Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

77826888 .. 77829149

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0581100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGAGCTGCATTACACAAGTAACTTACTCAATTCTTATTCAGGGTGAACCAACTGCCAAGCTTACTCCCACTAGAGGTATTAGACAGGGTGATCCATTATCACCCTATCTATTTATTTTGTGTGCAGAAGGGCTGTCAGCTTTAATCTCTCAAGCTTTTCAGAACAATGTTATTGCGGGACTTAAAATGAGTCCAACAGCCCCAACTCTTCATCATCTATTCTTTGCAGATGATAGTTTCTTGTTTGGCACTGCTACAGATGGGGAATGCTACAAGTTTAAAGAAATTCTTGACACTTATGAACGTGCCCCAGGACAAAAGGTGAATTATCAGAAGAGTAGTATGGCATTCAGTAAGAATGTAGACATGGAGACACAAAACAGACTTGCGTCTATTGTAGCTGTTAAAAGAGTGGATGAACATGACAGATATTTGGGTTTACCCTTGAGAGTTGGCCGATCAAAGATGGCGATTTTTGCATACATCAAGGACAAATTAACAAAGAAACTTATTAACTGGAAGGCAAAGATCTTGAGTTGTGCAGGCAAGGAAATCTTAATCAAGGCAGTGGCACAAACGATGCCACTGTATGCCATGAACTGTTATCTCCTACCACAAGGGTTATGTGATGATATCCATAAGTTGTGTGCATCTTTCTTTTGGGGAGACACCGATGAGAAGAAAAAAATCCATTGGAGAAGTTGGGACAAGTTGTGTTTAACTAAGAAGGAAGGTGGTATGGGGTTCAAGAACCTGTATGCATATAATCTGGCAATGTTGGCCAAACAAGGATGGAGGCTAGTCACCAACCCTCAATCACTCATCGCCAGGTTGTTCAAAGCTCGATATTTTCCCAATAATTCTTTTTGGGAAGCGGATTTGGGAGATTCGCCATCCTTCTCATGGAGAAGCATTCTCAGTGGTAGACCAGTTTTGAAAGCTGGGATTCAGTGGAAAATTGGGGATGGTACTTCAGTGAGTATTTGGCATGACAAGTGGCTTCCAGTGCAGCAGCCAGTTCACCTCCCACAACCACCTCATACAGAGTTTCATGTTGTGGCTGATCTCATTAATAAGGAAACAAGGGAATGGATTCCTGCCTCGGTGTATGCCCTATTTCCTCATGACATAGCTGAGAAGATCTTGTGTATCCCACTTGGACGGCGCTCATGCTCTGATAGACTCATCTGGAGTCCAGAGAAGAAAGGTTTTTATTCTGTGAAATCTGCCTATTGGATAGCTAGAGCGCATGTCCTCCAAAATGTTCTCACATCTACGTCGCAGGGAGATCCTTTTAAAGAGCTTTGGCAGAAACTTTGGAAGGCAAAGGTTCCAGGAAAGGTGAGTATTTGCAACTGGAGAGCTTGCAACAACCTCTTGTCTACAAGGGAACGTTTAACAAAGAAGGGCTATACTGGCAGCACAGAGTGTTTGCTTTGCCATTTTCACATGGAGGACAACCATCATATCTTCTGTAAGTGTCCCATAGCCATGCAAATACTCTCTGCTCCTCCGTTTAATCTCCAACACACTTCGCTGCCTAATATGAGTTTTAAGGAATGGATGCTTGAAAGAGCACAACACCTCAAACCTGAAACCTTCGAGAAGCTCATGATGATTATTTGGGCTTTATGGAAAAACCGTAACAATGTGCTATGGGAAGGAAAGGCTCAATCTGTTCCTAATTTGGTTTTGGGTTGTTTTACATGGCTCACTGAGTTCCAGAAATCCAGAGGAACAGGTATATCCACTCAAGGATCGGTCCGGCCAAAGTGGAAACCACCAACGCAGGGTTTCAAATTGAATGTTGATGCAGCCTTCCTACCTAATCAGCATCAGGGTGGACTCGGGGGAGTATTGAGGGACTCGACAGGTCAGTTCAAAGCTGCTTTCTTTCAGCATGTTGACCATGCAGCTTCACCAAAGCAGTGTGAGCTGCTAGCCATTAGGGCGAGTTTGGATTTGTTATCCTCCTTAGATATACAAAATGTGTGTATTGAAAGTGACTGCATGGAAGCAGTCTACGAAGCAAACTGTACGAATTACGCTTTATTAGCTAATGGAGGTCTAGTGGATGATATTCAGGCAATGTGGCGTAGGCTGCAAGGGGTGACCATATGTCATACTCCGAGAACCTGTAATGCGGTGGCTCACCGCCTAGCAGCTTTAGGTTTTGAGGCTACTATAGGAGAAGTTTGGTTCGATTATGCTCCTCCTTGTATTATCGATGTACTACAGCACGATTGTGCCCAACTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

