Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Reverse (-)

13707316 .. 13708924

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTGTCACCATCTGGCAATTCGGATCAGGTCTAATGAGTTACTCGAGGTCAAAGTTGTGGGAATTGTTAGAACGGGTGCACCATTTGGCGGGTTGGAGGAGGATGACGAAATGTGGCTGTACATGTATCCGGAGAACGGTGGGGTGCAGGACAGGAGGCTGAGGCTGAAACTGCCTGCAGAGGATTTCGCCAGGATTGGGTATGGAGTCCATCCTCCACGGATGGCGGCGAGGGCGCTTGCTAATGCATTGGGATGTAGAGAAAATGCACAGCTGCCGGAGTTGTGGGAAGATGCAGGGCGGTCGAAGTCTTACGTCTCCGAGGGTTGTGTGGCTTCCGGTGTTGATGTCGTTGACATCTCTTTATCTGGGTCGTCTATTGGTAAGGGCGTCAGGGTCCCTTGCTCCATATCACTGGATCCACGGTGCCGGACGGCCGGAGGTATGGTGGCAGGTAGGTGCGGCTGCGACAAGATCACAAGCTTTGTTGAGTTGACTGCAAGGGCAAACCCTAATTGGATTTGGGCTTTGCTATGTTTGCCAGAATTGGGCCCAAGCCCTAGTGAGCTAACTAGGACTGCAACATGTGGGCTTTTTCGGTTTTGGATTCAGATTTGGGATCCCCGTGGATTTATTATAAAAACTTGGGATCCAAGACTATTTTGTTCTAGGTACCTAATTTTTTATTGGAATCAATGCTTGAGAGGAATTGCTGGGATTATTGATTTGAGGTTGTCAGCAAGTTTACTGATGATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

253

Amino Acids

28.1

Weight (kDa)

