Rorug05G0517300
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009648
Physical Location & Seq
Forward (+)
70165828 .. 70166599
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0517300.1

Sequence Viewer

Length: 600 bp
ATGGATGAGATGAAGTTGTTAATTATCATATTATGGAGCAATTGGAAAGAAAGGAATCTGGTCGTGCATGAGAGAGAGGGTAGTGGTGGGAGGAATAATGCGGTTATTGATCCAGAGAATGCTCGGTGGACTCCACCATCTCCAGGGGGATTGAAACTCAATTGTGATGCATCTGTTATTGACAATGGGTCCCAAGTTGGGGTTGGTGCGTTAATTAGAGGAGGTGATGGGGAGTTGGTGCTTGCGGTGGGGGAACGGTTGCATGGGCGTCTTCAGCCATGTGCAGCTGAGTTGCAGGCATTAATAATGGGTCTGGAACTCTGGATCGAAGTAATGTTAGAGAATGGATGGAGGCCGGAAAAGGTTGAAACTGATTGCCTGGAGGCTGTTCAATTGGTGAATGGAAGTGATGATTGTTTGGCTCCGGAGGGAGTTTTGGTTGACAAGGTCAAGGTGCTATTGGCTTCTGTTGGTACTCAAGGGGTTGGGCCCTCTTGGCTCATGGATGTCGTCGTTGATGATAGACCTGTAACTCATGGTAGTAGTAGGGAAGTGAGTGGGGACTCTTTGTCCACCACCGGTCATTCTCATATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

199

Amino Acids

21.37

Weight (kDa)

