Rh6AG031500

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009648
Physical Location & Seq
Forward (+)
3874612 .. 3876004
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG031500.1

Sequence Viewer

Length: 663 bp
ATGAAGAAAATAGAAAGGGAGAGTAATTGCCAGGTTACTTTCTCTAAGAGAAAGTCTTGCATTTTCAAAAAGTCGAGTGAGCTAAGCACGCTCACAGGTGCAGAGATCGCCATAATCATAAGTTCTCCCGGAAACAAGACATTCTCATTCGGCCACCCTTCTGTGCAGGCCATCGTTGACCGCTATCTGTCTCCGGCCCCTGAACCCCCAGCTAGCACAGACATCACTGAGAAGTTCTTGGAAAATTTTCGCATCATGAAATTGAACAGTCTCAACGCGGAGTGCACTGCCTTAAATGAGGAGCTGTTGAACTGCAGACAGCAGGGAGAGGTGCTTAAAAGGATTGCGAGGGCTGGCCAGGCTGACGAGTGGTATGGGAGGTCCTTAGACAGCATGGACGAGGAACAACGAGACTCATTTAAGAAAGACTTGATTAAGCTGCATGGTAGTGTGGCTCAACGGTCTAAAGAATGGCATCAAAGGCAAATTGAGCTGATGCAACGGCACGCTGCAATGGGGGCTGCTGGGGGATTCAGGGATTTTATGTCACCGAGTGTCGCCCCTATTTGGTCTTTTCATGAGGGGAGTTCATCGAGCCAGGGTGCGATGCATCCCGATGCTGCTTCATCTTCCTCCTCTTTTTGGCAGGCAATTTGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

220

Amino Acids

24.59

Weight (kDa)

