Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

14738912 .. 14740247

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAAATGGAGCCAACCAGCAATGAAATCGATCGTGAATTTCGATTCTTCAGGACATACAAAAATGGTCAAGTCGAAAAGTTCTACAGTACCCATAAAATCCCACCTTCTAACAACCCCGTCACCGGGGTCCAATCCAAAGACATCATAATCTCACCCGAACCCGCTATTTCCGCCCGTATCTTCCTACCCAAGATCCATGATCCGACCCGGAAACTCCCCGTCCTCTTCTACATCCACGGCGGCGGGTTTTGCTTCGAGTCCGCCTTTTCCCCGCTCTACCACAACCACGTTGCCTCACTGGTCACTGAAGCCCGAGTTATTGCGGTGTCTGTCGAATACGGGTTGTATCCGGATCGACCCATACCCGCTTGCTACGAAGATTCATGGGCCGCTCTCAAATGGGTCGTGTCCCATTCGGCCAGGAACGGACCTGAGCCATGGTTGAACGAGTACGCTGACTTTGACCGGGTTTTTATAAGTGGGGACAGCGCTGGAGCGAACATATCGCACAATTTGGCGGTTCGGGTCGGGCCTGATGGGTTTTCGGGTGTGAAAGTTAACGGGATTGTTCTGGTGCATCCGTTCTTTGGGGGTCTGGAGGAGGATGATGAAATGTGGCTTTACATGTGTCCGGAGAACGGTGGGTTGCAGGATCGTAGGCTGAAACCGCCCGCAGAGGATCTGGCAAGGATTGGGTGTGGGAGGGTGTTGATATTTTTTGCTGCTGAAGACCATCTGAGGGAGGTGGGCCAGCGGTACTATGATGAGCTGGCGAAGAGTGAGTGGGGTGGGAGCGTTGAGGTGGTGGAGCATGAAGGTGAGAGCCACGTGTTTCATCTGATGAAGCCTGATTCTGAGAAGGCTACAAATTTGATCAAGAAATTTGGTTCCTTCATTAACCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

34.12

Weight (kDa)

