Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

55515556 .. 55516476

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGTCAACTAACCAGGAAGTCGCTCGCGAGTTTCGCCTCCTCAAGGTATACAAAGATGGTCGCGTCGAAAAGTTCTACAACACCCAAAAGGTCCCACCTTCCACCGACTCCGTCACCGGCTTCCAATCCAAGGACGTCCTCATTTCACAAGAACCCGCCGTTTCTGCCAGCGTCTTCCTACCCAAGATCCACGACCCGACCCAGAAACTCCCCATCCTATTCTACATCCACGGCGGCGGGTTCTGCTTGGAGTCTGCTTTCTCTCCAATGTTTCACAAGCACCTCACCTCCTTAGCCGCCGAAGCCAACGCCATCGCCGTCTCCGTCGAATACGGGTTGTTCCCGGATCGACCCATACCTGCTTGCTACGACGACTCGTGGGCCGCCCTAAAATGGGTCCAGTCCCACTCGACCCGATCAGGATCTGACCCGTGGCTGAACCACCTGGCTGTTCGGGTCGGGTCAATCGGGTTACCCGGAGTGAAAGTCGCGGGAATGGTTATGGTGCATCCCTTTTTTGGTGGGTCGGCCGTGGACGACGAAATGTGGCTGTACATGTGTCCGGAGAACGGTGGGGTGCAGGACAGGAGGCTGAGGCGGCCGGCAGAGGATCTGGCTAAGCTTGGATGCGAGAGGGTGTTGATATTTTTTGCGGAGAAGGATCATCTGAGAGAGGTAGGGCGGTGGTACTGCGATGAGCTGAAGAAGAGTGAGTGGGGTGGGAGTGTTGAAGTGGTGGAGCATGAGGATGAGTTTCACGAGTTTCATTTGCGCAGAGAACCTGAGGGAGAGAAAGCTCAGGACTTGATCAAGAAGTTTGGTTCCTTCATCAAGCAAAACGTACTAAGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

