Rroxscaffold_7G00215090

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009648
Physical Location & Seq
Reverse (-)
65714421 .. 65715925
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215090.1

Sequence Viewer

Length: 783 bp
ATGGCCGGTAGGGTCAATAGAGGTCGCCAGAAAATTAAAATGAAGAAAATAGAAAGCGAGAGTAATTGCCAGGTTACTTTCTCTAAGAGAAAGTCTTGCATTTTCAAAAAGTCGAGTGAGCTAAGCACGCTCACAGGTGCAGAGATCGCCATAATCATAAGTTCTCCCGGAAATAAGACATTCTCATTCGGGCACCCTTCTGTGCAGGCCATCGTTGACCGCTATCTGTCTCCGGCCCCTGAACCCCCAGCTAGCACAGACATCACTGAGAAGCTGTTGGAAAATTTTCGCATCATGAAATTGAACAGTCTCAACGCGGAGTGCACTGCCTTAAATGAGGAGCTGTTGAACTGTAGACAGCAGGGAGAGGTGCTTAAAAGAATTGCGAGGGCTGGCCAGGCTGACGAGTGGTATGGGAGGTCCTTAGACAGCATGGACGAGGAGCAACGAGACTCATTTAAGAAAGACTTGATTAAGCTGCATGGTATTGTGGCTCAACGGTCTAAAGAATTGCATCAAAGGCAAATTGAGCTGATGCAACAGCACTCTGCAATGGGGGCTGCTGGGGGATTTAGGGATTTTATGTCACCGAATGTCGCCCCTATTAGGTCTTTTCATGGGGGAGTTCATCGAGCCAGGATGACTTGTCTAAGAAAGAGGAGATTGAAACTTACCGAAGTCAAGCTCTGTGTAGGTAGCGAAATTCTAAGATTATCGGGTAGTGGAATTCAGGGGCATCTCTTGAAAGTTATTGCATGCAGATTTAACCGGCCTTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

260

Amino Acids

29.17

Weight (kDa)

