Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8322479.1

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 632

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8322479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 631 bp

atggagccaactaacaacgaagtcgcacacgagtttcgcttcttcaaggcttacaaagatggccgcgtcgaaatattctacaacacccagaaagtcccaccttccgctgactccgtcaccggcgtccaagccaaggacgtcatcatttcacaagaacccgccgtttctgcccgcatcttcttacccaagatccacgacccgacccaaaaactgcccatcctgttttacatccacggcggtgggttttgcttcgagtccgccttctctcccatgttccacaagcacctcacctccttagctgccgaagccaacgccatcgccgtctccgtcgaatacgggctgtttccggatcggcccatacccgcttgctacgacgacacctgggctgccctcaaatgggtccagtcccactcgaaccgagacggacccgaccagtggatgaaccagtacgccgacttcgaccgggttttcttatgcggcgacagtggcggagccaatatgtgccacaacctggctgttcgggtcggatcagacgggttacccggagtgaaagtggcgggaatggttatggtgcatcccttttttggtgggttggctgtggacgacgaaatgtggctgtacatgtgtccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

210

Amino Acids

23.32

Weight (kDa)

5.38

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccII	CGCG	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	346
AclWI	GGATC	3 cut(s)	184, 357, 535
AcoI	YGGCCR	1 cut(s)	61
AcyI	GRCGYC	2 cut(s)	123, 138
AfaI	GTAC	2 cut(s)	449, 620
AfiI	CCNNNNNNNGG	6 cut(s)	133, 396, 397, 435, 511, 584
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	380, 510
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	328, 414
AlwI	GGATC	3 cut(s)	184, 357, 535
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	61, 353
ApeKI	GCWGC	2 cut(s)	299, 386
AspS9I	GGNCC	3 cut(s)	354, 400, 425
AsuC2I	CCSGG	2 cut(s)	464, 543
AsuHPI	GGTGA	2 cut(s)	109, 280
AvaII	GGWCC	2 cut(s)	400, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BauI	CACGAG	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	286, 373
BccI	CCATC	3 cut(s)	53, 224, 323
BceAI	ACGGC	3 cut(s)	146, 250, 305
BciT130I	CCWGG	2 cut(s)	382, 512
BcnI	CCSGG	2 cut(s)	464, 543
BcoDI	GTCTC	2 cut(s)	328, 414
BisI	GCNGC	4 cut(s)	64, 300, 387, 478
BlsI	GCNGC	4 cut(s)	65, 301, 388, 479
Bme1390I	CCNGG	4 cut(s)	382, 464, 512, 543
Bme18I	GGWCC	2 cut(s)	400, 425
BmgT120I	GGNCC	3 cut(s)	354, 400, 425
BmiI	GGNNCC	4 cut(s)	6, 401, 427, 493
BmrFI	CCNGG	4 cut(s)	382, 464, 512, 543
BmsI	GCATC	2 cut(s)	183, 583
Bpu10I	CCTNAGC	1 cut(s)	295
BpuMI	CCSGG	2 cut(s)	464, 543
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaJI	CCNNGG	3 cut(s)	132, 232, 381
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 537, 567
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 396, 397, 435, 511, 584
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	403, 433, 445
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	382, 512
BseDI	CCNNGG	3 cut(s)	132, 232, 381
BseGI	GGATG	4 cut(s)	216, 228, 444, 574
BseLI	CCNNNNNNNGG	6 cut(s)	133, 396, 397, 435, 511, 584
BseNI	ACTGG	3 cut(s)	403, 433, 445
BseXI	GCAGC	2 cut(s)	286, 373
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	63, 355
BsiEI	CGRYCG	1 cut(s)	463
BsiSI	CCGG	5 cut(s)	120, 347, 463, 543, 629
BslFI	GGGAC	2 cut(s)	80, 391
BslI	CCNNNNNNNGG	6 cut(s)	133, 396, 397, 435, 511, 584
BsmAI	GTCTC	2 cut(s)	328, 414
BsmBI	CGTCTC	2 cut(s)	328, 414
BsmFI	GGGAC	2 cut(s)	80, 391
BsnI	GGCC	2 cut(s)	63, 355
Bsp13I	TCCGGA	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	189, 349, 527
BspANI	GGCC	2 cut(s)	63, 355
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	6, 401, 427, 493
BspPI	GGATC	3 cut(s)	184, 357, 535
BsrFI	RCCGGY	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	403, 433, 445
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	132, 232, 381
BssMI	GATC	3 cut(s)	189, 349, 527
BssNI	GRCGYC	2 cut(s)	123, 138
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	382, 512
Bst4CI	ACNGT	1 cut(s)	485
BstACI	GRCGYC	2 cut(s)	123, 138
BstAUI	TGTACA	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	172, 367
BstDEI	CTNAG	1 cut(s)	295
BstDSI	CCRYGG	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	537
BstF5I	GGATG	4 cut(s)	216, 228, 444, 574
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	192, 352, 530
BstMAI	GTCTC	2 cut(s)	328, 414
BstMBI	GATC	3 cut(s)	189, 349, 527
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 305, 486
BstNI	CCWGG	2 cut(s)	382, 512
BstNSI	RCATGY	1 cut(s)	625
