Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Reverse (-)

5392186 .. 5393303

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGTCAACCAACTCTAACAACGAAGTCGCTCACAAGTTTCGCTTCTTCAAGGCATACAAAGATGGTCGTGTCGAAATATTCTACAACACCCAAAAAGTCCCACCTTCCACCGACTCCGTCACCGGAGTTCAATCCAAAGACGTCATCATTTCATCTGAACCCGCCGTTTCTGCCCGTATCTTCCTACCCAAGATCCACGACCCGACCCAGAAATTCCCCGTCCTGTTCTACATCCACGGCGGCGGGTTCTGCTTCGAGTCGGCTTTCTCTCCTATATTTCACAAGCACCTCACCTCCTTAGCCGCGGAAGCCAACGCCATTGCCGTCTCAGTTGAATACGGGCTGTTCCCGGATCGACCCATACCCGCTTGCTACGACGATACATGGGCCGCCCTAAAATGGGTCCAGTCCCACTCGACCCGGTCCGGACCCGACCCGTGGATGAACTTGTACGCCGACTTGGACCGGGTGTTCCTATGCGGCGACAGCGGCGGAGCCAACATGTGCAACAACCTGGCGGTTCGGGTCGGGTCAGTCGGGTTACCCGGAGTGAAAGTGGCGGGAATGGTGATGGTGCATCCCTTTTTTGGCGGGTTGGCCGTGGACGACGAAATGTGGCTGTACATGTGTCCGGAGAACGGAGGGGTGCAGGACAGGAGGCTGAGGCCGCCGGCGGAGGATCTGGCGAAGCTTGGGTGCGAGAGGGTGTTGATATTTTTTGCGGAGAAGGATCATCTGAGAGAGGTAGGGCAGTGGTACTGTGATGAGCTGAAGAAGAGTGAGTGGGGTGGGAGTGTCGAGGTAGTGGAGCATGAGGATGAGTTTCATGAGTTTCACCTTTTGAGTGAACCTGAGGGTGACAACGCTTTGGATTTGATCAAGAGGTTTGGTTCTTTCATCAACCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

305

Amino Acids

34.01

Weight (kDa)