753

Amino Acids

85.15

Weight (kDa)

9.0

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	12 - 123	9.9e-08	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	405 - 499	4.6e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	602 - 722	2.5e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	363, 925, 1382, 2022
AciI	CCGC	4 cut(s)	176, 875, 2144, 2155
AclI	AACGTT	1 cut(s)	1393
AclWI	GGATC	3 cut(s)	86, 1283, 1765
AcoI	YGGCCR	3 cut(s)	454, 780, 1766
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	957
AdeI	CACNNNGTG	1 cut(s)	1428
AfaI	GTAC	3 cut(s)	970, 2038, 2232
AfiI	CCNNNNNNNGG	3 cut(s)	74, 903, 1790
AgsI	TTSAA	8 cut(s)	748, 838, 937, 1571, 1798, 1804, 1882, 2000
AhdI	GACNNNNNGTC	1 cut(s)	2118
AjnI	CCWGG	3 cut(s)	310, 827, 1333
AleI	CACNNNNGTG	1 cut(s)	2244
Alw21I	GWGCWC	1 cut(s)	1579
Alw26I	GTCTC	2 cut(s)	365, 660
AlwI	GGATC	3 cut(s)	86, 1283, 1765
Ama87I	CYCGRG	1 cut(s)	1847
AoxI	GGCC	3 cut(s)	454, 780, 1766
ApoI	RAATTY	1 cut(s)	285
AseI	ATTAAT	1 cut(s)	1071
Asp700I	GAANNNNTTC	1 cut(s)	1092
AspLEI	GCGC	2 cut(s)	1167, 1249
AspS9I	GGNCC	1 cut(s)	1762
AsuNHI	GCTAGC	1 cut(s)	1939
AvaI	CYCGRG	1 cut(s)	1847
AvaII	GGWCC	1 cut(s)	1762
BaeGI	GKGCMC	2 cut(s)	310, 2251
BaeI	ACNNNNGTAYC	2 cut(s)	960, 993
BalI	TGGCCA	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	1579
BccI	CCATC	6 cut(s)	254, 460, 786, 901, 959, 1470
BceAI	ACGGC	1 cut(s)	1178
BciT130I	CCWGG	3 cut(s)	312, 829, 1335
BciVI	GTATCC	1 cut(s)	1160
BcoDI	GTCTC	2 cut(s)	365, 660
BfaI	CTAG	6 cut(s)	72, 800, 1242, 1940, 2069, 2159
BfmI	CTRYAG	3 cut(s)	255, 2184, 2234
BfoI	RGCGCY	1 cut(s)	1168
BfuI	GTATCC	1 cut(s)	1160
BglI	GCCNNNNNGGC	1 cut(s)	1949
BglII	AGATCT	2 cut(s)	528, 1140
Bme1390I	CCNGG	3 cut(s)	312, 829, 1335
Bme18I	GGWCC	1 cut(s)	1762
BmeRI	GACNNNNNGTC	1 cut(s)	2118
BmeT110I	CYCGRG	1 cut(s)	1847
BmgT120I	GGNCC	1 cut(s)	1762
BmiI	GGNNCC	1 cut(s)	1332
BmrFI	CCNGG	3 cut(s)	312, 829, 1335
BmsI	GCATC	5 cut(s)	570, 659, 1554, 1801, 1843
BmtI	GCTAGC	1 cut(s)	1943