5.65

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AccBSI	CCGCTC	2 cut(s)	277, 395
AccIII	TCCGGA	2 cut(s)	352, 634
AclWI	GGATC	5 cut(s)	190, 197, 363, 663, 690
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	3 cut(s)	38, 871, 884
AcuI	CTGAAG	3 cut(s)	34, 330, 750
AcvI	CACGTG	1 cut(s)	832
AfaI	GTAC	3 cut(s)	91, 455, 761
AfeI	AGCGCT	1 cut(s)	493
AfiI	CCNNNNNNNGG	5 cut(s)	125, 126, 590, 641, 742
AflIII	ACRYGT	2 cut(s)	627, 831
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	1 cut(s)	772
AluI	AGCT	1 cut(s)	772
AlwI	GGATC	5 cut(s)	190, 197, 363, 663, 690
Ama87I	CYCGRG	1 cut(s)	315
Aor13HI	TCCGGA	2 cut(s)	352, 634
Aor51HI	AGCGCT	1 cut(s)	493
AoxI	GGCC	4 cut(s)	390, 420, 533, 751
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	3 cut(s)	38, 871, 884
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	5 cut(s)	130, 390, 431, 533, 751
AsuC2I	CCSGG	3 cut(s)	127, 211, 470
AsuHPI	GGTGA	3 cut(s)	115, 147, 833
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	130, 431
BbrPI	CACGTG	1 cut(s)	832
BbsI	GAAGAC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	2 cut(s)	533, 744
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	876
BcnI	CCSGG	3 cut(s)	127, 211, 470
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	244, 393, 726
BlsI	GCNGC	3 cut(s)	245, 394, 727
Bme1390I	CCNGG	4 cut(s)	127, 211, 424, 470
Bme18I	GGWCC	2 cut(s)	130, 431
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	5 cut(s)	130, 390, 431, 533, 751
BmiI	GGNNCC	3 cut(s)	12, 131, 892
BmrFI	CCNGG	4 cut(s)	127, 211, 424, 470
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	2 cut(s)	516, 620
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	3 cut(s)	127, 211, 470
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	126, 238, 440
BsaWI	WCCGGW	2 cut(s)	352, 634
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 126, 590, 641, 742
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	28
BseAI	TCCGGA	2 cut(s)	352, 634
BseBI	CCWGG	1 cut(s)	424
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	126, 238, 440
BseGI	GGATG	3 cut(s)	234, 580, 613
BseLI	CCNNNNNNNGG	5 cut(s)	125, 126, 590, 641, 742
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	426, 731, 849
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	4 cut(s)	392, 422, 535, 753
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	5 cut(s)	126, 211, 353, 469, 635
BslFI	GGGAC	2 cut(s)	397, 500
BslI	CCNNNNNNNGG	5 cut(s)	125, 126, 590, 641, 742
BsmFI	GGGAC	2 cut(s)	397, 500
BsnI	GGCC	4 cut(s)	392, 422, 535, 753
BsoBI	CYCGRG	1 cut(s)	315
Bsp13I	TCCGGA	2 cut(s)	352, 634
Bsp143I	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
Bsp19I	CCATGG	1 cut(s)	440
BspANI	GGCC	4 cut(s)	392, 422, 535, 753
BspCNI	CTCAG	3 cut(s)	427, 732, 850
BspDI	ATCGAT	1 cut(s)	30
BspEI	TCCGGA	2 cut(s)	352, 634
BspLI	GGNNCC	3 cut(s)	12, 131, 892
BspPI	GGATC	5 cut(s)	190, 197, 363, 663, 690
BsrBI	CCGCTC	2 cut(s)	277, 395
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	126, 238, 440
BssMI	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	89, 644
Bst6I	CTCTTC	2 cut(s)	233, 773
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	373, 675, 755, 774
BstDEI	CTNAG	3 cut(s)	435, 740, 858
BstDSI	CCRYGG	2 cut(s)	238, 440
BstF5I	GGATG	3 cut(s)	234, 580, 613
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	7 cut(s)	34, 198, 205, 358, 658, 685, 879
BstMBI	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 252, 670
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	4 cut(s)	125, 209, 422, 468
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	2 cut(s)	195, 682
BstYI	RGATCY	2 cut(s)	195, 682
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	392, 422, 535, 753
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	238, 440
BtsCI	GGATG	3 cut(s)	234, 580, 613
BtsIMutI	CAGTG	2 cut(s)	299, 306
Cac8I	GCNNGC	4 cut(s)	373, 675, 755, 774
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	5 cut(s)	130, 390, 431, 533, 751
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	90, 454, 760
CviAII	CATG	5 cut(s)	200, 387, 441, 628, 815
CviQI	GTAC	3 cut(s)	90, 454, 760
DdeI	CTNAG	3 cut(s)	435, 740, 858
DpnI	GATC	7 cut(s)	33, 197, 204, 357, 657, 684, 878
DpnII	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	233, 773
EarI	CTCTTC	2 cut(s)	233, 773
EciI	GGCGGA	2 cut(s)	163, 253
