Rh6BG028100
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009648
Physical Location & Seq
Forward (+)
4184596 .. 4185394
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG028100.1

Sequence Viewer

Length: 381 bp
ATGTGTGCCAACAGATGGGGTAAAAGTAGCGCAATGTTGGAGATTGGCGAAGAAGCATACTCGTTCGGCTGCCCTCATGTGCCAGCAGTTATTGACCGCTATGATAACATGAACGCTCTCTTGGCCAACATTGGCAACACTGAGCAGCTCATGGAGGCTGCACGTAGAAGACAAACATACGATTTGATGGAGGAGTTGGATGCTATTAATGAGGATCTACACAAAGAGACAATGAAGAGAAAGGTGCTTAATAAAAAGGAGAGGGACTGCCAGGCTCAGAACTGGTATGAGAGGTCCATTGACGGCATGAACGATTCAGCACAATTAAACTTCTTTGAGAGTGCGTTGAGGGAGTTAGGCAGTATGGTGACCCAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

126

Amino Acids

14.55

Weight (kDa)

5.06

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 15
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 15
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 222
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 3 cut(s) 69, 145, 158
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 56, 145, 157
BccI CCATC 2 cut(s) 9, 181
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 3 cut(s) 70, 146, 159
BlsI GCNGC 3 cut(s) 71, 147, 160
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 132, 290
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 3 cut(s) 56, 145, 157
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 133, 289
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 287
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 141, 276
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 56, 145, 157
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 138, 376
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 294
CviAII CATG 4 cut(s) 77, 109, 151, 307
CviJI RGCY 5 cut(s) 69, 125, 148, 158, 275
CviKI_1 RGCY 5 cut(s) 69, 125, 148, 158, 275
DdeI CTNAG 2 cut(s) 141, 276
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 367
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 4 cut(s) 80, 112, 154, 310
FaiI YATR 9 cut(s) 58, 78, 102, 110, 152, 178, 288, 308, 365
FaqI GGGAC 1 cut(s) 278
FatI CATG 4 cut(s) 76, 108, 150, 306
Fnu4HI GCNGC 3 cut(s) 70, 146, 159
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 70, 146, 159
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 70, 146, 159
HaeIII GGCC 1 cut(s) 125
HhaI GCGC 1 cut(s) 32
Hin1II CATG 4 cut(s) 80, 112, 154, 310
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 314
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 279
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 141, 276
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 4 cut(s) 80, 112, 154, 310
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 96, 257, 268, 284
Lsp1109I GCAGC 3 cut(s) 56, 145, 157
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 367
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 62, 180, 247
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 1 cut(s) 323
MluNI TGGCCA 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 18, 177
MnlI CCTC 7 cut(s) 84, 148, 184, 205, 255, 285, 342
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 3 cut(s) 207, 249, 326
Msp20I TGGCCA 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 214
NlaIII CATG 4 cut(s) 80, 112, 154, 310
NmuCI GTSAC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 15
PkrI GCNGC 3 cut(s) 71, 147, 160
Ppu21I YACGTR 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 270
PspPI GGNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 214
SaqAI TTAA 3 cut(s) 207, 249, 326
SatI GCNGC 3 cut(s) 70, 146, 159
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 272
SetI ASST 4 cut(s) 150, 166, 246, 296
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 294
Sse9I AATT 1 cut(s) 323
SsiI CCGC 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 270
TaiI ACGT 1 cut(s) 166
TasI AATT 1 cut(s) 323
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 207, 249, 326
Tru9I TTAA 3 cut(s) 207, 249, 326
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 3 cut(s) 69, 145, 158
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 125, 248, 323
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 294
VspI ATTAAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.