BoxI	GACNNNNGTC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	1210, 1378
BpuEI	CTTGAG	4 cut(s)	135, 466, 553, 1737
Bsa29I	ATCGAT	1 cut(s)	2226
BsaJI	CCNNGG	2 cut(s)	310, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	2055, 2085
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 903, 1790
Bse1I	ACTGG	6 cut(s)	521, 929, 1004, 1016, 1361, 1420
Bse3DI	GCAATG	2 cut(s)	780, 2094
BseBI	CCWGG	3 cut(s)	312, 829, 1335
BseCI	ATCGAT	1 cut(s)	2226
BseDI	CCNNGG	2 cut(s)	310, 1101
BseGI	GGATG	6 cut(s)	421, 797, 893, 970, 1569, 2080
BseLI	CCNNNNNNNGG	3 cut(s)	74, 903, 1790
BseMI	GCAATG	2 cut(s)	780, 2094
BseMII	CTCAG	3 cut(s)	931, 1125, 1707
BseNI	ACTGG	6 cut(s)	521, 929, 1004, 1016, 1361, 1420
BseRI	GAGGAG	2 cut(s)	1500, 2202
BseSI	GKGCMC	2 cut(s)	310, 2251
BseYI	CCCAGC	1 cut(s)	941
BsgI	GTGCAG	3 cut(s)	144, 561, 1028
BshFI	GGCC	3 cut(s)	456, 782, 1768
BshVI	ATCGAT	1 cut(s)	2226
BsiHKAI	GWGCWC	1 cut(s)	1579
BsiHKCI	CYCGRG	1 cut(s)	1847
BsiSI	CCGG	1 cut(s)	1765
BslFI	GGGAC	4 cut(s)	192, 719, 1467, 1877
BslI	CCNNNNNNNGG	3 cut(s)	74, 903, 1790
BsmAI	GTCTC	2 cut(s)	365, 660
BsmFI	GGGAC	4 cut(s)	192, 719, 1467, 1877
BsmI	GAATGC	3 cut(s)	272, 347, 912
BsnI	GGCC	3 cut(s)	456, 782, 1768
BsoBI	CYCGRG	1 cut(s)	1847
Bsp1286I	GDGCHC	3 cut(s)	310, 1579, 2251
Bsp143I	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
BspACI	CCGC	4 cut(s)	176, 875, 2144, 2155
BspANI	GGCC	3 cut(s)	456, 782, 1768
BspCNI	CTCAG	3 cut(s)	930, 1126, 1708
BspDI	ATCGAT	1 cut(s)	2226
BspHI	TCATGA	2 cut(s)	1123, 1611
BspLI	GGNNCC	1 cut(s)	1332
BspOI	GCTAGC	1 cut(s)	1943
BspPI	GGATC	3 cut(s)	86, 1283, 1765
BsrDI	GCAATG	2 cut(s)	780, 2094
BsrI	ACTGG	6 cut(s)	521, 929, 1004, 1016, 1361, 1420
BssECI	CCNNGG	2 cut(s)	310, 1101
BssMI	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
Bst2UI	CCWGG	3 cut(s)	312, 829, 1335
Bst4CI	ACNGT	4 cut(s)	588, 602, 1643, 2036
Bst6I	CTCTTC	2 cut(s)	213, 329
BstC8I	GCNNGC	3 cut(s)	544, 1366, 1941
BstDEI	CTNAG	5 cut(s)	723, 917, 1134, 1716, 1975
BstEII	GGTNACC	1 cut(s)	2110
BstF5I	GGATG	6 cut(s)	421, 797, 893, 970, 1569, 2080
BstH2I	RGCGCY	1 cut(s)	1168
BstHHI	GCGC	2 cut(s)	1167, 1249
BstKTI	GATC	7 cut(s)	94, 461, 531, 1066, 1143, 1291, 1760
BstMAI	GTCTC	2 cut(s)	365, 660
BstMBI	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
