Rh3BG320900
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009648
Physical Location & Seq
Reverse (-)
33012847 .. 33013338
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG320900.1

Sequence Viewer

Length: 492 bp
ATGGTGGCTAGGGCCAACAAGGGTCGTCAGAGAATCAAGATGCGCAAATTGGAAAACGACAGTAAACGGTACATTGTCCAAAAGAAGTTGTGGCGTTTCAAGAACAGTAGTGAACCCTGCACCCTTACTGGTGCAGAGATTGCCGTGATAATAGATTCCCCCGGAAAGAATATATTCTCGTTCGGGCACCCTTCTGTGCAGACCATCATTGACCGCTATGAGAACATGAATCCTTACTCAACCAACACTGAGCAACTGACGGAGGCTGCATGCAGAAGAAAAGTAGAGGATCTCATGGCAGAATTAGATGCTATTAATGAGGATCTGCAAAATGAGAAGATGAAAAGAAAAATTCTTAATCAAGAGGAGAGGGCCGGCCAGACTCATCACTGGTATGAGAGGTCCGTTGAATGCATGGACGATAAGCAACAACTAAACTTCTTTGGGAGTGCATTGAGGGAGCTTGGTGGTATGGTGGCCCCAACACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

163

Amino Acids

18.88

Weight (kDa)

8.76

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 186
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 297, 330
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 351
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 2 cut(s) 100, 410
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
AlwI GGATC 2 cut(s) 297, 330
AoxI GGCC 4 cut(s) 12, 372, 376, 477
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 351
AseI ATTAAT 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 12, 372, 402, 478
AsuC2I CCSGG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 4 cut(s) 12, 372, 402, 478
BmiI GGNNCC 2 cut(s) 188, 480
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 30, 298
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 133, 395
BseDI CCNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 133, 395
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 3 cut(s) 103, 153, 218
BshFI GGCC 4 cut(s) 14, 374, 378, 479
BshNI GGYRCC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 162, 375
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 4 cut(s) 14, 374, 378, 479
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 289, 322
BspACI CCGC 1 cut(s) 214
BspANI GGCC 4 cut(s) 14, 374, 378, 479
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 188, 480
BspPI GGATC 2 cut(s) 297, 330
BspT107I GGYRCC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 2 cut(s) 133, 395
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 289, 322
Bst4CI ACNGT 3 cut(s) 62, 69, 107
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 271, 376
BstDEI CTNAG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 2 cut(s) 292, 325
BstMBI GATC 2 cut(s) 289, 322
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 289, 322
BstYI RGATCY 2 cut(s) 289, 322
BsuRI GGCC 4 cut(s) 14, 374, 378, 479
BtsIMutI CAGTG 2 cut(s) 246, 388
Cac8I GCNNGC 2 cut(s) 271, 376
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 12, 372, 402, 478
Csp6I GTAC 1 cut(s) 70
CviAII CATG 4 cut(s) 226, 270, 295, 415
CviJI RGCY 7 cut(s) 8, 14, 266, 374, 378, 463, 479
CviKI_1 RGCY 7 cut(s) 8, 14, 266, 374, 378, 463, 479
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 291, 324
DpnII GATC 2 cut(s) 289, 322
EaeI YGGCCR 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 4 cut(s) 229, 273, 298, 418
FaiI YATR 8 cut(s) 173, 219, 227, 271, 296, 396, 416, 473
FatI CATG 4 cut(s) 225, 269, 294, 414
Fnu4HI GCNGC 1 cut(s) 267
FseI GGCCGGCC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 9
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 4 cut(s) 14, 374, 378, 479
HapII CCGG 2 cut(s) 162, 375
HhaI GCGC 1 cut(s) 45
Hin1II CATG 4 cut(s) 229, 273, 298, 418
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 4 cut(s) 33, 155, 229, 382
HpaII CCGG 2 cut(s) 162, 375
Hpy166II GTNNAC 2 cut(s) 65, 113
Hpy188I TCNGA 2 cut(s) 30, 491
Hpy188III TCNNGA 3 cut(s) 37, 100, 362
Hpy8I GTNNAC 2 cut(s) 65, 113
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 3 cut(s) 62, 69, 107
HpyCH4V TGCA 8 cut(s) 120, 134, 199, 269, 273, 328, 414, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 4 cut(s) 229, 273, 298, 418
HspAI GCGC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 289, 322
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 6 cut(s) 114, 130, 175, 376, 388, 392
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 30, 298
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 291, 324
MboI GATC 2 cut(s) 289, 322
MboII GAAGA 2 cut(s) 288, 349
MflI RGATCY 2 cut(s) 289, 322
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 47, 302, 351
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 7 cut(s) 256, 280, 313, 358, 363, 393, 450
Mph1103I ATGCAT 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 2 cut(s) 315, 357
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 2 cut(s) 162, 375
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 416
MwoI GCNNNNNNNGC 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 162
NdeII GATC 2 cut(s) 289, 322
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 4 cut(s) 229, 273, 298, 418
NlaIV GGNNCC 2 cut(s) 188, 480
NsbI TGCGCA 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PctI GAATGC 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 33, 155, 229
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 188, 480
PspPI GGNCC 4 cut(s) 12, 372, 402, 478
PsuI RGATCY 2 cut(s) 289, 322
RigI GGCCGGCC 1 cut(s) 378
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 2 cut(s) 315, 357
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 289, 322
Sau96I GGNCC 4 cut(s) 12, 372, 402, 478
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 189
SetI ASST 2 cut(s) 404, 465
SfaNI GCATC 2 cut(s) 30, 298
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 393
SphI GCATGC 1 cut(s) 273
Sse9I AATT 3 cut(s) 47, 302, 351
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 62, 69, 107
TasI AATT 3 cut(s) 47, 302, 351
TfiI GAWTC 3 cut(s) 33, 155, 229
Tru1I TTAA 2 cut(s) 315, 357
Tru9I TTAA 2 cut(s) 315, 357
TscAI CASTG 2 cut(s) 253, 395
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 242, 356
TspGWI ACGGA 2 cut(s) 275, 394
TspRI CASTG 2 cut(s) 253, 395
VpaK11BI GGWCC 1 cut(s) 402
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 1 cut(s) 351
XceI RCATGY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.