Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

55498797 .. 55499700

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGGTCAATTAGCAACGAAATTGCTCATGAATTTCGCTTCTTCCGAGCATACAATGATGGCCGCATTGAAACATTTTACAAGACCCAAAAGATCCCACCTTCTACTGATTCCATTACCGGTGTCCAATGCAAAGACGTTGTAATTTCACCCGAAGTTTCGGCCCGGATCTTCCTACCCAAGATCCATGACCCGACCCAAAAACTCCCCGTCCTCTTCTACATCCATGGCGGCGGGTTTTGCCTCGAATCCGCCTTTTCGCCTATGTTCCACAAGCACCTCACCTTGTTGGCCCATGAATCTAGTGCAATTGCGGTTTCGGTCGAATATGGATTGTTTCCGGAGCGACCCATACCCGCTTGCTACGAGGACTCATGGGCCGCACTCAAATGGGTTGTATCCCATTCAACTTTCGATGGCCCTGACCCATGGTTGAACCAGTATGCTGACTTAGATCGACTTTTCTTCGGCGGGGACAGCGGTGGAGCGAACATATGTCACAATCTAGCCGTTCGGATCGGGTCTCATGAGTTACCCGAGGATAGGAGGCTGAAACCGCCTGCAGAAGATTTCGCTAGGTTTGGGTGTGAGAGAGTGTTGATATTTTTTGCTCAGAAAGATCATTTGAGACATGTAGGCCAGTGTTATTATGAAGATTTGAAAAGGAGTGAGTGGGGAGGGAGTGTTGAGGTAGTGGAGCATGAGGATGTTGCCCATGAGTTTCACTTGCTGAGCGAACCTGATGGCGAGAAAGCTCTCGACTTGATTAAGAAATTTGGTTGCTTTGTCAAGCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

267

Amino Acids

30.28

Weight (kDa)