BstMWI	GCNNNNNNNGC	8 cut(s)	476, 779, 1006, 1416, 1933, 1949, 2054, 2101
BstNI	CCWGG	3 cut(s)	312, 829, 1335
BstNSI	RCATGY	2 cut(s)	1253, 1904
BstPAI	GACNNNNGTC	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	2110
BstSCI	CCNGG	3 cut(s)	310, 827, 1333
BstSFI	CTRYAG	3 cut(s)	255, 2184, 2234
BstSLI	GKGCMC	2 cut(s)	310, 2251
BstX2I	RGATCY	3 cut(s)	528, 1140, 1288
BstYI	RGATCY	3 cut(s)	528, 1140, 1288
Bsu15I	ATCGAT	1 cut(s)	2226
BsuI	GTATCC	1 cut(s)	1160
BsuRI	GGCC	3 cut(s)	456, 782, 1768
BsuTUI	ATCGAT	1 cut(s)	2226
BtgZI	GCGATG	1 cut(s)	808
BtsCI	GGATG	6 cut(s)	421, 797, 893, 970, 1569, 2080
BtsI	GCAGTG	3 cut(s)	249, 573, 1934
BtsIMutI	CAGTG	9 cut(s)	249, 573, 584, 925, 956, 981, 1011, 1713, 1934
Cac8I	GCNNGC	3 cut(s)	544, 1366, 1941
CciI	TCATGA	2 cut(s)	1123, 1611
CfoI	GCGC	2 cut(s)	1167, 1249
Cfr13I	GGNCC	1 cut(s)	1762
ClaI	ATCGAT	1 cut(s)	2226
CpoI	CGGWCCG	1 cut(s)	1762
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	3 cut(s)	969, 2037, 2231
CspI	CGGWCCG	1 cut(s)	1762
CviQI	GTAC	3 cut(s)	969, 2037, 2231
DdeI	CTNAG	5 cut(s)	723, 917, 1134, 1716, 1975
DpnI	GATC	7 cut(s)	93, 460, 530, 1065, 1142, 1290, 1759
DpnII	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
DraI	TTTAAA	2 cut(s)	280, 1297
DraIII	CACNNNGTG	1 cut(s)	1428
DriI	GACNNNNNGTC	1 cut(s)	2118
EaeI	YGGCCR	3 cut(s)	454, 780, 1766
Eam1104I	CTCTTC	2 cut(s)	213, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	2118
EarI	CTCTTC	2 cut(s)	213, 329
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	1762
Eco57I	CTGAAG	1 cut(s)	957
Eco88I	CYCGRG	1 cut(s)	1847
Eco91I	GGTNACC	1 cut(s)	2110
EcoO65I	GGTNACC	1 cut(s)	2110
EcoRII	CCWGG	3 cut(s)	310, 827, 1333
EcoRV	GATATC	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	763
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 539, 571
FaqI	GGGAC	4 cut(s)	192, 719, 1467, 1877
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	2117
FblI	GTMKAC	4 cut(s)	363, 925, 1382, 2022
FokI	GGATG	6 cut(s)	428, 804, 880, 977, 1576, 2087
FspBI	CTAG	6 cut(s)	72, 800, 1242, 1940, 2069, 2159
GlaI	GCGC	2 cut(s)	1166, 1248
GsaI	CCCAGC	1 cut(s)	945
GsuI	CTGGAG	2 cut(s)	1210, 1378
HaeII	RGCGCY	1 cut(s)	1168
HaeIII	GGCC	3 cut(s)	456, 782, 1768
HapII	CCGG	1 cut(s)	1765
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	2 cut(s)	1167, 1249
