RLG00000015290

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009648
Physical Location & Seq
Reverse (-)
64080443 .. 64081159
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015290

Sequence Viewer

Length: 717 bp
ATGGCCGGTATGGTCAATATAGGTCGCCAGAAAATTAAAATGAAGAAAATAGAAAGCGAGAGTAATTGCCAAGTTACTTTCTCTAAGAGAAAGTCTTGCATTTTCAAAAAGTCTAGTGAGCTAAGCACGCTCACAGGTGCAGAGATCGCCATAATCATAAGTTCTCTTGGAAATAAGACATTCTCATTCGGCCACCCTTCTGTGCAGGCCATCGTTGACCGCTATCTGTCTCCGGCCCCTGAACCCCCAGCTAGTACAGACATCACTGAGAAGTTCTTGGAAAATTTTCGCATCATGAAATTGAATAGTCTCAACGCGGAGTGCACTACCTTAAATGAGGAGCTGTTGAACTGTAGACAGCAGGGAGAGGTGCTTAAAAGGATTGCGAGGGATGGCCAGGCTGATGAGTGGTATGGGAGGTCCTTAGACAGCATGGACAAGGAACAACGAGACTCATTTAAGAAAGACTTGATTAAGCTGCATGGTATTGTGGCTCAACGGTCTAAAGAATTGCATCAAAGGCAAATTGAGCTGATGCAACAGCACTCTGCAATAGGGGCTGCTGGGGGATTTAGGGATTTTATGTCACCGAGTGTCGCCCCTATTAGGTCTTTTCATGAGGGGAGTTCATCGAGCCAGGGTGCGATGCATCCTGATTCTGCTTCATCTTCCTCCTATTTCTCTAGGAAATTTGATCATAATCTTGGACATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

239

Amino Acids

26.5

Weight (kDa)

