Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009648

Physical Location & Seq

Genomic Coordinates Forward (+)

3901974 .. 3902408

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGGATCTACACAGAGACACTGAAGAGAAAGGTGCTTAATAAAAAGGAGAAGGCTGGCCAGACTCAGAATTGGTATGAGAGGTCCGTTGATTGCATAAACGATAAAGAACAATTAAACTTCTTCAAGAATGTGTTGAGGGAGCTAGGCGATATGGTGGCCCAACATTTTGAAATGCTGCGGCAAAAGCAGGTTGGACTAATGCAGCAAAACGCTGCAATGGTGCAGCAAGCCGAGCTGATGCAGCAAAACACTACTATCGGGGCTATTAGGGACTTCATGCAACCGAGGGCAGCTGCTGCTCGGCCGTTTTATAGGGGGAATTCTTCAAGCAGCAATGTGATGAATCCCTATGGTCCTATGCCTTCTTCTTCTCCTCCTCCTCCTCCTGCCGAACCCTGGAATCCAAATCTTGAAAGTCGCCAATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

144

Amino Acids

16.61

Weight (kDa)

9.56

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02230 FvH4_2g02270
rosa_chinensis	RchiOBHm_Chr6g0245921
rosa_laevigata	RLG00000015290
rosa_multiflora	Rmu_sc0005570.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215090
rosa_rugosa	Rorug03G0236200 Rorug05G0516400 Rorug05G0517200 Rorug05G0517300
rosa_samantha	Rh3BG320800 Rh3BG320900 Rh6AG031500 Rh6AG031700 Rh6BG028000 Rh6BG028100 Rh6CG027800 Rh6CG027900 Rh6CG028100 Rh6DG026900 Rh6DG027100 Rh6DG027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	2 cut(s)	58, 305
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	127, 173, 330, 416
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	145, 238, 296
AluI	AGCT	3 cut(s)	145, 238, 296
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	58, 159, 305
ApeKI	GCWGC	9 cut(s)	178, 205, 215, 226, 244, 293, 296, 299, 333
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	84, 160, 356
AvaII	GGWCC	2 cut(s)	84, 356
BalI	TGGCCA	1 cut(s)	60
BbvI	GCAGC	9 cut(s)	165, 202, 217, 238, 256, 283, 286, 305, 345
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	84, 356
BmgT120I	GGNCC	3 cut(s)	84, 160, 356
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	287, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	225, 343
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	287, 398
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	2 cut(s)	225, 343
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	4 cut(s)	366, 369, 372, 375
BseX3I	CGGCCG	1 cut(s)	305
BseXI	GCAGC	9 cut(s)	165, 202, 217, 238, 256, 283, 286, 305, 345
BsgI	GTGCAG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	60, 161, 307
BsiEI	CGRYCG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	60, 161, 307
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	3 cut(s)	60, 161, 307
BspCNI	CTCAG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	225, 343
BssECI	CCNNGG	2 cut(s)	287, 398
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	58, 231
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	6
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 235, 244, 299
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	9 cut(s)	165, 202, 217, 238, 256, 283, 286, 305, 345
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZI	CGGCCG	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	60, 161, 307
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	58, 231
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	84, 160, 356
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	9 cut(s)	56, 60, 145, 161, 233, 238, 266, 296, 307
CviKI_1	RGCY	9 cut(s)	56, 60, 145, 161, 233, 238, 266, 296, 307
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EaeI	YGGCCR	2 cut(s)	58, 305
EagI	CGGCCG	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	84, 356
Eco52I	CGGCCG	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	398
FaeI	CATG	1 cut(s)	283
FaiI	YATR	7 cut(s)	78, 98, 155, 281, 315, 354, 362
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	1 cut(s)	279
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	60, 161, 307
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	3 cut(s)	64, 346, 403
Hpy188I	TCNGA	2 cut(s)	69, 434
Hpy188III	TCNNGA	2 cut(s)	127, 413
HpyAV	CCTTC	2 cut(s)	46, 375
HpyCH4V	TGCA	6 cut(s)	96, 205, 218, 226, 244, 283
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 235, 244, 299
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	42, 74, 176, 385, 402, 412
Lsp1109I	GCAGC	9 cut(s)	165, 202, 217, 238, 256, 283, 286, 305, 345
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	146
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	5 cut(s)	37, 115, 318, 360, 363
MflI	RGATCY	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	4 cut(s)	70, 113, 322, 425
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	75, 132, 282, 387, 390, 393, 396
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	39, 116
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	187, 235, 244, 299
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	283
NmeAIII	GCCGAG	2 cut(s)	259, 283
PfeI	GAWTC	2 cut(s)	346, 403
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspPI	GGNCC	3 cut(s)	84, 160, 356
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	39, 116
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	3 cut(s)	84, 160, 356
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	6 cut(s)	36, 86, 147, 195, 240, 298
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	2 cut(s)	84, 356
Sse9I	AATT	4 cut(s)	70, 113, 322, 425
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	398
TasI	AATT	4 cut(s)	70, 113, 322, 425
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	346, 403
Tru1I	TTAA	2 cut(s)	39, 116
Tru9I	TTAA	2 cut(s)	39, 116
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	9 cut(s)	178, 205, 215, 226, 244, 293, 296, 299, 333
TspDTI	ATGAA	2 cut(s)	268, 359
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	84, 356
XapI	RAATTY	1 cut(s)	322
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.