Hin6I	GCGC	2 cut(s)	1165, 1247
HinP1I	GCGC	2 cut(s)	1165, 1247
HincII	GTYRAC	1 cut(s)	1906
HindII	GTYRAC	1 cut(s)	1906
HindIII	AAGCTT	2 cut(s)	59, 153
HinfI	GANTC	8 cut(s)	190, 887, 946, 1093, 1182, 1192, 1845, 1865
HpaII	CCGG	1 cut(s)	1765
Hpy166II	GTNNAC	9 cut(s)	47, 364, 440, 926, 1021, 1383, 1844, 1906, 2023
Hpy188I	TCNGA	4 cut(s)	162, 333, 1177, 2130
Hpy8I	GTNNAC	9 cut(s)	47, 364, 440, 926, 1021, 1383, 1844, 1906, 2023
Hpy99I	CGWCG	1 cut(s)	1282
HpyCH4III	ACNGT	4 cut(s)	588, 602, 1643, 2036
HpyCH4IV	ACGT	3 cut(s)	304, 1277, 1393
HpyF10VI	GCNNNNNNNGC	8 cut(s)	476, 779, 1006, 1416, 1933, 1949, 2054, 2101
HpyF3I	CTNAG	5 cut(s)	723, 917, 1134, 1716, 1975
HpySE526I	ACGT	3 cut(s)	304, 1277, 1393
HspAI	GCGC	2 cut(s)	1165, 1247
Kzo9I	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
LmnI	GCTCC	2 cut(s)	1513, 2215
LweI	GCATC	5 cut(s)	570, 659, 1554, 1801, 1843
MaeI	CTAG	6 cut(s)	72, 800, 1242, 1940, 2069, 2159
MaeII	ACGT	3 cut(s)	304, 1277, 1393
MaeIII	GTNAC	5 cut(s)	19, 802, 1643, 2003, 2110
MalI	GATC	7 cut(s)	93, 460, 530, 1065, 1142, 1290, 1759
MboI	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
MboII	GAAGA	6 cut(s)	200, 346, 691, 1150, 1213, 1462
MflI	RGATCY	3 cut(s)	528, 1140, 1288
MhlI	GDGCHC	3 cut(s)	310, 1579, 2251
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	9 cut(s)	30, 285, 325, 494, 859, 957, 1684, 1799, 2041
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	5 cut(s)	199, 1176, 1201, 1839, 1859
MmeI	TCCRAC	2 cut(s)	218, 1549
Mox20I	TGGCCA	1 cut(s)	782
Mph1103I	ATGCAT	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	1092
MscI	TGGCCA	1 cut(s)	782
MslI	CAYNNNNRTG	3 cut(s)	1490, 1839, 2244
Msp20I	TGGCCA	1 cut(s)	782
MspI	CCGG	1 cut(s)	1765
MspR9I	CCNGG	3 cut(s)	312, 829, 1335
Mva1269I	GAATGC	3 cut(s)	272, 347, 912
MvaI	CCWGG	3 cut(s)	312, 829, 1335
MwoI	GCNNNNNNNGC	8 cut(s)	476, 779, 1006, 1416, 1933, 1949, 2054, 2101
NdeI	CATATG	1 cut(s)	2117
NdeII	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
NheI	GCTAGC	1 cut(s)	1939
NlaIV	GGNNCC	1 cut(s)	1332
NmuCI	GTSAC	3 cut(s)	802, 2003, 2110
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	2 cut(s)	1253, 1904
OliI	CACNNNNGTG	1 cut(s)	2244
PagI	TCATGA	2 cut(s)	1123, 1611
PctI	GAATGC	3 cut(s)	272, 347, 912
