Rorug05G0517200
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009648
Physical Location & Seq
Forward (+)
70163865 .. 70165568
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0517200.1

Sequence Viewer

Length: 1290 bp
ATGGATTCCGCCACCATAAGACAACCAAACGGCGTCTGCCACATAGTGGCCATGCCCCATCCCGGCCGGGGTCACATAAACCCTATGATGAACCTCTGCAACTTGCTAGTTTCCCAAAAGAGTGATATTCTAATAACCTTCGTCCTCACAGAAGAGTGGCTCGGCTTAATCGGGTCTGAAGCCAAGCCGGACAACATTGGCTTCGCCACAATCCCTAATGTGATCCCATCGGAGAAGGATCGTGCAGCCGACATGGTTGCATTCTTTGAAGCCATCGCGACCAAAATGGAAGCTCCGTTTGAGCAGCTCCTGGATGGTCTCGAGCCACCACCTAGTGCCATTGTGGCTGACACTTTCCTGCCTTGGGCAGTCGCCGTCGGCAACCGGAGAAATATTTCTGCGGTGTCCTTTTGGCCAATGTGCGAGAATGGCAATGAACGTGTTGATTACATCCCAGGAGTTTCTTCCATACGATTAGCGGACACTAGTAGTTTCATTGATGGAAGCCAATCAAAAATTCTAGACAATATCCTCAAGGATTTTTCTTGGGTGCCCAAAGCACAATATCTCTTTGTCACCTCCATCTATGAGCTTGAAACCCAAGTAATTGATGTGATAAGATCAGAACTCTCACTTCCAGTTTACACAATAGGCCCATTAATACCTTCCTTCAAAGCTATCGGTCCTACTGGTACTAACCATCTACAATGGTTGGATTCTCAACCTTGTAGCTCTGTTTTATATATCTCTATGGGAAGCTTTCTTTCAGTTTCTGGTGCCCAAATGGATGAGATAGCAATTGGTTTGCGCAAGAGTGGTGTTCGATTCTTTTGGGTGGCTCGCGGTGACACACATAGATTACAAGAGGTTTGTGGTGATATGGGGTTAGTTGTTCCCTGGTGTGAGCAATTAAGAGTGTTGTGTCATTCTTCTGTTGGTGGGTATTGGTCACATTGTGGATGGAACTCAATTAGAGAAGGTGTTTTTGCAGGTGTTCCTTTTCTTACCTTTCCCATAGTTTTCGACCAAGGCATGAATAGTAAGGTGGTTGTGGAGGATTGGAAAATTGGGTGGAGGGTGAAGAGTACTGAGGCGAAAATCAACCATTTAGTGACAAGTGAGGAAATTGCAGTGTTAGTGAAAAAATTTATGGATTTGGAGGATGATGAAGGGAAAGAAATGAGAAGGAGAGCAAGTGAACTCCAGCAGATATGGAAAGGTGCCATTGCAGAAGGCGGTTCAACTAAAACTAACATCAATGCCTTCATTAGAGACATTTCACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

429

Amino Acids

47.54

Weight (kDa)

