Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005570.1

Orthogroup ID

OG0009648

Physical Location & Seq

Genomic Coordinates Reverse (-)

26468 .. 27163

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005570.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggccggtagggtcaatagaggtcgccagaaaattaaaatgaagaaaatagagagggagagtaattgccaggttactttctctaagagaaagtcttgcattttcaaaaagtcgagggagctaagcacgctcacaggtgcagagatcgccataatcataagttctcccggaaacaagacattctcattcggccacccttctgtgcaggccatcgttgaccgctatctgtctcctgccactgaacccccagctagcacagacatcactgagaagttcttggaaaattttcgcatcatgaaattgaacagtctcaacgcggagtgcactgccttaaatgaggagctgttgaactgtagacagcagggagaggtgcttaaaaggattgcgagggctggccaggctgacgagtggtatgggaggtccttagacagcatggacgaggaacaacgagactcatttaagaaagacttgattaagctgcatggtattgtggctcaacggtctaaagaatggcatcaaaggcaaattgagctgatgcaacagcacgctgcaatgggggctgctgggggatttagggattttatgtcaccgagtgtcgcccctatttggtcttttcatgaggggagttcatcgagccagggtgcaatgcatcccgatgctgcttcatcttcctcctctttttggcaggcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

231

Amino Acids

25.88

Weight (kDa)