5.21

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	52 - 175	6e-09	Carboxylesterase family
BD-FAE	PF20434	61 - 171	7.1e-10	BD-FAE
Abhydrolase_3	PF07859	76 - 280	8.2e-39	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	308
AccIII	TCCGGA	2 cut(s)	428, 634
AclWI	GGATC	4 cut(s)	190, 363, 690, 741
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	794
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	455, 626, 761
AfiI	CCNNNNNNNGG	5 cut(s)	402, 403, 441, 590, 641
AflIII	ACRYGT	2 cut(s)	504, 627
AgsI	TTSAA	3 cut(s)	52, 134, 338
AjnI	CCWGG	1 cut(s)	516
AloI	GAACNNNNNNTCC	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	694, 772
AluI	AGCT	2 cut(s)	694, 772
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	4 cut(s)	190, 363, 690, 741
Aor13HI	TCCGGA	2 cut(s)	428, 634
AoxI	GGCC	3 cut(s)	390, 600, 668
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	5 cut(s)	390, 406, 426, 431, 466
AsuC2I	CCSGG	4 cut(s)	353, 424, 470, 549
AsuHPI	GGTGA	5 cut(s)	115, 286, 583, 830, 872
AvaII	GGWCC	4 cut(s)	406, 426, 431, 466
AxyI	CCTNAGG	1 cut(s)	855
BbvCI	CCTCAGC	1 cut(s)	665
BccI	CCATC	2 cut(s)	59, 568
BceAI	ACGGC	4 cut(s)	152, 256, 311, 587
BciT130I	CCWGG	1 cut(s)	518
BclI	TGATCA	1 cut(s)	879
BcnI	CCSGG	4 cut(s)	353, 424, 470, 549
BcoDI	GTCTC	1 cut(s)	334
BisI	GCNGC	6 cut(s)	244, 306, 393, 484, 493, 671
BlsI	GCNGC	6 cut(s)	245, 307, 394, 485, 494, 672
Bme1390I	CCNGG	5 cut(s)	353, 424, 470, 518, 549
Bme18I	GGWCC	4 cut(s)	406, 426, 431, 466
BmgT120I	GGNCC	5 cut(s)	390, 406, 426, 431, 466
BmiI	GGNNCC	3 cut(s)	407, 433, 499
BmrFI	CCNGG	5 cut(s)	353, 424, 470, 518, 549
BmsI	GCATC	1 cut(s)	589
Bpu10I	CCTNAGC	2 cut(s)	301, 665
BpuMI	CCSGG	4 cut(s)	353, 424, 470, 549
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	238, 306, 440, 603
BsaWI	WCCGGW	3 cut(s)	125, 428, 634
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 543, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	402, 403, 441, 590, 641
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	855
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	2 cut(s)	428, 634
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	4 cut(s)	238, 306, 440, 603
BseGI	GGATG	4 cut(s)	234, 450, 580, 826
BseLI	CCNNNNNNNGG	5 cut(s)	402, 403, 441, 590, 641
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	345, 656, 731, 846
BseNI	ACTGG	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	392, 602, 670
BsiSI	CCGG	8 cut(s)	126, 353, 424, 429, 469, 549, 635, 674
BslFI	GGGAC	2 cut(s)	86, 397
BslI	CCNNNNNNNGG	5 cut(s)	402, 403, 441, 590, 641
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	86, 397
BsnI	GGCC	3 cut(s)	392, 602, 670
Bsp13I	TCCGGA	2 cut(s)	428, 634
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	195, 355, 682, 733, 879
BspANI	GGCC	3 cut(s)	392, 602, 670
BspCNI	CTCAG	4 cut(s)	344, 657, 732, 847
BspEI	TCCGGA	2 cut(s)	428, 634
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	407, 433, 499
BspPI	GGATC	4 cut(s)	190, 363, 690, 741
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	4 cut(s)	238, 306, 440, 603
BssMI	GATC	5 cut(s)	195, 355, 682, 733, 879
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	1 cut(s)	773
BstACI	GRCGYC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	373, 675
BstDEI	CTNAG	5 cut(s)	301, 331, 665, 740, 855
BstDSI	CCRYGG	4 cut(s)	238, 306, 440, 603
BstEII	GGTNACC	1 cut(s)	543
BstF5I	GGATG	4 cut(s)	234, 450, 580, 826
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	5 cut(s)	198, 358, 685, 736, 882
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	5 cut(s)	195, 355, 682, 733, 879
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 252, 311, 489, 492, 670
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	2 cut(s)	508, 631
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	5 cut(s)	351, 422, 468, 516, 547
BstUI	CGCG	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	195, 682
BstYI	RGATCY	2 cut(s)	195, 682
Bsu36I	CCTNAGG	1 cut(s)	855
BsuRI	GGCC	3 cut(s)	392, 602, 670
BtgI	CCRYGG	4 cut(s)	238, 306, 440, 603
BtsCI	GGATG	4 cut(s)	234, 450, 580, 826
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	1 cut(s)	761
Cac8I	GCNNGC	2 cut(s)	373, 675
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	5 cut(s)	390, 406, 426, 431, 466
Cfr42I	CCGCGG	1 cut(s)	309
CpoI	CGGWCCG	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	454, 625, 760
CspI	CGGWCCG	1 cut(s)	426
CviAII	CATG	5 cut(s)	387, 505, 628, 815, 830
CviQI	GTAC	3 cut(s)	454, 625, 760
DdeI	CTNAG	5 cut(s)	301, 331, 665, 740, 855
DpnI	GATC	5 cut(s)	197, 357, 684, 735, 881