5.23

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 235 - 355 1.3e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 980
Acc16I TGCGCA 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 980
AccB1I GGYRCC 3 cut(s) 550, 776, 1220
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 2 cut(s) 278, 843
AciI CCGC 5 cut(s) 9, 401, 479, 843, 1236
AclWI GGATC 2 cut(s) 217, 246
AcoI YGGCCR 3 cut(s) 48, 64, 413
AcsI RAATTY 2 cut(s) 516, 1145
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 3 cut(s) 46, 335, 956
AfaI GTAC 2 cut(s) 694, 1087
AfiI CCNNNNNNNGG 4 cut(s) 46, 62, 68, 364
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 4 cut(s) 269, 596, 673, 1242
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 3 cut(s) 309, 454, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 6 cut(s) 293, 307, 592, 677, 732, 759
AluI AGCT 6 cut(s) 293, 307, 592, 677, 732, 759
Alw26I GTCTC 2 cut(s) 323, 1266
AlwI GGATC 2 cut(s) 217, 246
AlwNI CAGNNNCTG 2 cut(s) 310, 773
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 4 cut(s) 48, 64, 413, 652
ApeKI GCWGC 2 cut(s) 245, 304
ApoI RAATTY 2 cut(s) 516, 1145
AseI ATTAAT 1 cut(s) 659
Asp700I GAANNNNTTC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 810
AspS9I GGNCC 2 cut(s) 653, 683
AsuC2I CCSGG 2 cut(s) 63, 68
AsuHPI GGTGA 4 cut(s) 568, 857, 887, 1090
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 683
BaeGI GKGCMC 2 cut(s) 555, 781
BalI TGGCCA 2 cut(s) 50, 415
BanI GGYRCC 3 cut(s) 550, 776, 1220
BbvI GCAGC 2 cut(s) 257, 316
BccI CCATC 8 cut(s) 66, 235, 281, 308, 494, 590, 708, 954
BceAI ACGGC 2 cut(s) 46, 359
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 311, 456, 898
BcnI CCSGG 2 cut(s) 63, 68
BcoDI GTCTC 2 cut(s) 323, 1266
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 107, 333, 486, 521
BfuAI ACCTGC 1 cut(s) 980
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 2 cut(s) 246, 305
BlsI GCNGC 2 cut(s) 247, 306
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 5 cut(s) 63, 68, 311, 456, 898
Bme18I GGWCC 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 653, 683
BmiI GGNNCC 3 cut(s) 552, 778, 1222
BmrFI CCNGG 5 cut(s) 63, 68, 311, 456, 898
BpmI CTGGAG 1 cut(s) 1187
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 2 cut(s) 63, 68
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 5 cut(s) 67, 362, 454, 896, 1027
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 1180, 1210
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 62, 68, 364
Bse1I ACTGG 2 cut(s) 638, 694
Bse3DI GCAATG 2 cut(s) 439, 1224
BseBI CCWGG 3 cut(s) 311, 456, 898
BseDI CCNNGG 5 cut(s) 67, 362, 454, 896, 1027
BseGI GGATG 6 cut(s) 58, 319, 450, 793, 965, 1168
BseLI CCNNNNNNNGG 4 cut(s) 46, 62, 68, 364
BseMI GCAATG 2 cut(s) 439, 1224
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 638, 694
BseSI GKGCMC 2 cut(s) 555, 781
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 257, 316
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 278, 843
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 4 cut(s) 50, 66, 415, 654
BshNI GGYRCC 3 cut(s) 550, 776, 1220
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 4 cut(s) 63, 67, 188, 385
BslI CCNNNNNNNGG 4 cut(s) 46, 62, 68, 364
BsmAI GTCTC 2 cut(s) 323, 1266
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 4 cut(s) 50, 66, 415, 654
