Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

14737329 .. 14738250

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGCCAATCAACAACGAAGTCCTTCACGAATTTCGCTTCTTTCGGGTGTACAAAGACGGTCGCATTCAAAAATTCTACGACACCCAAAAAACCCCACCGTCCAATGACCTGATCACGGGTGTCCAATCCAAGGACGTTATAATTCAACCCGAACCCGCCGTTTCCGCCCGTATTTTTCTACCCAAGATCCACGACCCCACCCAAAAACTCCCAGTCCTCTTCTTCCTCCACGGTGGCGCGTTTTGCATCGAGTCTGCCTTCTCTCCAATTTATCACAACCACGTCTCCCGTTTGGCCGCTGAAGCTCACGCAATTGCGGTGTCCGTTGAATATGGGTTGTTCCCGGAGCGACCCGTACCCGCTTGTTATGAAGACTCATGGGCTGCGCTCCAGTGGGTTGCGGCCCATGCTACCGTGGATGGACCCGAGTCGTGGTTAAACGAGTATGCTGACTTTGACCGAATTTTTATAGGCGGGGACAGTGGTGGAGCGAACTTATCACACAATTTGGCAGTTCGGGTCGGGTCGTCCCGGTTACCGGGCGTGAAGATTGCCGGGGTGGTTCTGGTGCACCCGTTCTTTGGGGGCTTGGAGGAGGATGATCAAATGTTTCTCTACACGTACCCAGAGAACGGTGGGTTGCAGGATCCTAAGCTGAGACCGCCCGCAGAGGATTTCACAAGGCTACCGTGCGGGAGGGTGTTGATTTTTTTTGCTGCGGACGACCATCTGAGAAAGGCGGGGCAAATGTATTATGATGACCTGAAAAAGAGTGAGTGGGGCGGGAGTGTTGAGGTGGTGGAGCATGAGGGTGAGTGCCACGTGTTTCACTTGTTCAAACCAGAATGTGAGAAGACTGGAGAGATGGTCAAAAAATTTGGATCCTTCATCAACCAAAATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

34.05

Weight (kDa)