8.3

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	443
Acc65I	GGTACC	1 cut(s)	672
AccB1I	GGYRCC	2 cut(s)	426, 672
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	4 cut(s)	90, 227, 301, 462
AclWI	GGATC	7 cut(s)	32, 413, 426, 614, 627, 644, 657
AcoI	YGGCCR	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	2 cut(s)	122, 674
AfiI	CCNNNNNNNGG	4 cut(s)	89, 137, 198, 548
AflIII	ACRYGT	2 cut(s)	123, 584
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	274, 483, 568
AluI	AGCT	3 cut(s)	274, 483, 568
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	7 cut(s)	32, 413, 426, 614, 627, 644, 657
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	2 cut(s)	435, 550
ApaI	GGGCCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	274, 465
Asp718I	GGTACC	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	397, 550, 551
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	2 cut(s)	82, 554
BamHI	GGATCC	3 cut(s)	418, 619, 649
BanI	GGYRCC	2 cut(s)	426, 672
BanII	GRGCYC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	261, 452
BccI	CCATC	3 cut(s)	18, 217, 219
BceAI	ACGGC	1 cut(s)	450
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	561, 573, 669
BfmI	CTRYAG	2 cut(s)	177, 758
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	4 cut(s)	228, 275, 463, 466
BlsI	GCNGC	4 cut(s)	229, 276, 464, 467
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	397, 550, 551
BmiI	GGNNCC	8 cut(s)	398, 399, 420, 428, 552, 621, 651, 674
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	218, 321, 422, 625
BsaWI	WCCGGW	2 cut(s)	130, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 137, 198, 548
Bse1I	ACTGG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	4 cut(s)	218, 321, 422, 625
BseGI	GGATG	4 cut(s)	109, 211, 228, 260
BseLI	CCNNNNNNNGG	4 cut(s)	89, 137, 198, 548
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	2 cut(s)	82, 554
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	261, 452
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	167
Bsh1285I	CGRYCG	2 cut(s)	305, 438
BshFI	GGCC	2 cut(s)	437, 552
BshNI	GGYRCC	2 cut(s)	426, 672
BsiEI	CGRYCG	2 cut(s)	305, 438
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	5 cut(s)	131, 278, 339, 430, 438
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	89, 137, 198, 548
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	437, 552
BsoBI	CYCGRG	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	82, 554
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	24, 418, 474, 619, 649
BspACI	CCGC	4 cut(s)	90, 227, 301, 462
BspANI	GGCC	2 cut(s)	437, 552
BspCNI	CTCAG	1 cut(s)	153
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	8 cut(s)	398, 399, 420, 428, 552, 621, 651, 674
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	7 cut(s)	32, 413, 426, 614, 627, 644, 657
BspT107I	GGYRCC	2 cut(s)	426, 672
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	4 cut(s)	218, 321, 422, 625
BssMI	GATC	5 cut(s)	24, 418, 474, 619, 649
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	140, 426
BstACI	GRCGYC	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	177, 240
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	3 cut(s)	218, 422, 625
BstF5I	GGATG	4 cut(s)	109, 211, 228, 260
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	5 cut(s)	27, 421, 477, 622, 652
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	24, 418, 474, 619, 649
BstMCI	CGRYCG	2 cut(s)	305, 438
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 233, 538
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	127, 588
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	2 cut(s)	177, 758
BstSLI	GKGCMC	2 cut(s)	82, 554
BstV1I	GCAGC	2 cut(s)	261, 452
BstX2I	RGATCY	3 cut(s)	418, 619, 649
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	3 cut(s)	418, 619, 649
BstZI	CGGCCG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	437, 552
BtgI	CCRYGG	3 cut(s)	218, 422, 625
BtsCI	GGATG	4 cut(s)	109, 211, 228, 260
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	177, 240
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	397, 550, 551
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	121, 673
CviAII	CATG	2 cut(s)	124, 585
CviQI	GTAC	2 cut(s)	121, 673
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	5 cut(s)	26, 420, 476, 621, 651
DpnII	GATC	5 cut(s)	24, 418, 474, 619, 649
EaeI	YGGCCR	1 cut(s)	435
EagI	CGGCCG	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	2 cut(s)	127, 588
FaiI	YATR	7 cut(s)	125, 204, 410, 446, 535, 586, 638
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	123, 584
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	228, 275, 463, 466
FokI	GGATG	4 cut(s)	116, 198, 235, 267
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	228, 275, 463, 466
FspBI	CTAG	3 cut(s)	561, 573, 669
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	4 cut(s)	228, 275, 463, 466
GsaI	CCCAGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	437, 552
HapII	CCGG	5 cut(s)	131, 278, 339, 430, 438
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	127, 588
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	2 cut(s)	355, 495
HindII	GTYRAC	2 cut(s)	355, 495
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	207, 607, 691, 754
HpaII	CCGG	5 cut(s)	131, 278, 339, 430, 438
Hpy166II	GTNNAC	4 cut(s)	80, 355, 495, 746
Hpy188I	TCNGA	3 cut(s)	24, 322, 612
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	4 cut(s)	80, 355, 495, 746
HpyCH4III	ACNGT	2 cut(s)	140, 426
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	80, 148, 179, 248, 269, 296, 500, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 233, 538
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	127, 588
HspAI	GCGC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	397
Kpn2I	TCCGGA	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	24, 418, 474, 619, 649
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	2 cut(s)	261, 452
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	561, 573, 669
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	5, 39
MalI	GATC	5 cut(s)	26, 420, 476, 621, 651
MboI	GATC	5 cut(s)	24, 418, 474, 619, 649
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	3 cut(s)	418, 619, 649
MhlI	GDGCHC	2 cut(s)	82, 554
MluCI	AATT	6 cut(s)	18, 63, 514, 545, 678, 708
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	250
MroI	TCCGGA	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	5 cut(s)	131, 278, 339, 430, 438
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	172, 233, 538
NdeII	GATC	5 cut(s)	24, 418, 474, 619, 649
NlaIII	CATG	2 cut(s)	127, 588
NlaIV	GGNNCC	8 cut(s)	398, 399, 420, 428, 552, 621, 651, 674
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	2 cut(s)	127, 588
PaeR7I	CTCGAG	1 cut(s)	44
PciI	ACATGT	2 cut(s)	123, 584
PfeI	GAWTC	3 cut(s)	607, 691, 754
PkrI	GCNGC	4 cut(s)	229, 276, 464, 467
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	397
PscI	ACATGT	2 cut(s)	123, 584
PsiI	TTATAA	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	8 cut(s)	398, 399, 420, 428, 552, 621, 651, 674
PspOMI	GGGCCC	1 cut(s)	550
PspPI	GGNCC	3 cut(s)	397, 550, 551
PspPPI	RGGWCCY	1 cut(s)	397
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	3 cut(s)	418, 619, 649
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	122, 674
RsaNI	GTAC	2 cut(s)	121, 673
RseI	CAYNNNNRTG	1 cut(s)	253
SatI	GCNGC	4 cut(s)	228, 275, 463, 466
Sau3AI	GATC	5 cut(s)	24, 418, 474, 619, 649
Sau96I	GGNCC	3 cut(s)	397, 550, 551
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	2 cut(s)	82, 554
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	177, 758
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	44, 700
SmoI	CTYRAG	2 cut(s)	44, 700
Sse9I	AATT	6 cut(s)	18, 63, 514, 545, 678, 708
SsiI	CCGC	4 cut(s)	90, 227, 301, 462
SspMI	CTAG	3 cut(s)	561, 573, 669
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	140, 426
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	45, 305
TasI	AATT	6 cut(s)	18, 63, 514, 545, 678, 708
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	2 cut(s)	230, 465
TfiI	GAWTC	3 cut(s)	607, 691, 754
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	274, 465
Tsp45I	GTSAC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	420
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	2 cut(s)	127, 588
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	3 cut(s)	561, 573, 669
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.