BstPI	GGTNACC	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	380, 462, 510, 541
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	286, 373
BstX2I	RGATCY	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	63, 355
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	216, 228, 444, 574
BtsIMutI	CAGTG	2 cut(s)	440, 490
Cac8I	GCNNGC	2 cut(s)	172, 367
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	354, 400, 425
CseI	GACGC	2 cut(s)	55, 112
Csp6I	GTAC	2 cut(s)	448, 619
CviAII	CATG	2 cut(s)	271, 622
CviQI	GTAC	2 cut(s)	448, 619
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	3 cut(s)	191, 351, 529
DpnII	GATC	3 cut(s)	189, 349, 527
EaeI	YGGCCR	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	247, 504
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	400, 425
Eco91I	GGTNACC	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	380, 510
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	2 cut(s)	328, 414
FaeI	CATG	2 cut(s)	274, 625
FaiI	YATR	6 cut(s)	272, 359, 475, 500, 569, 623
FaqI	GGGAC	2 cut(s)	80, 391
FatI	CATG	2 cut(s)	270, 621
FauI	CCCGC	4 cut(s)	166, 179, 370, 550
Fnu4HI	GCNGC	4 cut(s)	64, 300, 387, 478
FokI	GGATG	4 cut(s)	203, 215, 451, 561
Fsp4HI	GCNGC	4 cut(s)	64, 300, 387, 478
GluI	GCNGC	4 cut(s)	64, 300, 387, 478
HaeIII	GGCC	2 cut(s)	63, 355
HapII	CCGG	5 cut(s)	120, 347, 463, 543, 629
HgaI	GACGC	2 cut(s)	55, 112
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	2 cut(s)	274, 625
HinfI	GANTC	2 cut(s)	110, 254
HpaII	CCGG	5 cut(s)	120, 347, 463, 543, 629
HphI	GGTGA	2 cut(s)	109, 280
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	2 cut(s)	527, 532
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	4 cut(s)	71, 332, 377, 608
HpyAV	CCTTC	2 cut(s)	111, 271
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 305, 486
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	2 cut(s)	274, 625
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	189, 349, 527
LmnI	GCTCC	2 cut(s)	4, 491
Lsp1109I	GCAGC	2 cut(s)	286, 373
LweI	GCATC	2 cut(s)	183, 583
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	115, 537
MalI	GATC	3 cut(s)	191, 351, 529
MboI	GATC	3 cut(s)	189, 349, 527
MboII	GAAGA	2 cut(s)	34, 169
MflI	RGATCY	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	104, 263
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	296, 301, 401
MroI	TCCGGA	1 cut(s)	346
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	5 cut(s)	120, 347, 463, 543, 629
MspR9I	CCNGG	4 cut(s)	382, 464, 512, 543
MvaI	CCWGG	2 cut(s)	382, 512
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	167, 305, 486
NciI	CCSGG	2 cut(s)	464, 543
NdeII	GATC	3 cut(s)	189, 349, 527
NlaIII	CATG	2 cut(s)	274, 625
NlaIV	GGNNCC	4 cut(s)	6, 401, 427, 493
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	625
OliI	CACNNNNGTG	1 cut(s)	237
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 324, 456
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	65, 301, 388, 479
PleI	GAGTC	2 cut(s)	104, 262
PpsI	GAGTC	2 cut(s)	104, 262
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	380, 510
PspEI	GGTNACC	1 cut(s)	537
PspGI	CCWGG	2 cut(s)	380, 510
PspN4I	GGNNCC	4 cut(s)	6, 401, 427, 493
PspPI	GGNCC	3 cut(s)	354, 400, 425
PsuI	RGATCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	449, 620
RsaNI	GTAC	2 cut(s)	448, 619
RseI	CAYNNNNRTG	1 cut(s)	237
SatI	GCNGC	4 cut(s)	64, 300, 387, 478
Sau3AI	GATC	3 cut(s)	189, 349, 527
Sau96I	GGNCC	3 cut(s)	354, 400, 425
SchI	GAGTC	2 cut(s)	104, 263
ScrFI	CCNGG	4 cut(s)	382, 464, 512, 543
SetI	ASST	7 cut(s)	103, 141, 288, 293, 301, 383, 513
SfaNI	GCATC	2 cut(s)	183, 583
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	400, 425
SmiMI	CAYNNNNRTG	1 cut(s)	237
SspI	AATATT	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	380, 462, 510, 541
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	69, 252, 330, 413, 459
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	2 cut(s)	66, 480
TscAI	CASTG	2 cut(s)	440, 490
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	299, 386
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	3 cut(s)	103, 316, 438
TspRI	CASTG	2 cut(s)	440, 490
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	400, 425
XceI	RCATGY	1 cut(s)	625
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.