5.61

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	5 cut(s)	184, 644, 657, 879, 892
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	4 cut(s)	32, 74, 465, 878
AcuI	CTGAAG	1 cut(s)	324
AcvI	CACGTG	1 cut(s)	826
AfaI	GTAC	3 cut(s)	53, 360, 626
AfiI	CCNNNNNNNGG	6 cut(s)	118, 133, 435, 541, 584, 635
AflIII	ACRYGT	2 cut(s)	621, 825
AgsI	TTSAA	4 cut(s)	71, 149, 332, 841
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	2 cut(s)	308, 658
AluI	AGCT	2 cut(s)	308, 658
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	2 cut(s)	292, 655
Alw44I	GTGCAC	1 cut(s)	572
AlwI	GGATC	5 cut(s)	184, 644, 657, 879, 892
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	297, 405
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	386, 719
ApoI	RAATTY	4 cut(s)	32, 74, 465, 878
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	242, 391
AspS9I	GGNCC	2 cut(s)	406, 425
AsuC2I	CCSGG	4 cut(s)	347, 535, 543, 559
AsuHPI	GGTGA	1 cut(s)	827
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	576
BamHI	GGATCC	2 cut(s)	649, 884
BbrPI	CACGTG	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	381, 863
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	373, 706
BccI	CCATC	3 cut(s)	416, 738, 862
BceAI	ACGGC	1 cut(s)	146
BclI	TGATCA	2 cut(s)	114, 604
BcnI	CCSGG	4 cut(s)	347, 535, 543, 559
BcoDI	GTCTC	2 cut(s)	292, 655
BisI	GCNGC	4 cut(s)	300, 387, 405, 720
BlsI	GCNGC	4 cut(s)	301, 388, 406, 721
Bme1390I	CCNGG	4 cut(s)	347, 535, 543, 559
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	406, 425
BmiI	GGNNCC	4 cut(s)	6, 427, 651, 886
BmrFI	CCNGG	4 cut(s)	347, 535, 543, 559
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	209
BoxI	GACNNNNGTC	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	381, 863
BpmI	CTGGAG	2 cut(s)	377, 882
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	4 cut(s)	347, 535, 543, 559
BsaAI	YACGTR	2 cut(s)	624, 826
BsaI	GGTCTC	1 cut(s)	655
BsaJI	CCNNGG	4 cut(s)	132, 232, 417, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 855, 885
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 133, 435, 541, 584, 635
Bse1I	ACTGG	3 cut(s)	215, 394, 865
BseDI	CCNNGG	4 cut(s)	132, 232, 417, 558
BseGI	GGATG	2 cut(s)	427, 607
BseLI	CCNNNNNNNGG	6 cut(s)	118, 133, 435, 541, 584, 635
BseMII	CTCAG	2 cut(s)	650, 725
BseNI	ACTGG	3 cut(s)	215, 394, 865
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	373, 706
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	299, 407
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	4 cut(s)	347, 535, 542, 558
BslFI	GGGAC	2 cut(s)	494, 517
BslI	CCNNNNNNNGG	6 cut(s)	118, 133, 435, 541, 584, 635
BsmAI	GTCTC	2 cut(s)	292, 655
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	494, 517
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	299, 407
Bso31I	GGTCTC	1 cut(s)	655
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	114, 189, 604, 649, 884
BspANI	GGCC	2 cut(s)	299, 407
BspCNI	CTCAG	2 cut(s)	651, 726
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	4 cut(s)	6, 427, 651, 886
BspPI	GGATC	5 cut(s)	184, 644, 657, 879, 892
BspTNI	GGTCTC	1 cut(s)	655
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	215, 394, 865
BssECI	CCNNGG	4 cut(s)	132, 232, 417, 558
BssMI	GATC	5 cut(s)	114, 189, 604, 649, 884
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	7 cut(s)	62, 102, 236, 418, 485, 638, 693
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	51
BstBAI	YACGTR	2 cut(s)	624, 826
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	654, 659, 734
BstDSI	CCRYGG	2 cut(s)	232, 417
BstEII	GGTNACC	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	427, 607
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	242, 391
BstKTI	GATC	5 cut(s)	117, 192, 607, 652, 887
BstMAI	GTCTC	2 cut(s)	292, 655
BstMBI	GATC	5 cut(s)	114, 189, 604, 649, 884
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 246, 305, 410, 664
BstPAI	GACNNNNGTC	1 cut(s)	430
BstPI	GGTNACC	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	345, 533, 541, 557
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	373, 706
BstV2I	GAAGAC	2 cut(s)	381, 863
BstX2I	RGATCY	3 cut(s)	189, 649, 884
BstYI	RGATCY	3 cut(s)	189, 649, 884
BsuRI	GGCC	2 cut(s)	299, 407
BtgI	CCRYGG	2 cut(s)	232, 417
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	427, 607
BtsIMutI	CAGTG	2 cut(s)	401, 490
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	2 cut(s)	242, 391
Cfr13I	GGNCC	2 cut(s)	406, 425