DpnII	GATC	5 cut(s)	195, 355, 682, 733, 879
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
EciI	GGCGGA	2 cut(s)	510, 692
Eco47I	GGWCC	4 cut(s)	406, 426, 431, 466
Eco57I	CTGAAG	1 cut(s)	794
Eco81I	CCTNAGG	1 cut(s)	855
Eco91I	GGTNACC	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	5 cut(s)	390, 508, 631, 818, 833
FaiI	YATR	9 cut(s)	58, 278, 365, 388, 481, 506, 629, 816, 831
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	86, 397
FatI	CATG	5 cut(s)	386, 504, 627, 814, 829
FauI	CCCGC	5 cut(s)	172, 239, 376, 556, 587
FbaI	TGATCA	1 cut(s)	879
Fnu4HI	GCNGC	6 cut(s)	244, 306, 393, 484, 493, 671
FokI	GGATG	4 cut(s)	221, 457, 567, 833
Fsp4HI	GCNGC	6 cut(s)	244, 306, 393, 484, 493, 671
GluI	GCNGC	6 cut(s)	244, 306, 393, 484, 493, 671
HaeIII	GGCC	3 cut(s)	392, 602, 670
HapII	CCGG	8 cut(s)	126, 353, 424, 429, 469, 549, 635, 674
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	390, 508, 631, 818, 833
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	3 cut(s)	5, 116, 260
HpaII	CCGG	8 cut(s)	126, 353, 424, 429, 469, 549, 635, 674
HphI	GGTGA	5 cut(s)	115, 286, 583, 830, 872
Hpy166II	GTNNAC	3 cut(s)	9, 607, 851
Hpy188I	TCNGA	2 cut(s)	160, 741
Hpy188III	TCNNGA	4 cut(s)	429, 635, 830, 883
Hpy8I	GTNNAC	3 cut(s)	9, 607, 851
Hpy99I	CGWCG	2 cut(s)	383, 614
HpyAV	CCTTC	2 cut(s)	117, 724
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	510, 580, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 252, 311, 489, 492, 670
HpyF3I	CTNAG	5 cut(s)	301, 331, 665, 740, 855
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	390, 508, 631, 818, 833
Kpn2I	TCCGGA	2 cut(s)	428, 634
KroI	GCCGGC	1 cut(s)	673
KroNI	GCCGGC	1 cut(s)	675
Ksp22I	TGATCA	1 cut(s)	879
KspI	CCGCGG	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	195, 355, 682, 733, 879
LmnI	GCTCC	2 cut(s)	497, 811
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	121, 543, 860
MalI	GATC	5 cut(s)	197, 357, 684, 735, 881
MboI	GATC	5 cut(s)	195, 355, 682, 733, 879
MboII	GAAGA	4 cut(s)	40, 175, 787, 790
MflI	RGATCY	2 cut(s)	195, 682
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	3 cut(s)	14, 110, 269
MreI	CGCCGGCG	1 cut(s)	673
MroI	TCCGGA	2 cut(s)	428, 634
MroNI	GCCGGC	1 cut(s)	673
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	2 cut(s)	308, 492
MspI	CCGG	8 cut(s)	126, 353, 424, 429, 469, 549, 635, 674
MspR9I	CCNGG	5 cut(s)	353, 424, 470, 518, 549
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	6 cut(s)	173, 252, 311, 489, 492, 670
NaeI	GCCGGC	1 cut(s)	675
NciI	CCSGG	4 cut(s)	353, 424, 470, 549
NdeII	GATC	5 cut(s)	195, 355, 682, 733, 879
NgoMIV	GCCGGC	1 cut(s)	673
NlaIII	CATG	5 cut(s)	390, 508, 631, 818, 833
NlaIV	GGNNCC	3 cut(s)	407, 433, 499
NmuCI	GTSAC	2 cut(s)	121, 860
NspI	RCATGY	2 cut(s)	508, 631
PagI	TCATGA	1 cut(s)	829
PciI	ACATGT	2 cut(s)	504, 627
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	675
PflFI	GACNNNGTC	2 cut(s)	119, 424
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	6 cut(s)	245, 307, 394, 485, 494, 672
PleI	GAGTC	3 cut(s)	13, 110, 268
PpsI	GAGTC	3 cut(s)	13, 110, 268
PscI	ACATGT	2 cut(s)	504, 627
Psp6I	CCWGG	1 cut(s)	516
PspEI	GGTNACC	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	407, 433, 499
PspPI	GGNCC	5 cut(s)	390, 406, 426, 431, 466
PsuI	RGATCY	2 cut(s)	195, 682
PsyI	GACNNNGTC	2 cut(s)	119, 424
RsaI	GTAC	3 cut(s)	455, 626, 761
RsaNI	GTAC	3 cut(s)	454, 625, 760
RseI	CAYNNNNRTG	1 cut(s)	819
Rsr2I	CGGWCCG	1 cut(s)	426
RsrII	CGGWCCG	1 cut(s)	426
SacII	CCGCGG	1 cut(s)	309
SatI	GCNGC	6 cut(s)	244, 306, 393, 484, 493, 671
Sau3AI	GATC	5 cut(s)	195, 355, 682, 733, 879
Sau96I	GGNCC	5 cut(s)	390, 406, 426, 431, 466
SchI	GAGTC	3 cut(s)	14, 110, 269
ScrFI	CCNGG	5 cut(s)	353, 424, 470, 518, 549
SfaNI	GCATC	1 cut(s)	589
Sfr303I	CCGCGG	1 cut(s)	309
SgrAI	CRCCGGYG	1 cut(s)	673
SgrBI	CCGCGG	1 cut(s)	309
SinI	GGWCC	4 cut(s)	406, 426, 431, 466
SmiMI	CAYNNNNRTG	1 cut(s)	819
Sse9I	AATT	1 cut(s)	215
SspI	AATATT	1 cut(s)	81
StyD4I	CCNGG	5 cut(s)	351, 422, 468, 516, 547
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	5 cut(s)	75, 258, 358, 419, 801
TasI	AATT	1 cut(s)	215
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	6 cut(s)	246, 308, 395, 486, 495, 673
TscAI	CASTG	1 cut(s)	761
TseFI	GTSAC	2 cut(s)	121, 860
Tsp45I	GTSAC	2 cut(s)	121, 860
TspDTI	ATGAA	4 cut(s)	144, 461, 818, 889
TspGWI	ACGGA	2 cut(s)	109, 657
TspRI	CASTG	1 cut(s)	761
Tth111I	GACNNNGTC	2 cut(s)	119, 424
VpaK11BI	GGWCC	4 cut(s)	406, 426, 431, 466
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	2 cut(s)	508, 631
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.