Rh6DG027400
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009648
Physical Location & Seq
Forward (+)
2405101 .. 2405664
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG027400.1

Sequence Viewer

Length: 564 bp
ATGGAAGCTGTTATTGACCGCTATGAGAACATGAACGCTCCCTTGGCAAACAACGGCAACACTGAGCAGCTTATGGAGGCTGCACGTAGAAGACAAACAGACGATTTGATGGCGGAGTTGGATGCTATCAATGGGGATCAACATAAAGAGACAATGAAGAGAAAGGTGCTTAATAAAAAGGAGAAGGCTGGCCAGGCTCAGAATTGGTATGAGAGGTCCGTTGACTGCATAAACGATAAAGAACAATTAAACTTCTTCGAGAATGCGTTGAGGGAGCTAGGCGATATGGTGGCCCAACATTCTGAAATGCTGCGGCAAAAGCAGGTTGGACTAATGCAGCAAAACGCTGCAATGGTGCAGCAAGTCGAGCTGATGCAGCAAAACACTACTATAGGGGCTATTAGGGACTTCATGCAACCGAGGGCAGTTGCTGCTCGGCCGTTTTATAGAGGGAGTTCTTCGAGCAGCAACACGATGAATCCCTATGGTCCTATGCCTTCTTCTTCTCCTCCTTCTCCTACCGAACCCTGGAATCCAAATCTTGAAAGTCGCCAATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

187

Amino Acids

21.36

Weight (kDa)

5.5

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AciI CCGC 3 cut(s) 19, 113, 313
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 2 cut(s) 190, 437
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 1 cut(s) 545
AjnI CCWGG 2 cut(s) 192, 527
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 8, 70, 277, 370
AluI AGCT 4 cut(s) 8, 70, 277, 370
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 3 cut(s) 190, 291, 437
ApeKI GCWGC 9 cut(s) 67, 80, 310, 337, 347, 358, 376, 431, 465
AspS9I GGNCC 3 cut(s) 216, 292, 488
AvaII GGWCC 2 cut(s) 216, 488
BalI TGGCCA 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 9 cut(s) 67, 79, 297, 334, 349, 370, 388, 418, 477
BccI CCATC 1 cut(s) 103
BceAI ACGGC 2 cut(s) 70, 424
BciT130I CCWGG 2 cut(s) 194, 529
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 194, 529
Bme18I GGWCC 2 cut(s) 216, 488
BmgT120I GGNCC 3 cut(s) 216, 292, 488
BmrFI CCNGG 2 cut(s) 194, 529
BmsI GCATC 2 cut(s) 112, 363
BpiI GAAGAC 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 42, 419, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 194, 529
BseDI CCNNGG 3 cut(s) 42, 419, 527
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 54, 212
BseRI GAGGAG 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 9 cut(s) 67, 79, 297, 334, 349, 370, 388, 418, 477
BsgI GTGCAG 2 cut(s) 66, 377
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 3 cut(s) 192, 293, 439
BsiEI CGRYCG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 3 cut(s) 192, 293, 439
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 3 cut(s) 19, 113, 313
BspANI GGCC 3 cut(s) 192, 293, 439
BspCNI CTCAG 2 cut(s) 55, 211
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 42, 419, 527
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 194, 529
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 63, 198
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 136
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 6 cut(s) 44, 194, 319, 367, 376, 431
BstNI CCWGG 2 cut(s) 194, 529
BstSCI CCNGG 2 cut(s) 192, 527
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 9 cut(s) 67, 79, 297, 334, 349, 370, 388, 418, 477
BstV2I GAAGAC 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 437
BsuRI GGCC 3 cut(s) 192, 293, 439
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 3 cut(s) 216, 292, 488
CviAII CATG 2 cut(s) 31, 412
DdeI CTNAG 2 cut(s) 63, 198
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 190, 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 216, 488
Eco52I CGGCCG 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 192, 527
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 34, 415
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 30, 411
FokI GGATG 1 cut(s) 134
FspBI CTAG 1 cut(s) 278
HaeIII GGCC 3 cut(s) 192, 293, 439
Hin1II CATG 2 cut(s) 34, 415
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 478, 532
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 201, 304, 563
Hpy188III TCNNGA 2 cut(s) 259, 542
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 178, 507, 522
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 7 cut(s) 83, 228, 337, 350, 358, 376, 415
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 194, 319, 367, 376, 431
HpyF3I CTNAG 2 cut(s) 63, 198
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 34, 415
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 43, 274
LpnPI CCDG 6 cut(s) 174, 179, 206, 308, 514, 541
Lsp1109I GCAGC 9 cut(s) 67, 79, 297, 334, 349, 370, 388, 418, 477
LweI GCATC 2 cut(s) 112, 363
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 85
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 6 cut(s) 102, 169, 247, 450, 492, 495
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 202, 245, 554
MluNI TGGCCA 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 99, 307
MnlI CCTC 6 cut(s) 70, 207, 264, 414, 443, 519
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 171, 248
Msp20I TGGCCA 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 194, 529
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 2 cut(s) 194, 529
MwoI GCNNNNNNNGC 6 cut(s) 44, 194, 319, 367, 376, 431
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 34, 415
NmeAIII GCCGAG 1 cut(s) 415
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 478, 532
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 192, 527
PspGI CCWGG 2 cut(s) 192, 527
PspPI GGNCC 3 cut(s) 216, 292, 488
PstNI CAGNNNCTG 1 cut(s) 431
SaqAI TTAA 2 cut(s) 171, 248
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 3 cut(s) 216, 292, 488
ScrFI CCNGG 2 cut(s) 194, 529
SetI ASST 8 cut(s) 10, 72, 88, 168, 218, 279, 327, 372
SfaNI GCATC 2 cut(s) 112, 363
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 216, 488
Sse9I AATT 3 cut(s) 202, 245, 554
SsiI CCGC 3 cut(s) 19, 113, 313
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 192, 527
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 258, 366, 461
TasI AATT 3 cut(s) 202, 245, 554
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 478, 532
Tru1I TTAA 2 cut(s) 171, 248
Tru9I TTAA 2 cut(s) 171, 248
TscAI CASTG 1 cut(s) 67
TseI GCWGC 9 cut(s) 67, 80, 310, 337, 347, 358, 376, 431, 465
TspDTI ATGAA 4 cut(s) 47, 170, 400, 491
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 216, 488
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.