RchiOBHm_Chr6g0245921
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009648
Physical Location & Seq
Forward (+)
1646519 .. 1647268
750 bp
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UTR
Exon/CDS
Intron
PRQ22043

Sequence Viewer

Length: 750 bp
ATGGGTCGTCAAAGAATCGAGGTGCACAAATTGGAAAAGGCTAGTAACCCGCAGGTTACATTCTCCAAAAGGAGGTTTGGCGTTTTCAAGAAAGCCAGCGAGCTCTGCACCCTCAGTGGTGCAGAGATTGCTCTAATCGTAGATTCTCCAGCAAAGAAGACATATTCGTTTGGCTACCCTTCTATGGAAGCTGTTATTGACCGCTATGAGAACATGAATGCTCCCTTGGCGAACAACGGCAACACTGAGCAGCTCATGGAGGCTGCACGTAGAAGACAAACACACTATTTGATGGCGGAGTTGGATGCTATCAATGAGGATCTACACAAAGAGACACTGAAGAGAAAGGTGCTTAATAAAAAGGAGAAGGCTGGCCAGACTCAGAATTGGTATGAGAGGTCCGTTGATTGCATAAACGATAAAGAACAATTAAACTTCTTCAAGAATGTATTGAGGGAGCTAGGCGATATGGTGGCCCAACATTCTGAAATGCTGCGGCAAAAGCAGGTTGGACTAATGCAGCAAAACGCTGCAATGGTGCAGCAAGCCGAGCTGATGCAGCAAAACACTACTATTGGGGCTATTAGGGACCTCATGCAACCGAGGGCAGCTGCTGCTCGGCCGTTTTATAGGGGGAATTCTTCGAGCAGCAATGTGATGAATCCCTATGGTCCTATGCCTTCTTCTTCTCCTCTACCTCCTCCTGCCGAACCCTGGAATCCAAATCTTGAAAGTCGCCAATTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

249

Amino Acids

28.34

Weight (kDa)