PdmI	GAANNNNTTC	1 cut(s)	1092
PfeI	GAWTC	3 cut(s)	887, 946, 1093
PfoI	TCCNGGA	1 cut(s)	1333
PleI	GAGTC	5 cut(s)	198, 1176, 1200, 1839, 1859
PpsI	GAGTC	5 cut(s)	198, 1176, 1200, 1839, 1859
PshAI	GACNNNNGTC	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	1071
Psp1406I	AACGTT	1 cut(s)	1393
Psp6I	CCWGG	3 cut(s)	310, 827, 1333
PspEI	GGTNACC	1 cut(s)	2110
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	3 cut(s)	310, 827, 1333
PspN4I	GGNNCC	1 cut(s)	1332
PspPI	GGNCC	1 cut(s)	1762
PsuI	RGATCY	3 cut(s)	528, 1140, 1288
RsaI	GTAC	3 cut(s)	970, 2038, 2232
RsaNI	GTAC	3 cut(s)	969, 2037, 2231
RseI	CAYNNNNRTG	3 cut(s)	1490, 1839, 2244
Rsr2I	CGGWCCG	1 cut(s)	1762
RsrII	CGGWCCG	1 cut(s)	1762
Sau3AI	GATC	7 cut(s)	91, 458, 528, 1063, 1140, 1288, 1757
Sau96I	GGNCC	1 cut(s)	1762
SchI	GAGTC	5 cut(s)	199, 1176, 1201, 1839, 1859
ScrFI	CCNGG	3 cut(s)	312, 829, 1335
SduI	GDGCHC	3 cut(s)	310, 1579, 2251
SfaNI	GCATC	5 cut(s)	570, 659, 1554, 1801, 1843
SfcI	CTRYAG	3 cut(s)	255, 2184, 2234
SinI	GGWCC	1 cut(s)	1762
SmiMI	CAYNNNNRTG	3 cut(s)	1490, 1839, 2244
SmlI	CTYRAG	4 cut(s)	150, 445, 532, 1752
SmoI	CTYRAG	4 cut(s)	150, 445, 532, 1752
Sse9I	AATT	9 cut(s)	30, 285, 325, 494, 859, 957, 1684, 1799, 2041
SsiI	CCGC	4 cut(s)	176, 875, 2144, 2155
SspMI	CTAG	6 cut(s)	72, 800, 1242, 1940, 2069, 2159
StyD4I	CCNGG	3 cut(s)	310, 827, 1333
TaaI	ACNGT	4 cut(s)	588, 602, 1643, 2036
TaiI	ACGT	3 cut(s)	307, 1280, 1396
TaqI	TCGA	5 cut(s)	844, 1602, 1868, 2202, 2226
TaqII	GACCGA	1 cut(s)	1750
TasI	AATT	9 cut(s)	30, 285, 325, 494, 859, 957, 1684, 1799, 2041
TatI	WGTACW	1 cut(s)	2230
TfiI	GAWTC	3 cut(s)	887, 946, 1093
TscAI	CASTG	9 cut(s)	256, 573, 591, 925, 956, 981, 1011, 1720, 1934
TseFI	GTSAC	3 cut(s)	802, 2003, 2110
Tsp45I	GTSAC	3 cut(s)	802, 2003, 2110
TspDTI	ATGAA	5 cut(s)	200, 315, 432, 611, 1040
TspGWI	ACGGA	1 cut(s)	1503
TspRI	CASTG	9 cut(s)	256, 573, 591, 925, 956, 981, 1011, 1720, 1934
VpaK11BI	GGWCC	1 cut(s)	1762
VspI	ATTAAT	1 cut(s)	1071
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	2 cut(s)	1253, 1904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmiI	GTMKAC	4 cut(s)	363, 925, 1382, 2022
XmnI	GAANNNNTTC	1 cut(s)	1092
XspI	CTAG	6 cut(s)	72, 800, 1242, 1940, 2069, 2159
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.