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 555, 781
Bsp143I GATC 3 cut(s) 222, 238, 620
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 5 cut(s) 9, 401, 479, 843, 1236
BspANI GGCC 4 cut(s) 50, 66, 415, 654
BspCNI CTCAG 1 cut(s) 1081
BspFNI CGCG 2 cut(s) 278, 843
BspLI GGNNCC 3 cut(s) 552, 778, 1222
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 2 cut(s) 217, 246
BspT107I GGYRCC 3 cut(s) 550, 776, 1220
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 439, 1224
BsrI ACTGG 2 cut(s) 638, 694
BssECI CCNNGG 5 cut(s) 67, 362, 454, 896, 1027
BssMI GATC 3 cut(s) 222, 238, 620
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 362, 1027
Bst2UI CCWGG 3 cut(s) 311, 456, 898
Bst6I CTCTTC 2 cut(s) 147, 1076
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 841
BstDEI CTNAG 1 cut(s) 1089
BstF5I GGATG 6 cut(s) 58, 319, 450, 793, 965, 1168
BstFNI CGCG 2 cut(s) 278, 843
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 3 cut(s) 225, 241, 623
BstMAI GTCTC 2 cut(s) 323, 1266
BstMBI GATC 3 cut(s) 222, 238, 620
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 344, 429
BstNI CCWGG 3 cut(s) 311, 456, 898
BstSCI CCNGG 5 cut(s) 61, 66, 309, 454, 896
BstSLI GKGCMC 2 cut(s) 555, 781
BstUI CGCG 2 cut(s) 278, 843
BstV1I GCAGC 2 cut(s) 257, 316
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 4 cut(s) 50, 66, 415, 654
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 6 cut(s) 58, 319, 450, 793, 965, 1168
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 1 cut(s) 1137
BtuMI TCGCGA 1 cut(s) 278
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 1 cut(s) 841
CaiI CAGNNNCTG 2 cut(s) 310, 773
CfoI GCGC 1 cut(s) 810
Cfr13I GGNCC 2 cut(s) 653, 683
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 693, 1086
CviAII CATG 4 cut(s) 52, 253, 1033, 1283
CviQI GTAC 2 cut(s) 693, 1086
DdeI CTNAG 1 cut(s) 1089
DpnI GATC 3 cut(s) 224, 240, 622
DpnII GATC 3 cut(s) 222, 238, 620
DraIII CACNNNGTG 3 cut(s) 46, 335, 956
EaeI YGGCCR 3 cut(s) 48, 64, 413
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 147, 1076
EarI CTCTTC 2 cut(s) 147, 1076
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 362, 1027
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 683
Eco52I CGGCCG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 309, 454, 896
EcoT14I CCWWGG 2 cut(s) 362, 1027
ErhI CCWWGG 2 cut(s) 362, 1027
FaeI CATG 4 cut(s) 55, 256, 1036, 1286
FatI CATG 4 cut(s) 51, 252, 1032, 1282
Fnu4HI GCNGC 2 cut(s) 246, 305
FokI GGATG 6 cut(s) 45, 326, 437, 800, 972, 1175
Fsp4HI GCNGC 2 cut(s) 246, 305
FspBI CTAG 4 cut(s) 107, 333, 486, 521
FspI TGCGCA 1 cut(s) 809
GlaI GCGC 1 cut(s) 809
GluI GCNGC 2 cut(s) 246, 305
GsuI CTGGAG 1 cut(s) 1187
HaeIII GGCC 4 cut(s) 50, 66, 415, 654
HapII CCGG 4 cut(s) 63, 67, 188, 385
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 4 cut(s) 55, 256, 1036, 1286
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 3 cut(s) 5, 716, 825
HpaII CCGG 4 cut(s) 63, 67, 188, 385
HphI GGTGA 4 cut(s) 568, 857, 887, 1090
Hpy166II GTNNAC 2 cut(s) 643, 1199
Hpy188I TCNGA 3 cut(s) 178, 232, 625
Hpy188III TCNNGA 3 cut(s) 277, 320, 521
Hpy8I GTNNAC 2 cut(s) 643, 1199
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 9 cut(s) 148, 229, 675, 679, 971, 1163, 1179, 1226, 1273
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 6 cut(s) 99, 245, 260, 989, 1130, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 429