9.21

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02230 FvH4_2g02270
rosa_chinensis	RchiOBHm_Chr6g0245921
rosa_laevigata	RLG00000015290
rosa_multiflora	Rmu_sc0005570.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215090
rosa_rugosa	Rorug03G0236200 Rorug05G0516400 Rorug05G0517200 Rorug05G0517300
rosa_samantha	Rh3BG320800 Rh3BG320900 Rh6AG031500 Rh6AG031700 Rh6BG028000 Rh6BG028100 Rh6CG027800 Rh6CG027900 Rh6CG028100 Rh6DG026900 Rh6DG027100 Rh6DG027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	317
AciI	CCGC	2 cut(s)	220, 317
AcoI	YGGCCR	3 cut(s)	3, 190, 394
AcsI	RAATTY	1 cut(s)	283
AdeI	CACNNNGTG	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	606, 681
AgsI	TTSAA	3 cut(s)	106, 304, 349
AjnI	CCWGG	3 cut(s)	69, 396, 636
AluBI	AGCT	5 cut(s)	121, 251, 343, 478, 532
AluI	AGCT	5 cut(s)	121, 251, 343, 478, 532
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	3 cut(s)	234, 314, 444
Alw44I	GTGCAC	1 cut(s)	322
AoxI	GGCC	4 cut(s)	3, 190, 207, 394
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	4 cut(s)	478, 548, 560, 659
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	579
AsuNHI	GCTAGC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	465, 535, 547, 646
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	3 cut(s)	71, 398, 638
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	234, 314, 444
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	4 cut(s)	479, 549, 561, 660
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	4 cut(s)	480, 550, 562, 661
Bme1390I	CCNGG	4 cut(s)	71, 168, 398, 638
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmrFI	CCNGG	4 cut(s)	71, 168, 398, 638
BmsI	GCATC	5 cut(s)	300, 523, 525, 646, 658
BmtI	GCTAGC	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 681
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	2 cut(s)	558, 651
BseBI	CCWGG	3 cut(s)	71, 398, 638
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	606, 681
BseMI	GCAATG	2 cut(s)	558, 651
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	353, 664
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	465, 535, 547, 646
BseYI	CCCAGC	2 cut(s)	247, 563
BsgI	GTGCAG	2 cut(s)	159, 224
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	5, 192, 209, 396
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	6, 168
BslI	CCNNNNNNNGG	2 cut(s)	606, 681
BsmAI	GTCTC	3 cut(s)	234, 314, 444
BsnI	GGCC	4 cut(s)	5, 192, 209, 396
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	144
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	220, 317
BspANI	GGCC	4 cut(s)	5, 192, 209, 396
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	317
BspHI	TCATGA	2 cut(s)	294, 616
BspOI	GCTAGC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	558, 651
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	3 cut(s)	71, 398, 638
Bst4CI	ACNGT	3 cut(s)	308, 353, 501
BstC8I	GCNNGC	6 cut(s)	128, 207, 253, 394, 546, 687
BstDEI	CTNAG	4 cut(s)	84, 122, 267, 424
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	3 cut(s)	234, 314, 444
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 146, 398, 520, 529, 557
BstNI	CCWGG	3 cut(s)	71, 398, 638
BstSCI	CCNGG	4 cut(s)	69, 166, 396, 636
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	465, 535, 547, 646
BsuRI	GGCC	4 cut(s)	5, 192, 209, 396
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	3 cut(s)	237, 264, 324
Cac8I	GCNNGC	6 cut(s)	128, 207, 253, 394, 546, 687
CciI	TCATGA	2 cut(s)	294, 616
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	420
CviAII	CATG	4 cut(s)	295, 433, 482, 617
DdeI	CTNAG	4 cut(s)	84, 122, 267, 424
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	593
EaeI	YGGCCR	3 cut(s)	3, 190, 394
Eco47I	GGWCC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	3 cut(s)	69, 396, 636
EcoT22I	ATGCAT	1 cut(s)	651
FaeI	CATG	4 cut(s)	298, 436, 485, 620
FaiI	YATR	8 cut(s)	152, 158, 296, 414, 434, 483, 584, 618
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	4 cut(s)	294, 432, 481, 616
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	479, 549, 561, 660
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	479, 549, 561, 660
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	4 cut(s)	479, 549, 561, 660
GsaI	CCCAGC	2 cut(s)	251, 567
HaeIII	GGCC	4 cut(s)	5, 192, 209, 396
HapII	CCGG	2 cut(s)	6, 168
Hin1II	CATG	4 cut(s)	298, 436, 485, 620
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	6, 168
HphI	GGTGA	1 cut(s)	579
Hpy166II	GTNNAC	3 cut(s)	217, 324, 356
Hpy188III	TCNNGA	3 cut(s)	295, 617, 653
Hpy8I	GTNNAC	3 cut(s)	217, 324, 356
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	308, 353, 501
HpyCH4V	TGCA	9 cut(s)	99, 140, 205, 324, 481, 538, 551, 644, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 146, 398, 520, 529, 557
HpyF3I	CTNAG	4 cut(s)	84, 122, 267, 424
Hsp92II	CATG	4 cut(s)	298, 436, 485, 620
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	118, 340
Lsp1109I	GCAGC	4 cut(s)	465, 535, 547, 646
LweI	GCATC	5 cut(s)	300, 523, 525, 646, 658
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	73, 585
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	55, 660
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	6 cut(s)	33, 64, 283, 299, 525, 690
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	446
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	5 cut(s)	36, 332, 375, 459, 474
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	2 cut(s)	6, 168
MspR9I	CCNGG	4 cut(s)	71, 168, 398, 638
MvaI	CCWGG	3 cut(s)	71, 398, 638
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	127, 146, 398, 520, 529, 557
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	298, 436, 485, 620
NmuCI	GTSAC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	651
PagI	TCATGA	2 cut(s)	294, 616
PdmI	GAANNNNTTC	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	480, 550, 562, 661
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PpuMI	RGGWCCY	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	3 cut(s)	69, 396, 636
PspFI	CCCAGC	2 cut(s)	247, 563
PspGI	CCWGG	3 cut(s)	69, 396, 636
PspPI	GGNCC	1 cut(s)	420
PspPPI	RGGWCCY	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	5 cut(s)	36, 332, 375, 459, 474
SatI	GCNGC	4 cut(s)	479, 549, 561, 660
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	4 cut(s)	71, 168, 398, 638
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	5 cut(s)	300, 523, 525, 646, 658
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	654
Sse9I	AATT	6 cut(s)	33, 64, 283, 299, 525, 690
SsiI	CCGC	2 cut(s)	220, 317
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	69, 166, 396, 636
TaaI	ACNGT	3 cut(s)	308, 353, 501
TaqI	TCGA	2 cut(s)	113, 632
TasI	AATT	6 cut(s)	33, 64, 283, 299, 525, 690
Tru1I	TTAA	5 cut(s)	36, 332, 375, 459, 474
Tru9I	TTAA	5 cut(s)	36, 332, 375, 459, 474
TscAI	CASTG	3 cut(s)	244, 271, 331
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	4 cut(s)	478, 548, 560, 659
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	5 cut(s)	56, 311, 605, 618, 654
TspRI	CASTG	3 cut(s)	244, 271, 331
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.