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	130, 431
Eco47III	AGCGCT	1 cut(s)	493
Eco57I	CTGAAG	3 cut(s)	34, 330, 750
Eco72I	CACGTG	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	5 cut(s)	203, 390, 444, 631, 818
FaqI	GGGAC	2 cut(s)	397, 500
FatI	CATG	5 cut(s)	199, 386, 440, 627, 814
FauI	CCCGC	5 cut(s)	172, 239, 282, 376, 682
FbaI	TGATCA	1 cut(s)	876
Fnu4HI	GCNGC	3 cut(s)	244, 393, 726
FokI	GGATG	3 cut(s)	221, 567, 620
Fsp4HI	GCNGC	3 cut(s)	244, 393, 726
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	3 cut(s)	244, 393, 726
GsuI	CTGGAG	2 cut(s)	516, 620
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	392, 422, 535, 753
HapII	CCGG	5 cut(s)	126, 211, 353, 469, 635
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	203, 390, 444, 631, 818
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	4 cut(s)	45, 260, 383, 854
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	5 cut(s)	126, 211, 353, 469, 635
HphI	GGTGA	3 cut(s)	115, 147, 833
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	207, 741, 843, 859
Hpy188III	TCNNGA	6 cut(s)	35, 52, 353, 599, 635, 880
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	4 cut(s)	117, 812, 856, 904
HpyCH4III	ACNGT	2 cut(s)	89, 644
HpyCH4IV	ACGT	2 cut(s)	291, 831
HpyCH4V	TGCA	2 cut(s)	580, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 252, 670
HpyF3I	CTNAG	3 cut(s)	435, 740, 858
HpySE526I	ACGT	2 cut(s)	291, 831
Hsp92II	CATG	5 cut(s)	203, 390, 444, 631, 818
HspAI	GCGC	1 cut(s)	492
Kpn2I	TCCGGA	2 cut(s)	352, 634
Ksp22I	TGATCA	1 cut(s)	876
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
LmnI	GCTCC	4 cut(s)	10, 497, 795, 811
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	2 cut(s)	291, 831
MaeIII	GTNAC	2 cut(s)	121, 304
MalI	GATC	7 cut(s)	33, 197, 204, 357, 657, 684, 878
MbiI	CCGCTC	2 cut(s)	277, 395
MboI	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
MboII	GAAGA	6 cut(s)	40, 175, 220, 392, 743, 790
MflI	RGATCY	2 cut(s)	195, 682
MluCI	AATT	5 cut(s)	38, 514, 871, 884, 907
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	236, 307, 595, 598, 673, 699, 735, 739, 796
MroI	TCCGGA	2 cut(s)	352, 634
MseI	TTAA	2 cut(s)	561, 900
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	757
MspI	CCGG	5 cut(s)	126, 211, 353, 469, 635
MspR9I	CCNGG	4 cut(s)	127, 211, 424, 470
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	173, 252, 670
NciI	CCSGG	3 cut(s)	127, 211, 470
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
NlaIII	CATG	5 cut(s)	203, 390, 444, 631, 818
NlaIV	GGNNCC	3 cut(s)	12, 131, 892
NmuCI	GTSAC	2 cut(s)	121, 304
NspI	RCATGY	1 cut(s)	631
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	45, 383, 854
PkrI	GCNGC	3 cut(s)	245, 394, 727
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	268
PmaCI	CACGTG	1 cut(s)	832
PmlI	CACGTG	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	832
PscI	ACATGT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	422
PspCI	CACGTG	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	12, 131, 892
PspPI	GGNCC	5 cut(s)	130, 390, 431, 533, 751
PsuI	RGATCY	2 cut(s)	195, 682
PvuI	CGATCG	1 cut(s)	34
RsaI	GTAC	3 cut(s)	91, 455, 761
RsaNI	GTAC	3 cut(s)	90, 454, 760
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	2 cut(s)	561, 900
SatI	GCNGC	3 cut(s)	244, 393, 726
Sau3AI	GATC	7 cut(s)	31, 195, 202, 355, 655, 682, 876
Sau96I	GGNCC	5 cut(s)	130, 390, 431, 533, 751
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	4 cut(s)	127, 211, 424, 470
SetI	ASST	8 cut(s)	109, 294, 436, 750, 774, 807, 823, 834
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	130, 431
SmiMI	CAYNNNNRTG	1 cut(s)	819
Sse9I	AATT	5 cut(s)	38, 514, 871, 884, 907
StyD4I	CCNGG	4 cut(s)	125, 209, 422, 468
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	89, 644
TaiI	ACGT	2 cut(s)	294, 834
TaqI	TCGA	6 cut(s)	30, 43, 75, 258, 336, 358
TasI	AATT	5 cut(s)	38, 514, 871, 884, 907
TauI	GCSGC	2 cut(s)	246, 395
TfiI	GAWTC	3 cut(s)	45, 383, 854
Tru1I	TTAA	2 cut(s)	561, 900
Tru9I	TTAA	2 cut(s)	561, 900
TscAI	CASTG	2 cut(s)	306, 313
TseFI	GTSAC	2 cut(s)	121, 304
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	121, 304
TspDTI	ATGAA	8 cut(s)	17, 39, 375, 627, 827, 831, 860, 886
TspGWI	ACGGA	2 cut(s)	444, 573
TspRI	CASTG	2 cut(s)	306, 313
VpaK11BI	GGWCC	2 cut(s)	130, 431
XapI	RAATTY	3 cut(s)	38, 871, 884
XceI	RCATGY	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.