180
Fsp4HI GCNGC 7 cut(s) 269, 368, 512, 539, 561, 590, 614
FspBI CTAG 4 cut(s) 114, 215, 564, 609
GlaI GCGC 1 cut(s) 139
GluI GCNGC 7 cut(s) 269, 368, 512, 539, 561, 590, 614
HaeIII GGCC 5 cut(s) 99, 171, 192, 571, 613
HgaI GACGC 1 cut(s) 544
HhaI GCGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 277, 313, 349, 589
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 3 cut(s) 26, 377, 424
HindII GTYRAC 3 cut(s) 26, 377, 424
HinfI GANTC 6 cut(s) 40, 161, 361, 629, 706, 712
HphI GGTGA 2 cut(s) 156, 680
Hpy166II GTNNAC 3 cut(s) 26, 377, 424
Hpy188I TCNGA 2 cut(s) 711, 719
Hpy188III TCNNGA 3 cut(s) 106, 215, 310
Hpy8I GTNNAC 3 cut(s) 26, 377, 424
HpyAV CCTTC 3 cut(s) 103, 207, 684
HpyCH4III ACNGT 3 cut(s) 211, 388, 729
HpyCH4V TGCA 3 cut(s) 248, 514, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 3 cut(s) 131, 264, 371
Hsp92II CATG 4 cut(s) 277, 313, 349, 589
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 217, 304
LmnI GCTCC 2 cut(s) 349, 475
LpnPI CCDG 7 cut(s) 56, 81, 153, 180, 391, 681, 705
Lsp1109I GCAGC 6 cut(s) 280, 379, 498, 550, 572, 601
MaeI CTAG 4 cut(s) 114, 215, 564, 609
MaeIII GTNAC 2 cut(s) 73, 162
MalI GATC 2 cut(s) 219, 306
MboI GATC 2 cut(s) 217, 304
MboII GAAGA 3 cut(s) 303, 347, 677
MflI RGATCY 1 cut(s) 304
MluCI AATT 2 cut(s) 33, 451
MlyI GAGTC 3 cut(s) 170, 370, 638
MnlI CCTC 7 cut(s) 84, 249, 271, 295, 408, 465, 690
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 217, 304
NlaIII CATG 4 cut(s) 277, 313, 349, 589
NmeAIII GCCGAG 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 162
PagI TCATGA 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 3 cut(s) 40, 706, 712
PkrI GCNGC 7 cut(s) 270, 369, 513, 540, 562, 591, 615
PleI GAGTC 3 cut(s) 169, 369, 637
PpsI GAGTC 3 cut(s) 169, 369, 637
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 4 cut(s) 12, 388, 569, 698
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 2 cut(s) 285, 410
RsaNI GTAC 2 cut(s) 284, 409
Rsr2I CGGWCCG 1 cut(s) 388
RsrII CGGWCCG 1 cut(s) 388
SalI GTCGAC 1 cut(s) 24
SatI GCNGC 7 cut(s) 269, 368, 512, 539, 561, 590, 614
Sau3AI GATC 2 cut(s) 217, 304
Sau96I GGNCC 4 cut(s) 12, 388, 569, 698
SchI GAGTC 3 cut(s) 170, 370, 638
ScrFI CCNGG 1 cut(s) 168
SinI GGWCC 3 cut(s) 12, 388, 698
Sse9I AATT 2 cut(s) 33, 451
SsiI CCGC 4 cut(s) 149, 391, 483, 614
SspI AATATT 1 cut(s) 555
SspMI CTAG 4 cut(s) 114, 215, 564, 609
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 211, 388, 729
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 33, 451
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 3 cut(s) 40, 706, 712
TscAI CASTG 2 cut(s) 268, 410
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 6 cut(s) 268, 367, 511, 538, 560, 589
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 348, 446, 574
TspGWI ACGGA 2 cut(s) 329, 441
TspRI CASTG 2 cut(s) 268, 410
VpaK11BI GGWCC 3 cut(s) 12, 388, 698
XapI RAATTY 1 cut(s) 451
XbaI TCTAGA 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 4 cut(s) 114, 215, 564, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.