5.76

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	57 - 137	2e-08	BD-FAE
COesterase	PF00135	57 - 112	6.8e-06	Carboxylesterase family
Abhydrolase_3	PF07859	72 - 179	1.4e-28	alpha/beta hydrolase fold
Abhydrolase_3	PF07859	181 - 242	7e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	340
AclWI	GGATC	4 cut(s)	88, 176, 178, 524
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	32, 773
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflIII	ACRYGT	1 cut(s)	631
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	71, 408, 436, 661
AluBI	AGCT	1 cut(s)	755
AluI	AGCT	1 cut(s)	755
Alw26I	GTCTC	2 cut(s)	528, 622
AlwI	GGATC	4 cut(s)	88, 176, 178, 524
Ama87I	CYCGRG	1 cut(s)	536
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	6 cut(s)	61, 162, 291, 378, 418, 637
ApoI	RAATTY	2 cut(s)	32, 773
AsiGI	ACCGGT	1 cut(s)	119
AspS9I	GGNCC	4 cut(s)	163, 292, 378, 419
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	141, 274
AvaI	CYCGRG	1 cut(s)	536
BccI	CCATC	3 cut(s)	53, 410, 737
BceAI	ACGGC	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	528, 622
BfaI	CTAG	3 cut(s)	303, 506, 576
BfmI	CTRYAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	64, 232, 381
BlpI	GCTNAGC	1 cut(s)	731
BlsI	GCNGC	3 cut(s)	65, 233, 382
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	4 cut(s)	163, 292, 378, 419
BmrFI	CCNGG	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	226, 428, 537
BsaWI	WCCGGW	2 cut(s)	119, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	439, 640
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	3 cut(s)	226, 428, 537
BseGI	GGATG	2 cut(s)	222, 712
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	626, 722
BseNI	ACTGG	2 cut(s)	439, 640
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	6 cut(s)	63, 164, 293, 380, 420, 639
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	120, 166, 341
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	528, 622
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	6 cut(s)	63, 164, 293, 380, 420, 639
Bso31I	GGTCTC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	536
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
Bsp1720I	GCTNAGC	1 cut(s)	731
Bsp19I	CCATGG	2 cut(s)	226, 428
BspANI	GGCC	6 cut(s)	63, 164, 293, 380, 420, 639
BspCNI	CTCAG	2 cut(s)	625, 723
BspEI	TCCGGA	1 cut(s)	340
BspHI	TCATGA	2 cut(s)	28, 526
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	4 cut(s)	88, 176, 178, 524
BspTNI	GGTCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	439, 640
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	226, 428, 537
BssMI	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
BssT1I	CCWWGG	2 cut(s)	226, 428
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	361, 561
BstDEI	CTNAG	3 cut(s)	451, 612, 731
BstDSI	CCRYGG	2 cut(s)	226, 428
BstF5I	GGATG	2 cut(s)	222, 712
BstKTI	GATC	6 cut(s)	96, 171, 186, 457, 519, 622
BstMAI	GTCTC	2 cut(s)	528, 622
BstMBI	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 477, 556
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	561
BstX2I	RGATCY	3 cut(s)	93, 168, 183
BstYI	RGATCY	3 cut(s)	93, 168, 183
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	6 cut(s)	63, 164, 293, 380, 420, 639
BtgI	CCRYGG	2 cut(s)	226, 428
BtsCI	GGATG	2 cut(s)	222, 712
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	361, 561
CciI	TCATGA	2 cut(s)	28, 526
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	163, 292, 378, 419
CspAI	ACCGGT	1 cut(s)	119
CviJI	RGCY	9 cut(s)	63, 164, 293, 380, 420, 509, 550, 639, 755
CviKI_1	RGCY	9 cut(s)	63, 164, 293, 380, 420, 509, 550, 639, 755
DdeI	CTNAG	3 cut(s)	451, 612, 731
DpnI	GATC	6 cut(s)	95, 170, 185, 456, 518, 621
DpnII	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	226, 428
Eco31I	GGTCTC	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	226, 428
ErhI	CCWWGG	2 cut(s)	226, 428
FaqI	GGGAC	1 cut(s)	488
FauI	CCCGC	3 cut(s)	227, 364, 464
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	64, 232, 381
FokI	GGATG	2 cut(s)	209, 719
Fsp4HI	GCNGC	3 cut(s)	64, 232, 381
FspBI	CTAG	3 cut(s)	303, 506, 576
GluI	GCNGC	3 cut(s)	64, 232, 381
HaeIII	GGCC	6 cut(s)	63, 164, 293, 380, 420, 639
HapII	CCGG	3 cut(s)	120, 166, 341
HinfI	GANTC	4 cut(s)	110, 248, 299, 371
HpaII	CCGG	3 cut(s)	120, 166, 341
HphI	GGTGA	2 cut(s)	141, 274
Hpy188I	TCNGA	3 cut(s)	47, 516, 615
Hpy188III	TCNNGA	4 cut(s)	29, 341, 527, 758
HpyAV	CCTTC	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	132, 308, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 477, 556
HpyF3I	CTNAG	3 cut(s)	451, 612, 731
HpySE526I	ACGT	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
LmnI	GCTCC	3 cut(s)	343, 485, 697
LpnPI	CCDG	8 cut(s)	133, 179, 354, 435, 452, 573, 653, 753
MaeI	CTAG	3 cut(s)	303, 506, 576
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	497, 531
MalI	GATC	6 cut(s)	95, 170, 185, 456, 518, 621
MboI	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
MboII	GAAGA	6 cut(s)	34, 163, 208, 457, 578, 665
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	3 cut(s)	93, 168, 183
MluCI	AATT	6 cut(s)	9, 21, 32, 144, 309, 773
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	9 cut(s)	224, 254, 290, 361, 532, 540, 671, 682, 697
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	2 cut(s)	388, 705
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	3 cut(s)	120, 166, 341
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	240, 477, 556
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	226, 428
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	635
PagI	TCATGA	2 cut(s)	28, 526
PciI	ACATGT	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	110, 248, 299
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	65, 233, 382
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PscI	ACATGT	1 cut(s)	631
PspPI	GGNCC	4 cut(s)	163, 292, 378, 419
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	3 cut(s)	93, 168, 183
RseI	CAYNNNNRTG	2 cut(s)	388, 705
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	3 cut(s)	64, 232, 381
Sau3AI	GATC	6 cut(s)	93, 168, 183, 454, 516, 619
Sau96I	GGNCC	4 cut(s)	163, 292, 378, 419
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	103, 141, 282, 287, 581, 693, 742, 757
SfcI	CTRYAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	388, 705
Sse9I	AATT	6 cut(s)	9, 21, 32, 144, 309, 773
SspMI	CTAG	3 cut(s)	303, 506, 576
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	226, 428
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	246, 324, 414, 457, 759
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	6 cut(s)	9, 21, 32, 144, 309, 773
TauI	GCSGC	3 cut(s)	66, 234, 383
TfiI	GAWTC	3 cut(s)	110, 248, 299
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	45, 312, 666
TspRI	CASTG	1 cut(s)	647
XapI	RAATTY	2 cut(s)	32, 773
XceI	RCATGY	1 cut(s)	635
XspI	CTAG	3 cut(s)	303, 506, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.