Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009648

Physical Location & Seq

Genomic Coordinates Reverse (-)

33012564 .. 33012818

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG320800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCAGCTAAATGCTGCAATGGTGCAACAAGCTGAGCTAATGAAGAAAAACACTATGTTGATGCAGCAAAACCCTGCTATCGGGGCTATTAAGGGATTTAAGAACTTCGTTCAACCAAGTGCAGCCACTGCTTTGCTGTTTCATGGTGGAAATTCATCGAACCACAACACGATGAATCCCTATGATCCTATGCCTTCTCCTCCTCCTCCTGCCGGACCATGGAATCTGAATTTTGGAAGTCAGCGATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.19

Weight (kDa)

9.82

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02230 FvH4_2g02270
rosa_chinensis	RchiOBHm_Chr6g0245921
rosa_laevigata	RLG00000015290
rosa_multiflora	Rmu_sc0005570.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215090
rosa_rugosa	Rorug03G0236200 Rorug05G0516400 Rorug05G0517200 Rorug05G0517300
rosa_samantha	Rh3BG320800 Rh3BG320900 Rh6AG031500 Rh6AG031700 Rh6BG028000 Rh6BG028100 Rh6CG027800 Rh6CG027900 Rh6CG028100 Rh6DG026900 Rh6DG027100 Rh6DG027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	151, 229
AfiI	CCNNNNNNNGG	3 cut(s)	80, 212, 219
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	3 cut(s)	7, 32, 37
AluI	AGCT	3 cut(s)	7, 32, 37
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	128
ApeKI	GCWGC	4 cut(s)	4, 14, 64, 122
ApoI	RAATTY	2 cut(s)	151, 229
AspS9I	GGNCC	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	16, 76, 134
BisI	GCNGC	4 cut(s)	5, 15, 65, 123
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	4 cut(s)	6, 16, 66, 124
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 212, 219
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	80, 212, 219
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	3 cut(s)	189, 192, 195
BseXI	GCAGC	3 cut(s)	16, 76, 134
BsgI	GTGCAG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	80, 212, 219
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 128
BstV1I	GCAGC	3 cut(s)	16, 76, 134
BtgI	CCRYGG	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	2 cut(s)	143, 219
CviJI	RGCY	5 cut(s)	7, 32, 37, 86, 125
CviKI_1	RGCY	5 cut(s)	7, 32, 37, 86, 125
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	146, 222
FaiI	YATR	5 cut(s)	56, 144, 183, 191, 220
FatI	CATG	2 cut(s)	142, 218
Fnu4HI	GCNGC	4 cut(s)	5, 15, 65, 123
Fsp4HI	GCNGC	4 cut(s)	5, 15, 65, 123
GluI	GCNGC	4 cut(s)	5, 15, 65, 123
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	146, 222
HinfI	GANTC	2 cut(s)	175, 223
HpaII	CCGG	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	228, 254
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	4, 17, 25, 64, 122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 128
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	146, 222
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	3 cut(s)	87, 222, 226
Lsp1109I	GCAGC	3 cut(s)	16, 76, 134
LweI	GCATC	1 cut(s)	51
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	2 cut(s)	151, 229
MnlI	CCTC	3 cut(s)	210, 213, 216
MseI	TTAA	2 cut(s)	90, 99
MspI	CCGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	83, 128
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	146, 222
PfeI	GAWTC	2 cut(s)	175, 223
PkrI	GCNGC	4 cut(s)	6, 16, 66, 124
PspPI	GGNCC	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	90, 99
SatI	GCNGC	4 cut(s)	5, 15, 65, 123
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	215
SetI	ASST	3 cut(s)	9, 34, 39
SfaNI	GCATC	1 cut(s)	51
SgeI	CNNG	9 cut(s)	41, 86, 94, 129, 155, 181, 221, 225, 231
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	151, 229
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	151, 229
TfiI	GAWTC	2 cut(s)	175, 223
Tru1I	TTAA	2 cut(s)	90, 99
Tru9I	TTAA	2 cut(s)	90, 99
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	4 cut(s)	4, 14, 64, 122
TspDTI	ATGAA	4 cut(s)	56, 131, 144, 188
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	151, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.