HpyF3I CTNAG 1 cut(s) 1089
HpySE526I ACGT 1 cut(s) 439
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 4 cut(s) 55, 256, 1036, 1286
HspAI GCGC 1 cut(s) 808
Kzo9I GATC 3 cut(s) 222, 238, 620
LmnI GCTCC 2 cut(s) 298, 312
Lsp1109I GCAGC 2 cut(s) 257, 316
MaeI CTAG 4 cut(s) 107, 333, 486, 521
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 5 cut(s) 71, 574, 845, 948, 1111
MalI GATC 3 cut(s) 224, 240, 622
MboI GATC 3 cut(s) 222, 238, 620
MboII GAAGA 4 cut(s) 164, 456, 921, 1093
MfeI CAATTG 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 555, 781
MlsI TGGCCA 2 cut(s) 50, 415
MluCI AATT 8 cut(s) 516, 606, 798, 908, 969, 1065, 1125, 1145
MluNI TGGCCA 2 cut(s) 50, 415
MmeI TCCRAC 1 cut(s) 693
Mox20I TGGCCA 2 cut(s) 50, 415
MroXI GAANNNNTTC 1 cut(s) 394
MscI TGGCCA 2 cut(s) 50, 415
MseI TTAA 4 cut(s) 167, 659, 911, 1288
Msp20I TGGCCA 2 cut(s) 50, 415
MspI CCGG 4 cut(s) 63, 67, 188, 385
MspR9I CCNGG 5 cut(s) 63, 68, 311, 456, 898
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 3 cut(s) 311, 456, 898
MvnI CGCG 2 cut(s) 278, 843
MwoI GCNNNNNNNGC 2 cut(s) 344, 429
NciI CCSGG 2 cut(s) 63, 68
NdeII GATC 3 cut(s) 222, 238, 620
NlaIII CATG 4 cut(s) 55, 256, 1036, 1286
NlaIV GGNNCC 3 cut(s) 552, 778, 1222
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 5 cut(s) 71, 574, 845, 948, 1111
NruI TCGCGA 1 cut(s) 278
NsbI TGCGCA 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 980
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 3 cut(s) 5, 716, 825
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 2 cut(s) 247, 306
PshBI ATTAAT 1 cut(s) 659
Psp6I CCWGG 3 cut(s) 309, 454, 896
PspGI CCWGG 3 cut(s) 309, 454, 896
PspN4I GGNNCC 3 cut(s) 552, 778, 1222
PspPI GGNCC 2 cut(s) 653, 683
PstNI CAGNNNCTG 2 cut(s) 310, 773
RruI TCGCGA 1 cut(s) 278
RsaI GTAC 2 cut(s) 694, 1087
RsaNI GTAC 2 cut(s) 693, 1086
SaqAI TTAA 4 cut(s) 167, 659, 911, 1288
SatI GCNGC 2 cut(s) 246, 305
Sau3AI GATC 3 cut(s) 222, 238, 620
Sau96I GGNCC 2 cut(s) 653, 683
ScaI AGTACT 1 cut(s) 1087
ScrFI CCNGG 5 cut(s) 63, 68, 311, 456, 898
SduI GDGCHC 2 cut(s) 555, 781
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 320, 533
SmoI CTYRAG 2 cut(s) 320, 533
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 8 cut(s) 516, 606, 798, 908, 969, 1065, 1125, 1145
SsiI CCGC 5 cut(s) 9, 401, 479, 843, 1236
SspI AATATT 1 cut(s) 394
SspMI CTAG 4 cut(s) 107, 333, 486, 521
StyD4I CCNGG 5 cut(s) 61, 66, 309, 454, 896
StyI CCWWGG 2 cut(s) 362, 1027
TaiI ACGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 321, 823, 1023
TaqII GACCGA 1 cut(s) 671
TasI AATT 8 cut(s) 516, 606, 798, 908, 969, 1065, 1125, 1145
TatI WGTACW 1 cut(s) 1085
TfiI GAWTC 3 cut(s) 5, 716, 825
Tru1I TTAA 4 cut(s) 167, 659, 911, 1288
Tru9I TTAA 4 cut(s) 167, 659, 911, 1288
TscAI CASTG 1 cut(s) 1137
TseFI GTSAC 5 cut(s) 71, 574, 845, 948, 1111
TseI GCWGC 2 cut(s) 245, 304
Tsp45I GTSAC 5 cut(s) 71, 574, 845, 948, 1111
TspDTI ATGAA 6 cut(s) 104, 450, 484, 1049, 1182, 1255
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 1137
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 683
VspI ATTAAT 1 cut(s) 659
XapI RAATTY 2 cut(s) 516, 1145
XbaI TCTAGA 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 4 cut(s) 107, 333, 486, 521
ZrmI AGTACT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.