9.89

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 2.2e-19 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 220, 317
AcoI YGGCCR 2 cut(s) 3, 394
AcsI RAATTY 3 cut(s) 283, 702, 726
AfiI CCNNNNNNNGG 1 cut(s) 606
AgsI TTSAA 5 cut(s) 106, 304, 349, 667, 745
AjnI CCWGG 3 cut(s) 69, 396, 635
AluBI AGCT 7 cut(s) 121, 251, 274, 343, 478, 532, 685
AluI AGCT 7 cut(s) 121, 251, 274, 343, 478, 532, 685
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 234, 314, 444
Alw44I GTGCAC 1 cut(s) 322
AoxI GGCC 5 cut(s) 3, 207, 234, 394, 770
ApaLI GTGCAC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 478, 560
ApoI RAATTY 3 cut(s) 283, 702, 726
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 235, 420
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 579
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 2 cut(s) 195, 326
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 465, 547
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 71, 398, 637
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 234, 314, 444
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 479, 561
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 2 cut(s) 480, 562
Bme1390I CCNGG 4 cut(s) 71, 168, 398, 637
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 235, 420
BmiI GGNNCC 2 cut(s) 194, 237
BmrFI CCNGG 4 cut(s) 71, 168, 398, 637
BmsI GCATC 4 cut(s) 300, 523, 525, 745
BmtI GCTAGC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 2 cut(s) 5, 768
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 71, 398, 637
BseGI GGATG 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 353, 455, 673
BseSI GKGCMC 2 cut(s) 195, 326
BseXI GCAGC 2 cut(s) 465, 547
BseYI CCCAGC 2 cut(s) 247, 563
BsgI GTGCAG 2 cut(s) 159, 224
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 5 cut(s) 5, 209, 236, 396, 772
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 4 cut(s) 6, 168, 233, 769
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 3 cut(s) 234, 314, 444
BsnI GGCC 5 cut(s) 5, 209, 236, 396, 772
Bsp1286I GDGCHC 2 cut(s) 195, 326
Bsp143I GATC 1 cut(s) 144
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 2 cut(s) 220, 317
BspANI GGCC 5 cut(s) 5, 209, 236, 396, 772
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 194, 237
BspOI GCTAGC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 2 cut(s) 5, 768
BssAI RCCGGY 2 cut(s) 5, 768
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 3 cut(s) 71, 398, 637
Bst4CI ACNGT 3 cut(s) 308, 353, 501
BstC8I GCNNGC 5 cut(s) 128, 207, 253, 394, 757
BstDEI CTNAG 6 cut(s) 84, 122, 267, 424, 650, 707
BstF5I GGATG 1 cut(s) 645
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 3 cut(s) 234, 314, 444
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 6 cut(s) 127, 146, 398, 520, 529, 557
BstNI CCWGG 3 cut(s) 71, 398, 637
BstNSI RCATGY 1 cut(s) 759
BstSCI CCNGG 4 cut(s) 69, 166, 396, 635
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 195, 326
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 465, 547
BsuRI GGCC 5 cut(s) 5, 209, 236, 396, 772
BtsCI GGATG 1 cut(s) 645
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 264, 324
Cac8I GCNNGC 5 cut(s) 128, 207, 253, 394, 757
CciI TCATGA 1 cut(s) 294
Cfr10I RCCGGY 2 cut(s) 5, 768
Cfr13I GGNCC 2 cut(s) 235, 420
CviAII CATG 5 cut(s) 295, 433, 482, 617, 756
DdeI CTNAG 6 cut(s) 84, 122, 267, 424, 650, 707
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 2 cut(s) 3, 394
Eco47I GGWCC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 726
EcoRII CCWGG 3 cut(s) 69, 396, 635
FaeI CATG 5 cut(s) 298, 436, 485, 620, 759
FaiI YATR 9 cut(s) 152, 158, 296, 414, 434, 483, 584, 618, 757
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 5 cut(s) 294, 432, 481, 616, 755
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 479, 561
FokI GGATG 1 cut(s) 652
Fsp4HI GCNGC 2 cut(s) 479, 561
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 479, 561
GsaI CCCAGC 2 cut(s) 251, 567
HaeIII GGCC 5 cut(s) 5, 209, 236, 396, 772
HapII CCGG 4 cut(s) 6, 168, 233, 769
Hin1II CATG 5 cut(s) 298, 436, 485, 620, 759
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 452
HpaII CCGG 4 cut(s) 6, 168, 233, 769
HphI GGTGA 1 cut(s) 579
Hpy166II GTNNAC 3 cut(s) 217, 324, 356
Hpy188III TCNNGA 2 cut(s) 295, 742
Hpy8I GTNNAC 3 cut(s) 217, 324, 356
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 308, 353, 501
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 146, 398, 520, 529, 557
HpyF3I CTNAG 6 cut(s) 84, 122, 267, 424, 650, 707
Hsp92II CATG 5 cut(s) 298, 436, 485, 620, 759
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 340, 442
Lsp1109I GCAGC 2 cut(s) 465, 547
LweI GCATC 4 cut(s) 300, 523, 525, 745
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 73, 585
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 195, 326
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 9 cut(s) 33, 64, 283, 299, 381, 509, 525, 702, 726
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 7 cut(s) 14, 331, 361, 381, 411, 433, 651
Mox20I TGGCCA 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 396
MseI TTAA 6 cut(s) 36, 332, 375, 459, 474, 765
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 4 cut(s) 6, 168, 233, 769
MspR9I CCNGG 4 cut(s) 71, 168, 398, 637
MvaI CCWGG 3 cut(s) 71, 398, 637
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 6 cut(s) 127, 146, 398, 520, 529, 557
NciI CCSGG 1 cut(s) 168
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 298, 436, 485, 620, 759
NlaIV GGNNCC 2 cut(s) 194, 237
NmuCI GTSAC 1 cut(s) 585
NspI RCATGY 1 cut(s) 759
PaeI GCATGC 1 cut(s) 759
PagI TCATGA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 2 cut(s) 480, 562
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 69, 396, 635
PspFI CCCAGC 2 cut(s) 247, 563
PspGI CCWGG 3 cut(s) 69, 396, 635
PspN4I GGNNCC 2 cut(s) 194, 237
PspPI GGNCC 2 cut(s) 235, 420
PspPPI RGGWCCY 1 cut(s) 420
SaqAI TTAA 6 cut(s) 36, 332, 375, 459, 474, 765
SatI GCNGC 2 cut(s) 479, 561
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 235, 420
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 4 cut(s) 71, 168, 398, 637
SduI GDGCHC 2 cut(s) 195, 326
SfaNI GCATC 4 cut(s) 300, 523, 525, 745
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 420
SphI GCATGC 1 cut(s) 759
Sse9I AATT 9 cut(s) 33, 64, 283, 299, 381, 509, 525, 702, 726
SsiI CCGC 2 cut(s) 220, 317
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 4 cut(s) 69, 166, 396, 635
TaaI ACNGT 3 cut(s) 308, 353, 501
TaqI TCGA 2 cut(s) 113, 631
TasI AATT 9 cut(s) 33, 64, 283, 299, 381, 509, 525, 702, 726
Tru1I TTAA 6 cut(s) 36, 332, 375, 459, 474, 765
Tru9I TTAA 6 cut(s) 36, 332, 375, 459, 474, 765
TscAI CASTG 2 cut(s) 271, 331
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 2 cut(s) 478, 560
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 4 cut(s) 56, 311, 605, 617
TspRI CASTG 2 cut(s) 271, 331
VneI GTGCAC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 3 cut(s) 283, 702, 726
XceI RCATGY 1 cut(s) 759
XmiI GTMKAC 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.