9.01

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 8.2e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 220, 317
AcoI YGGCCR 3 cut(s) 3, 190, 394
AcsI RAATTY 2 cut(s) 283, 689
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 606
AgsI TTSAA 3 cut(s) 106, 304, 349
AjnI CCWGG 2 cut(s) 396, 636
AluBI AGCT 5 cut(s) 121, 251, 343, 478, 532
AluI AGCT 5 cut(s) 121, 251, 343, 478, 532
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 234, 314, 444
Alw44I GTGCAC 1 cut(s) 322
AoxI GGCC 5 cut(s) 3, 190, 207, 234, 394
ApaLI GTGCAC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 478, 560
ApoI RAATTY 2 cut(s) 283, 689
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 235, 420
AsuHPI GGTGA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 465, 547
BccI CCATC 2 cut(s) 218, 386
BciT130I CCWGG 2 cut(s) 398, 638
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 234, 314, 444
BfaI CTAG 3 cut(s) 114, 252, 684
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 479, 561
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 2 cut(s) 480, 562
Bme1390I CCNGG 2 cut(s) 398, 638
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 235, 420
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 398, 638
BmsI GCATC 5 cut(s) 300, 523, 525, 636, 658
Bpu1102I GCTNAGC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 1 cut(s) 637
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 1 cut(s) 5
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 2 cut(s) 398, 638
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 2 cut(s) 397, 649
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 2 cut(s) 465, 547
BseYI CCCAGC 2 cut(s) 247, 563
BsgI GTGCAG 2 cut(s) 159, 224
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 5 cut(s) 5, 192, 209, 236, 396
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 2 cut(s) 6, 233
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 3 cut(s) 234, 314, 444
BsnI GGCC 5 cut(s) 5, 192, 209, 236, 396
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 2 cut(s) 144, 694
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 2 cut(s) 220, 317
BspANI GGCC 5 cut(s) 5, 192, 209, 236, 396
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 2 cut(s) 294, 616
BspLI GGNNCC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 2 cut(s) 144, 694
Bst2UI CCWGG 2 cut(s) 398, 638
Bst4CI ACNGT 2 cut(s) 353, 501
BstC8I GCNNGC 2 cut(s) 128, 207
BstDEI CTNAG 4 cut(s) 84, 122, 267, 424
BstF5I GGATG 2 cut(s) 397, 649
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 2 cut(s) 147, 697
BstMAI GTCTC 3 cut(s) 234, 314, 444
BstMBI GATC 2 cut(s) 144, 694
BstMWI GCNNNNNNNGC 5 cut(s) 127, 146, 520, 529, 557
BstNI CCWGG 2 cut(s) 398, 638
BstSCI CCNGG 2 cut(s) 396, 636
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 465, 547
BsuRI GGCC 5 cut(s) 5, 192, 209, 236, 396
BtgZI GCGATG 1 cut(s) 659
BtsCI GGATG 2 cut(s) 397, 649
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 128, 207
CciI TCATGA 2 cut(s) 294, 616
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 235, 420
Csp6I GTAC 1 cut(s) 255
CviAII CATG 5 cut(s) 295, 433, 482, 617, 710
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 4 cut(s) 84, 122, 267, 424
DpnI GATC 2 cut(s) 146, 696
DpnII GATC 2 cut(s) 144, 694
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 3 cut(s) 3, 190, 394
Eco47I GGWCC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 396, 636
EcoT22I ATGCAT 1 cut(s) 651
FaeI CATG 5 cut(s) 298, 436, 485, 620, 713
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 5 cut(s) 294, 432, 481, 616, 709
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 479, 561
FokI GGATG 2 cut(s) 404, 636
Fsp4HI GCNGC 2 cut(s) 479, 561
FspBI CTAG 3 cut(s) 114, 252, 684
GluI GCNGC 2 cut(s) 479, 561
GsaI CCCAGC 2 cut(s) 251, 567
HaeIII GGCC 5 cut(s) 5, 192, 209, 236, 396
HapII CCGG 2 cut(s) 6, 233
Hin1II CATG 5 cut(s) 298, 436, 485, 620, 713
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 452, 656
HpaII CCGG 2 cut(s) 6, 233
HphI GGTGA 1 cut(s) 579
Hpy166II GTNNAC 3 cut(s) 217, 324, 356
Hpy188III TCNNGA 3 cut(s) 295, 617, 653
Hpy8I GTNNAC 3 cut(s) 217, 324, 356
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 353, 501
HpyCH4V TGCA 9 cut(s) 99, 140, 205, 324, 481, 514, 538, 551, 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 146, 520, 529, 557
HpyF3I CTNAG 4 cut(s) 84, 122, 267, 424
Hsp92II CATG 5 cut(s) 298, 436, 485, 620, 713
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 144, 694
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 2 cut(s) 465, 547
LweI GCATC 5 cut(s) 300, 523, 525, 636, 658
MaeI CTAG 3 cut(s) 114, 252, 684
MaeIII GTNAC 2 cut(s) 73, 585
MalI GATC 2 cut(s) 146, 696
MboI GATC 2 cut(s) 144, 694
MboII GAAGA 2 cut(s) 55, 660
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 689
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 6 cut(s) 331, 361, 381, 411, 613, 682
Mox20I TGGCCA 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 396
MseI TTAA 5 cut(s) 36, 332, 375, 459, 474
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 2 cut(s) 6, 233
MspR9I CCNGG 2 cut(s) 398, 638
MvaI CCWGG 2 cut(s) 398, 638
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 127, 146, 520, 529, 557
NdeII GATC 2 cut(s) 144, 694
NlaIII CATG 5 cut(s) 298, 436, 485, 620, 713
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 651
PagI TCATGA 2 cut(s) 294, 616
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 656
PkrI GCNGC 2 cut(s) 480, 562
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 396, 636
PspFI CCCAGC 2 cut(s) 247, 563
PspGI CCWGG 2 cut(s) 396, 636
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 235, 420
PspPPI RGGWCCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 5 cut(s) 36, 332, 375, 459, 474
SatI GCNGC 2 cut(s) 479, 561
Sau3AI GATC 2 cut(s) 144, 694
Sau96I GGNCC 2 cut(s) 235, 420
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 398, 638
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 5 cut(s) 300, 523, 525, 636, 658
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 420
Sse9I AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 689
SsiI CCGC 2 cut(s) 220, 317
SspMI CTAG 3 cut(s) 114, 252, 684
StyD4I CCNGG 2 cut(s) 396, 636
TaaI ACNGT 2 cut(s) 353, 501
TaqI TCGA 1 cut(s) 632
TasI AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 689
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 5 cut(s) 36, 332, 375, 459, 474
Tru9I TTAA 5 cut(s) 36, 332, 375, 459, 474
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 2 cut(s) 478, 560
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 5 cut(s) 56, 311, 605, 618, 654
TspRI CASTG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 2 cut(s) 283, 689
XmiI GTMKAC 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 3 cut(s) 114, 252, 684
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.