4.7

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 54 - 154 2.7e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 2 cut(s) 101, 245
AclWI GGATC 2 cut(s) 104, 332
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 3 cut(s) 143, 198, 199
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 3 cut(s) 154, 368, 392
AhdI GACNNNNNGTC 2 cut(s) 187, 568
AjnI CCWGG 2 cut(s) 142, 378
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AlwI GGATC 2 cut(s) 104, 332
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 353, 488
ApaI GGGCCC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 284
AseI ATTAAT 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 578
AspS9I GGNCC 3 cut(s) 189, 488, 489
AsuHPI GGTGA 2 cut(s) 236, 409
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 296
BccI CCATC 3 cut(s) 145, 221, 342
BciT130I CCWGG 2 cut(s) 144, 380
BglI GCCNNNNNGGC 1 cut(s) 496
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 144, 380
Bme18I GGWCC 1 cut(s) 189
BmeRI GACNNNNNGTC 2 cut(s) 187, 568
BmgT120I GGNCC 3 cut(s) 189, 488, 489
BmiI GGNNCC 4 cut(s) 190, 191, 423, 490
BmrFI CCNGG 2 cut(s) 144, 380
BmsI GCATC 2 cut(s) 157, 179
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 2 cut(s) 126, 401
BpuEI CTTGAG 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 424, 578
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 198, 199
Bse118I RCCGGY 1 cut(s) 578
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 2 cut(s) 144, 380
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 3 cut(s) 10, 353, 511
BseLI CCNNNNNNNGG 3 cut(s) 143, 198, 199
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 2 cut(s) 355, 490
BshTI ACCGGT 1 cut(s) 578
BsiSI CCGG 3 cut(s) 356, 425, 579
BslFI GGGAC 2 cut(s) 175, 575
BslI CCNNNNNNNGG 3 cut(s) 143, 198, 199
BsmFI GGGAC 2 cut(s) 175, 575
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 355, 490
Bsp120I GGGCCC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 492
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 109, 324
BspACI CCGC 2 cut(s) 101, 245
BspANI GGCC 2 cut(s) 355, 490
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 190, 191, 423, 490
BspPI GGATC 2 cut(s) 104, 332
BsrFI RCCGGY 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 2 cut(s) 109, 324
BssNI GRCGYC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 144, 380
Bst4CI ACNGT 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 243, 297
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 10, 353, 511
BstKTI GATC 2 cut(s) 112, 327
BstMBI GATC 2 cut(s) 109, 324
BstMWI GCNNNNNNNGC 2 cut(s) 274, 496
BstNI CCWGG 2 cut(s) 144, 380
BstSCI CCNGG 2 cut(s) 142, 378
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 355, 490
BtsCI GGATG 3 cut(s) 10, 353, 511
Cac8I GCNNGC 2 cut(s) 243, 297
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 3 cut(s) 189, 488, 489
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 474
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 5 cut(s) 68, 263, 279, 502, 536
CviJI RGCY 8 cut(s) 277, 287, 355, 386, 422, 464, 490, 499
CviKI_1 RGCY 8 cut(s) 277, 287, 355, 386, 422, 464, 490, 499
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 111, 326
DpnII GATC 2 cut(s) 109, 324
DriI GACNNNNNGTC 2 cut(s) 187, 568
Eam1105I GACNNNNNGTC 2 cut(s) 187, 568
Eco24I GRGCYC 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 257
EcoO109I RGGNCCY 2 cut(s) 189, 489
EcoRII CCWGG 2 cut(s) 142, 378
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 492
FaeI CATG 5 cut(s) 71, 266, 282, 505, 539
FaiI YATR 8 cut(s) 29, 34, 69, 264, 280, 503, 537, 591
FaqI GGGAC 2 cut(s) 175, 575
FatI CATG 5 cut(s) 67, 262, 278, 501, 535
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 3 cut(s) 17, 360, 518
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 126, 401
HaeIII GGCC 2 cut(s) 355, 490
HapII CCGG 3 cut(s) 356, 425, 579
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 5 cut(s) 71, 266, 282, 505, 539
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 3 cut(s) 55, 130, 563
HpaII CCGG 3 cut(s) 356, 425, 579
HphI GGTGA 2 cut(s) 236, 409
Hpy166II GTNNAC 3 cut(s) 129, 442, 573
Hpy188III TCNNGA 4 cut(s) 113, 314, 322, 425
Hpy8I GTNNAC 3 cut(s) 129, 442, 573
Hpy99I CGWCG 1 cut(s) 515
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 5 cut(s) 67, 170, 262, 284, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 496
HpyF3I CTNAG 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 5 cut(s) 71, 266, 282, 505, 539
KflI GGGWCCC 1 cut(s) 189
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 109, 324
LmnI GCTCC 2 cut(s) 36, 427
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 157, 179
MaeIII GTNAC 1 cut(s) 529
MalI GATC 2 cut(s) 111, 326
MboI GATC 2 cut(s) 109, 324
MboII GAAGA 1 cut(s) 263
MfeI CAATTG 3 cut(s) 40, 160, 392
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 5 cut(s) 21, 40, 160, 213, 392
MlyI GAGTC 2 cut(s) 124, 557
MnlI CCTC 8 cut(s) 70, 84, 212, 215, 345, 376, 421, 502
Mph1103I ATGCAT 1 cut(s) 172
MroI TCCGGA 1 cut(s) 424
MseI TTAA 3 cut(s) 20, 212, 302
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 3 cut(s) 356, 425, 579
MspR9I CCNGG 2 cut(s) 144, 380
MunI CAATTG 3 cut(s) 40, 160, 392
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 144, 380
MwoI GCNNNNNNNGC 2 cut(s) 274, 496
NdeII GATC 2 cut(s) 109, 324
NlaIII CATG 5 cut(s) 71, 266, 282, 505, 539
NlaIV GGNNCC 4 cut(s) 190, 191, 423, 490
NsiI ATGCAT 1 cut(s) 172
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 55
PflFI GACNNNGTC 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 2 cut(s) 124, 557
PpsI GAGTC 2 cut(s) 124, 557
PpuMI RGGWCCY 1 cut(s) 189
PshBI ATTAAT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 142, 378
PspGI CCWGG 2 cut(s) 142, 378
PspN4I GGNNCC 4 cut(s) 190, 191, 423, 490
PspOMI GGGCCC 1 cut(s) 488
PspPI GGNCC 3 cut(s) 189, 488, 489
PspPPI RGGWCCY 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SaqAI TTAA 3 cut(s) 20, 212, 302
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 109, 324
Sau96I GGNCC 3 cut(s) 189, 488, 489
SchI GAGTC 2 cut(s) 124, 557
ScrFI CCNGG 2 cut(s) 144, 380
SduI GDGCHC 1 cut(s) 492
SetI ASST 6 cut(s) 226, 289, 366, 450, 456, 529
SfaNI GCATC 2 cut(s) 157, 179
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 5 cut(s) 21, 40, 160, 213, 392
SsiI CCGC 2 cut(s) 101, 245
StyD4I CCNGG 2 cut(s) 142, 378
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 327
TasI AATT 5 cut(s) 21, 40, 160, 213, 392
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 20, 212, 302
Tru9I TTAA 3 cut(s) 20, 212, 302
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 189
VspI ATTAAT 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.