Csp6I	GTAC	3 cut(s)	52, 359, 625
CviAII	CATG	3 cut(s)	381, 410, 809
CviJI	RGCY	8 cut(s)	7, 299, 308, 386, 407, 591, 658, 688
CviKI_1	RGCY	8 cut(s)	7, 299, 308, 386, 407, 591, 658, 688
CviQI	GTAC	3 cut(s)	52, 359, 625
DdeI	CTNAG	3 cut(s)	654, 659, 734
DpnI	GATC	5 cut(s)	116, 191, 606, 651, 886
DpnII	GATC	5 cut(s)	114, 189, 604, 649, 884
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	826
Eco88I	CYCGRG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	3 cut(s)	384, 413, 812
FaiI	YATR	9 cut(s)	143, 336, 372, 382, 411, 450, 473, 759, 810
FaqI	GGGAC	2 cut(s)	494, 517
FatI	CATG	3 cut(s)	380, 409, 808
FauI	CCCGC	7 cut(s)	166, 370, 470, 676, 689, 736, 779
FbaI	TGATCA	2 cut(s)	114, 604
Fnu4HI	GCNGC	4 cut(s)	300, 387, 405, 720
FokI	GGATG	2 cut(s)	434, 614
Fsp4HI	GCNGC	4 cut(s)	300, 387, 405, 720
GlaI	GCGC	2 cut(s)	241, 390
GluI	GCNGC	4 cut(s)	300, 387, 405, 720
GsuI	CTGGAG	2 cut(s)	377, 882
HaeIII	GGCC	2 cut(s)	299, 407
HapII	CCGG	4 cut(s)	347, 535, 542, 558
HhaI	GCGC	2 cut(s)	242, 391
Hin1II	CATG	3 cut(s)	384, 413, 812
Hin6I	GCGC	2 cut(s)	240, 389
HinP1I	GCGC	2 cut(s)	240, 389
HinfI	GANTC	3 cut(s)	254, 377, 431
HpaII	CCGG	4 cut(s)	347, 535, 542, 558
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	2 cut(s)	52, 574
Hpy188I	TCNGA	1 cut(s)	735
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	52, 574
HpyAV	CCTTC	3 cut(s)	35, 271, 898
HpyCH4III	ACNGT	7 cut(s)	62, 102, 236, 418, 485, 638, 693
HpyCH4IV	ACGT	4 cut(s)	138, 285, 623, 825
HpyCH4V	TGCA	3 cut(s)	249, 574, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 246, 305, 410, 664
HpyF3I	CTNAG	3 cut(s)	654, 659, 734
HpySE526I	ACGT	4 cut(s)	138, 285, 623, 825
Hsp92II	CATG	3 cut(s)	384, 413, 812
HspAI	GCGC	2 cut(s)	240, 389
Ksp22I	TGATCA	2 cut(s)	114, 604
Kzo9I	GATC	5 cut(s)	114, 189, 604, 649, 884
LmnI	GCTCC	5 cut(s)	4, 349, 396, 491, 805
Lsp1109I	GCAGC	2 cut(s)	373, 706
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	4 cut(s)	138, 285, 623, 825
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	5 cut(s)	116, 191, 606, 651, 886
MboI	GATC	5 cut(s)	114, 189, 604, 649, 884
MboII	GAAGA	5 cut(s)	214, 217, 386, 562, 868
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	3 cut(s)	189, 649, 884
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	8 cut(s)	32, 74, 144, 270, 315, 465, 508, 878
MlyI	GAGTC	3 cut(s)	263, 371, 440
MnlI	CCTC	8 cut(s)	230, 239, 589, 592, 667, 693, 790, 805
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	4 cut(s)	347, 535, 542, 558
MspR9I	CCNGG	4 cut(s)	347, 535, 543, 559
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	66
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	167, 246, 305, 410, 664
NciI	CCSGG	4 cut(s)	347, 535, 543, 559
NdeII	GATC	5 cut(s)	114, 189, 604, 649, 884
NlaIII	CATG	3 cut(s)	384, 413, 812
NlaIV	GGNNCC	4 cut(s)	6, 427, 651, 886
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	301, 388, 406, 721
PleI	GAGTC	3 cut(s)	262, 371, 439
PmaCI	CACGTG	1 cut(s)	826
PmlI	CACGTG	1 cut(s)	826
PpsI	GAGTC	3 cut(s)	262, 371, 439
Ppu21I	YACGTR	2 cut(s)	624, 826
PshAI	GACNNNNGTC	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	6, 427, 651, 886
PspPI	GGNCC	2 cut(s)	406, 425
PsuI	RGATCY	3 cut(s)	189, 649, 884
RsaI	GTAC	3 cut(s)	53, 360, 626
RsaNI	GTAC	3 cut(s)	52, 359, 625
RseI	CAYNNNNRTG	1 cut(s)	813
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	4 cut(s)	300, 387, 405, 720
Sau3AI	GATC	5 cut(s)	114, 189, 604, 649, 884
Sau96I	GGNCC	2 cut(s)	406, 425
SchI	GAGTC	3 cut(s)	263, 371, 440
ScrFI	CCNGG	4 cut(s)	347, 535, 543, 559
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	9 cut(s)	114, 141, 288, 310, 626, 660, 768, 801, 828
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	813
Sse9I	AATT	8 cut(s)	32, 74, 144, 270, 315, 465, 508, 878
StyD4I	CCNGG	4 cut(s)	345, 533, 541, 557
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	7 cut(s)	62, 102, 236, 418, 485, 638, 693
TaiI	ACGT	4 cut(s)	141, 288, 626, 828
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	8 cut(s)	32, 74, 144, 270, 315, 465, 508, 878
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	2 cut(s)	302, 407
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	401, 490
TseI	GCWGC	2 cut(s)	386, 719
TspDTI	ATGAA	2 cut(s)	387, 880
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	401, 490
VneI	GTGCAC	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	4 cut(s)	32, 74, 465, 878
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.