FvH4_2g02270

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009648
Physical Location & Seq
Forward (+)
1874163 .. 1874693
531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02270.t1

Sequence Viewer

Length: 531 bp
ATGGCGGCTCGGGTCAATAGAGGTCGTCAAAAGATACCTTTGCAAAAAATAGAGAATGAGACATACCGGTCAGTTACTTTCTCCAAGAGAAAGTCTAGCATTCTTAAAAAATCAAGTGAGCTTTGCACACTCACAAGTGTAGAGATGGCAGTAATCGTAAGGTCTGCTGGGAATAAAACATTCTCTTTTGGCCACCCTCATGTGCAAGCCATTATAGACCGTTTTCTGTTGGTGAACCCTGAACCCCTCGCCAACCCATACATCGCCAATCAGTTTTTGGGAAATTTCCACACCATAATTGAGGAACTCAACACGGAGTACACTGTTGTAGATGAGGAGTTCATAAATTGTAAACAACAGAGGGATGTGCTTACAAGGACAGATAGGGTTTGCGAAGCAGAGCAGCGATACAAGAGGTTATTAGACTACATGGACCGTGAAGAGATAAACTCGTTTGAAAGAGACTTGGTTAAGCTGCATGGTATTGTAGCTCAACGGTCCGAAGGTTGCAACAAAGGCAAGATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

177

Amino Acids

20.32

Weight (kDa)

8.9

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 3.1e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 283
AfaI GTAC 1 cut(s) 320
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 1 cut(s) 458
AluBI AGCT 4 cut(s) 121, 475, 491, 528
AluI AGCT 4 cut(s) 121, 475, 491, 528
Alw26I GTCTC 2 cut(s) 53, 456
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 403, 475
ApoI RAATTY 1 cut(s) 283
AsiGI ACCGGT 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 433, 498
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 2 cut(s) 433, 498
BalI TGGCCA 1 cut(s) 192
BbvI GCAGC 2 cut(s) 415, 462
BccI CCATC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 53, 456
BfaI CTAG 1 cut(s) 96
BisI GCNGC 3 cut(s) 6, 404, 476
BlsI GCNGC 3 cut(s) 7, 405, 477
Bme18I GGWCC 2 cut(s) 433, 498
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 433, 498
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BsaWI WCCGGW 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 66
BseGI GGATG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 415, 462
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 53, 456
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 1 cut(s) 522
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssMI GATC 1 cut(s) 522
Bst4CI ACNGT 4 cut(s) 221, 325, 437, 498
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 207
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 2 cut(s) 53, 456
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 2 cut(s) 516, 525
BstV1I GCAGC 2 cut(s) 415, 462
BsuRI GGCC 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 433, 498
CpoI CGGWCCG 1 cut(s) 498
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 66
CspI CGGWCCG 1 cut(s) 498
CviAII CATG 3 cut(s) 200, 430, 479
CviJI RGCY 7 cut(s) 8, 121, 192, 209, 475, 491, 528
CviKI_1 RGCY 7 cut(s) 8, 121, 192, 209, 475, 491, 528
CviQI GTAC 1 cut(s) 319
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 433, 498
Eco88I CYCGRG 1 cut(s) 9
FaeI CATG 3 cut(s) 203, 433, 482
FaiI YATR 8 cut(s) 64, 201, 215, 259, 296, 344, 431, 480
FatI CATG 3 cut(s) 199, 429, 478
Fnu4HI GCNGC 3 cut(s) 6, 404, 476
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 3 cut(s) 6, 404, 476
FspBI CTAG 1 cut(s) 96
GluI GCNGC 3 cut(s) 6, 404, 476
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 67
Hin1II CATG 3 cut(s) 203, 433, 482
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 3 cut(s) 235, 321, 353
Hpy188I TCNGA 1 cut(s) 502
Hpy8I GTNNAC 3 cut(s) 235, 321, 353
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 4 cut(s) 221, 325, 437, 498
HpyCH4V TGCA 5 cut(s) 43, 126, 205, 478, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 525
Hsp92II CATG 3 cut(s) 203, 433, 482
Kzo9I GATC 1 cut(s) 522
LpnPI CCDG 3 cut(s) 80, 153, 252
Lsp1109I GCAGC 2 cut(s) 415, 462
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 283, 297, 346
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 7 cut(s) 14, 207, 257, 295, 328, 354, 408
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 105, 471
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 516, 525
NdeII GATC 1 cut(s) 522
NlaIII CATG 3 cut(s) 203, 433, 482
PctI GAATGC 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 3 cut(s) 7, 405, 477
PspFI CCCAGC 1 cut(s) 167
PspPI GGNCC 2 cut(s) 433, 498
PvuII CAGCTG 1 cut(s) 528
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 198
Rsr2I CGGWCCG 1 cut(s) 498
RsrII CGGWCCG 1 cut(s) 498
SaqAI TTAA 2 cut(s) 105, 471
SatI GCNGC 3 cut(s) 6, 404, 476
Sau3AI GATC 1 cut(s) 522
Sau96I GGNCC 2 cut(s) 433, 498
SetI ASST 9 cut(s) 25, 40, 123, 164, 419, 477, 493, 508, 530
SinI GGWCC 2 cut(s) 433, 498
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 283, 297, 346
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 4 cut(s) 221, 325, 437, 498
TasI AATT 3 cut(s) 283, 297, 346
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 105, 471
Tru9I TTAA 2 cut(s) 105, 471
TscAI CASTG 1 cut(s) 328
TseI GCWGC 2 cut(s) 403, 475
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 433, 498
XapI RAATTY 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.