9.28

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 57 3.8e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 43, 496
AciI CCGC 4 cut(s) 50, 202, 296, 496
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 2 cut(s) 373, 620
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 72, 184, 714
AgsI TTSAA 3 cut(s) 88, 442, 731
AjnI CCWGG 1 cut(s) 713
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 6 cut(s) 103, 191, 253, 460, 553, 611
AluI AGCT 6 cut(s) 103, 191, 253, 460, 553, 611
Alw21I GWGCWC 2 cut(s) 27, 105
Alw26I GTCTC 1 cut(s) 326
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 3 cut(s) 373, 474, 620
ApaLI GTGCAC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 637
AspS9I GGNCC 4 cut(s) 399, 475, 589, 671
AvaII GGWCC 3 cut(s) 399, 589, 671
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 375
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 2 cut(s) 164, 280
Bbv12I GWGCWC 2 cut(s) 27, 105
BccI CCATC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 253, 607
BciT130I CCWGG 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 2 cut(s) 42, 461
BfuAI ACCTGC 2 cut(s) 43, 496
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 3 cut(s) 399, 589, 671
BmgT120I GGNCC 4 cut(s) 399, 475, 589, 671
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 715
BmsI GCATC 2 cut(s) 295, 546
BpiI GAAGAC 2 cut(s) 164, 280
BpmI CTGGAG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 225, 602, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 184, 714
Bse3DI GCAATG 2 cut(s) 540, 658
BseBI CCWGG 1 cut(s) 715
BseDI CCNNGG 3 cut(s) 225, 602, 713
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 72, 184, 714
BseMI GCAATG 2 cut(s) 540, 658
BseMII CTCAG 3 cut(s) 127, 237, 395
BseRI GAGGAG 2 cut(s) 681, 690
BseSI GKGCMC 1 cut(s) 27
BseX3I CGGCCG 1 cut(s) 620
BsgI GTGCAG 4 cut(s) 91, 141, 249, 560
Bsh1285I CGRYCG 1 cut(s) 623
BshFI GGCC 3 cut(s) 375, 476, 622
BsiEI CGRYCG 1 cut(s) 623
BsiHKAI GWGCWC 2 cut(s) 27, 105
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 3 cut(s) 72, 184, 714
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 375, 476, 622
Bsp1286I GDGCHC 2 cut(s) 27, 105
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 4 cut(s) 50, 202, 296, 496
BspANI GGCC 3 cut(s) 375, 476, 622
BspCNI CTCAG 3 cut(s) 126, 238, 394
BspLI GGNNCC 1 cut(s) 590
BspMI ACCTGC 2 cut(s) 43, 496
BspPI GGATC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 540, 658
BssECI CCNNGG 3 cut(s) 225, 602, 713
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 128, 614
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 97, 101, 373, 546
BstDEI CTNAG 3 cut(s) 113, 246, 381
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 319
BstMCI CGRYCG 1 cut(s) 623
BstMWI GCNNNNNNNGC 7 cut(s) 105, 128, 227, 502, 550, 559, 614
BstNI CCWGG 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 713
BstSLI GKGCMC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 164, 280
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BstZI CGGCCG 1 cut(s) 620
BsuRI GGCC 3 cut(s) 375, 476, 622
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 121, 243, 335
BveI ACCTGC 2 cut(s) 43, 496
Cac8I GCNNGC 4 cut(s) 97, 101, 373, 546
CaiI CAGNNNCTG 1 cut(s) 614
Cfr13I GGNCC 4 cut(s) 399, 475, 589, 671
CviAII CATG 3 cut(s) 214, 256, 595
DdeI CTNAG 3 cut(s) 113, 246, 381
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 373, 620
EagI CGGCCG 1 cut(s) 620
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
EciI GGCGGA 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 3 cut(s) 399, 589, 671
Eco52I CGGCCG 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 589
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 217, 259, 598
FaqI GGGAC 1 cut(s) 602
FatI CATG 3 cut(s) 213, 255, 594
FauI CCCGC 1 cut(s) 57
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 2 cut(s) 42, 461
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 3 cut(s) 375, 476, 622
Hin1II CATG 3 cut(s) 217, 259, 598
HinfI GANTC 5 cut(s) 15, 143, 379, 661, 718
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 384, 487
Hpy188III TCNNGA 3 cut(s) 88, 442, 728
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 189, 361, 690
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 128, 227, 502, 550, 559, 614
HpyF3I CTNAG 3 cut(s) 113, 246, 381
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 3 cut(s) 217, 259, 598
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 2 cut(s) 226, 457
LpnPI CCDG 9 cut(s) 38, 109, 162, 357, 389, 491, 700, 717, 727
LweI GCATC 2 cut(s) 295, 546
MaeI CTAG 2 cut(s) 42, 461
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 44, 55
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 169, 285, 352, 430, 633, 675, 678
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 27, 105
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 5 cut(s) 29, 385, 428, 637, 740
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 282, 490
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 354, 431
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 715
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 715
MwoI GCNNNNNNNGC 7 cut(s) 105, 128, 227, 502, 550, 559, 614
NdeII GATC 1 cut(s) 319
NlaIII CATG 3 cut(s) 217, 259, 598
NlaIV GGNNCC 1 cut(s) 590
NmeAIII GCCGAG 2 cut(s) 574, 598
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 15, 143, 661, 718
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 589
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 713
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 4 cut(s) 399, 475, 589, 671
PspPPI RGGWCCY 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 354, 431
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 4 cut(s) 399, 475, 589, 671
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 2 cut(s) 27, 105
SfaNI GCATC 2 cut(s) 295, 546
SinI GGWCC 3 cut(s) 399, 589, 671
Sse9I AATT 5 cut(s) 29, 385, 428, 637, 740
SsiI CCGC 4 cut(s) 50, 202, 296, 496
SspMI CTAG 2 cut(s) 42, 461
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 713
StyI CCWWGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 18, 644
TasI AATT 5 cut(s) 29, 385, 428, 637, 740
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 4 cut(s) 15, 143, 661, 718
Tru1I TTAA 2 cut(s) 354, 431
Tru9I TTAA 2 cut(s) 354, 431
TscAI CASTG 3 cut(s) 121, 250, 342
TspDTI ATGAA 2 cut(s) 230, 674
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 3 cut(s) 121, 250, 342
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 3 cut(s) 399, 589, 671
XapI RAATTY 1 cut(s) 637
XspI CTAG 2 cut(s) 42, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.