7.72

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 3 - 50 5.6e-19 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 181, 278
AcoI YGGCCR 2 cut(s) 151, 355
AcsI RAATTY 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 567, 642
AgsI TTSAA 3 cut(s) 67, 265, 310
AjnI CCWGG 3 cut(s) 30, 357, 597
AluBI AGCT 5 cut(s) 82, 212, 304, 439, 493
AluI AGCT 5 cut(s) 82, 212, 304, 439, 493
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 3 cut(s) 195, 275, 405
Alw44I GTGCAC 1 cut(s) 283
AoxI GGCC 4 cut(s) 151, 168, 195, 355
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 439, 509, 521, 620
ApoI RAATTY 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 196, 381
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 540
AsuNHI GCTAGC 1 cut(s) 212
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 426, 496, 508, 607
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 518
BciT130I CCWGG 3 cut(s) 32, 359, 599
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 195, 275, 405
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 4 cut(s) 440, 510, 522, 621
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 4 cut(s) 441, 511, 523, 622
Bme1390I CCNGG 4 cut(s) 32, 129, 359, 599
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 196, 381
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 4 cut(s) 32, 129, 359, 599
BmsI GCATC 6 cut(s) 261, 484, 486, 597, 607, 619
BmtI GCTAGC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 598
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 642
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 3 cut(s) 32, 359, 599
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 2 cut(s) 567, 642
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 314, 625
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 4 cut(s) 426, 496, 508, 607
BseYI CCCAGC 2 cut(s) 208, 524
BsgI GTGCAG 2 cut(s) 120, 185
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 4 cut(s) 153, 170, 197, 357
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 129, 194
BslI CCNNNNNNNGG 2 cut(s) 567, 642
BsmAI GTCTC 3 cut(s) 195, 275, 405
BsnI GGCC 4 cut(s) 153, 170, 197, 357
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 83
BspACI CCGC 2 cut(s) 181, 278
BspANI GGCC 4 cut(s) 153, 170, 197, 357
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 1 cut(s) 278
BspHI TCATGA 2 cut(s) 255, 577
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 317
BspOI GCTAGC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 32, 359, 599
Bst4CI ACNGT 2 cut(s) 269, 462
BstC8I GCNNGC 6 cut(s) 89, 168, 214, 355, 507, 648
BstDEI CTNAG 4 cut(s) 45, 83, 228, 385
BstF5I GGATG 1 cut(s) 610
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 3 cut(s) 195, 275, 405
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 6 cut(s) 88, 107, 359, 481, 490, 518
BstNI CCWGG 3 cut(s) 32, 359, 599
BstSCI CCNGG 4 cut(s) 30, 127, 357, 597
BstSFI CTRYAG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 4 cut(s) 426, 496, 508, 607
BsuRI GGCC 4 cut(s) 153, 170, 197, 357
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 225, 285
Cac8I GCNNGC 6 cut(s) 89, 168, 214, 355, 507, 648
CciI TCATGA 2 cut(s) 255, 577
Cfr13I GGNCC 2 cut(s) 196, 381
CviAII CATG 4 cut(s) 256, 394, 443, 578
DdeI CTNAG 4 cut(s) 45, 83, 228, 385
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraIII CACNNNGTG 1 cut(s) 554
EaeI YGGCCR 2 cut(s) 151, 355
Eco47I GGWCC 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 30, 357, 597
EcoT22I ATGCAT 1 cut(s) 612
FaeI CATG 4 cut(s) 259, 397, 446, 581
FaiI YATR 9 cut(s) 113, 119, 257, 375, 395, 444, 545, 579, 661
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 4 cut(s) 255, 393, 442, 577
Fnu4HI GCNGC 4 cut(s) 440, 510, 522, 621
FokI GGATG 1 cut(s) 597
Fsp4HI GCNGC 4 cut(s) 440, 510, 522, 621
FspBI CTAG 1 cut(s) 213
GluI GCNGC 4 cut(s) 440, 510, 522, 621
GsaI CCCAGC 2 cut(s) 212, 528
HaeIII GGCC 4 cut(s) 153, 170, 197, 357
HapII CCGG 2 cut(s) 129, 194
Hin1II CATG 4 cut(s) 259, 397, 446, 581
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 2 cut(s) 413, 531
HpaII CCGG 2 cut(s) 129, 194
HphI GGTGA 1 cut(s) 540
Hpy166II GTNNAC 2 cut(s) 178, 285
Hpy188III TCNNGA 3 cut(s) 256, 578, 614
Hpy8I GTNNAC 2 cut(s) 178, 285
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 269, 462
HpyCH4V TGCA 9 cut(s) 60, 101, 166, 285, 315, 442, 499, 512, 610
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 107, 359, 481, 490, 518
HpyF3I CTNAG 4 cut(s) 45, 83, 228, 385
Hsp92II CATG 4 cut(s) 259, 397, 446, 581
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 4 cut(s) 426, 496, 508, 607
LweI GCATC 6 cut(s) 261, 484, 486, 597, 607, 619
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 34, 546
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 16, 621
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 5 cut(s) 25, 244, 260, 486, 651
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 8 cut(s) 292, 322, 342, 372, 394, 574, 643, 646
Mox20I TGGCCA 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 246
MscI TGGCCA 1 cut(s) 357
MseI TTAA 4 cut(s) 293, 336, 420, 435
MslI CAYNNNNRTG 2 cut(s) 447, 615
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 2 cut(s) 129, 194
MspR9I CCNGG 4 cut(s) 32, 129, 359, 599
MvaI CCWGG 3 cut(s) 32, 359, 599
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 88, 107, 359, 481, 490, 518
NciI CCSGG 1 cut(s) 129
NdeII GATC 1 cut(s) 105
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 259, 397, 446, 581
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 612
PagI TCATGA 2 cut(s) 255, 577
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 531
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 4 cut(s) 441, 511, 523, 622
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 30, 357, 597
PspFI CCCAGC 2 cut(s) 208, 524
PspGI CCWGG 3 cut(s) 30, 357, 597
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 2 cut(s) 196, 381
PspPPI RGGWCCY 1 cut(s) 381
PstI CTGCAG 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 447, 615
SaqAI TTAA 4 cut(s) 293, 336, 420, 435
SatI GCNGC 4 cut(s) 440, 510, 522, 621
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 196, 381
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 4 cut(s) 32, 129, 359, 599
SduI GDGCHC 1 cut(s) 287
SetI ASST 9 cut(s) 36, 84, 100, 214, 306, 333, 383, 441, 495
SfaNI GCATC 6 cut(s) 261, 484, 486, 597, 607, 619
SfcI CTRYAG 1 cut(s) 313
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 447, 615
Sse9I AATT 5 cut(s) 25, 244, 260, 486, 651
SsiI CCGC 2 cut(s) 181, 278
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 4 cut(s) 30, 127, 357, 597
TaaI ACNGT 2 cut(s) 269, 462
TaqI TCGA 2 cut(s) 74, 593
TasI AATT 5 cut(s) 25, 244, 260, 486, 651
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 4 cut(s) 293, 336, 420, 435
Tru9I TTAA 4 cut(s) 293, 336, 420, 435
TscAI CASTG 2 cut(s) 232, 292
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 4 cut(s) 439, 509, 521, 620
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 5 cut(s) 17, 272, 566, 579, 615
TspRI CASTG 2 cut(s) 232, 292
VneI GTGCAC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.