6.01

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	50 - 142	7.9e-07	Carboxylesterase family
BD-FAE	PF20434	67 - 141	3.1e-08	BD-FAE
Abhydrolase_3	PF07859	74 - 257	7e-24	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc16I	TGCGCA	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	3 cut(s)	30, 66, 494
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	9 cut(s)	159, 237, 240, 300, 387, 494, 601, 656, 685
AclWI	GGATC	5 cut(s)	184, 357, 433, 621, 672
AcoI	YGGCCR	2 cut(s)	531, 602
AcuI	CTGAAG	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	3 cut(s)	557, 692, 846
AfiI	CCNNNNNNNGG	6 cut(s)	46, 133, 396, 397, 521, 572
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	15, 447
AluBI	AGCT	3 cut(s)	625, 703, 800
AluI	AGCT	3 cut(s)	625, 703, 800
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	5 cut(s)	184, 357, 433, 621, 672
AlwNI	CAGNNNCTG	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	3 cut(s)	384, 531, 602
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	3 cut(s)	94, 384, 400
AsuC2I	CCSGG	2 cut(s)	347, 480
AsuHPI	GGTGA	2 cut(s)	109, 280
AvaII	GGWCC	2 cut(s)	94, 400
AxyI	CCTNAGG	1 cut(s)	786
BauI	CACGAG	2 cut(s)	379, 761
BbsI	GAAGAC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	596
BccI	CCATC	3 cut(s)	53, 224, 323
BceAI	ACGGC	4 cut(s)	146, 250, 305, 518
BciT130I	CCWGG	2 cut(s)	17, 449
BclI	TGATCA	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	347, 480
BcoDI	GTCTC	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	238, 300, 387, 602
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	4 cut(s)	239, 301, 388, 603
Bme1390I	CCNGG	4 cut(s)	17, 347, 449, 480
Bme18I	GGWCC	2 cut(s)	94, 400
BmgT120I	GGNCC	3 cut(s)	94, 384, 400
BmiI	GGNNCC	3 cut(s)	96, 401, 826
BmrFI	CCNGG	4 cut(s)	17, 347, 449, 480
BmsI	GCATC	2 cut(s)	520, 620
BpiI	GAAGAC	1 cut(s)	169
Bpu10I	CCTNAGC	3 cut(s)	295, 596, 801
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	347, 480
BsaBI	GATNNNNATC	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	132, 232, 434, 534
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 474, 504
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 133, 396, 397, 521, 572
Bse118I	RCCGGY	2 cut(s)	119, 604
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	424
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	17, 449
BseDI	CCNNGG	4 cut(s)	132, 232, 434, 534
BseGI	GGATG	5 cut(s)	216, 228, 511, 635, 757
BseJI	GATNNNNATC	1 cut(s)	424
BseLI	CCNNNNNNNGG	6 cut(s)	46, 133, 396, 397, 521, 572
BseMII	CTCAG	4 cut(s)	587, 662, 777, 815
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	32
BseX3I	CGGCCG	2 cut(s)	531, 602
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	3 cut(s)	30, 66, 494
Bsh1285I	CGRYCG	2 cut(s)	534, 605
BshFI	GGCC	3 cut(s)	386, 533, 604
BsiEI	CGRYCG	2 cut(s)	534, 605
BsiSI	CCGG	5 cut(s)	120, 347, 480, 566, 605
BslFI	GGGAC	2 cut(s)	80, 391
BslI	CCNNNNNNNGG	6 cut(s)	46, 133, 396, 397, 521, 572
BsmAI	GTCTC	1 cut(s)	328
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	80, 391
BsnI	GGCC	3 cut(s)	386, 533, 604
Bsp13I	TCCGGA	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
Bsp1720I	GCTNAGC	1 cut(s)	621
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	9 cut(s)	159, 237, 240, 300, 387, 494, 601, 656, 685
BspANI	GGCC	3 cut(s)	386, 533, 604
BspCNI	CTCAG	4 cut(s)	588, 663, 778, 814
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	3 cut(s)	30, 66, 494
BspLI	GGNNCC	3 cut(s)	96, 401, 826
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	5 cut(s)	184, 357, 433, 621, 672
BsrFI	RCCGGY	2 cut(s)	119, 604
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	2 cut(s)	119, 604
BssECI	CCNNGG	4 cut(s)	132, 232, 434, 534
BssMI	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
BssNAI	GTATAC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	2 cut(s)	379, 761
BssT1I	CCWWGG	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	52
Bst2BI	CACGAG	2 cut(s)	379, 761
Bst2UI	CCWGG	2 cut(s)	17, 449
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	1 cut(s)	704
BstACI	GRCGYC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	4 cut(s)	28, 172, 367, 606
BstDEI	CTNAG	7 cut(s)	295, 596, 621, 671, 786, 801, 848
BstDSI	CCRYGG	3 cut(s)	232, 434, 534
BstEII	GGTNACC	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	5 cut(s)	216, 228, 511, 635, 757
BstFNI	CGCG	3 cut(s)	30, 66, 494
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	7 cut(s)	192, 352, 422, 428, 616, 667, 813
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
BstMCI	CGRYCG	2 cut(s)	534, 605
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 167, 246, 305, 601
BstNI	CCWGG	2 cut(s)	17, 449
BstNSI	RCATGY	1 cut(s)	562
BstPI	GGTNACC	1 cut(s)	474
BstSCI	CCNGG	4 cut(s)	15, 345, 447, 478
BstUI	CGCG	3 cut(s)	30, 66, 494
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	3 cut(s)	189, 425, 613
BstYI	RGATCY	3 cut(s)	189, 425, 613
BstZ17I	GTATAC	1 cut(s)	52
BstZI	CGGCCG	2 cut(s)	531, 602
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	386, 533, 604
BtgI	CCRYGG	3 cut(s)	232, 434, 534
BtgZI	GCGATG	2 cut(s)	301, 711
BtsCI	GGATG	5 cut(s)	216, 228, 511, 635, 757
BtuMI	TCGCGA	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	4 cut(s)	28, 172, 367, 606
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	1 cut(s)	777
Cfr10I	RCCGGY	2 cut(s)	119, 604
Cfr13I	GGNCC	3 cut(s)	94, 384, 400
CseI	GACGC	2 cut(s)	55, 163
Csp6I	GTAC	3 cut(s)	556, 691, 845
CviAII	CATG	2 cut(s)	559, 746
CviQI	GTAC	3 cut(s)	556, 691, 845
DdeI	CTNAG	7 cut(s)	295, 596, 621, 671, 786, 801, 848
DpnI	GATC	7 cut(s)	191, 351, 421, 427, 615, 666, 812
DpnII	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
EaeI	YGGCCR	2 cut(s)	531, 602
EagI	CGGCCG	2 cut(s)	531, 602
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EclXI	CGGCCG	2 cut(s)	531, 602
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	94, 400
Eco52I	CGGCCG	2 cut(s)	531, 602
Eco57I	CTGAAG	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	786
Eco91I	GGTNACC	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	15, 447
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	2 cut(s)	562, 749
FaiI	YATR	5 cut(s)	52, 359, 506, 560, 747
FaqI	GGGAC	2 cut(s)	80, 391
FatI	CATG	2 cut(s)	558, 745
FauI	CCCGC	3 cut(s)	166, 233, 487
FbaI	TGATCA	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	238, 300, 387, 602
FokI	GGATG	5 cut(s)	203, 215, 498, 642, 764
Fsp4HI	GCNGC	4 cut(s)	238, 300, 387, 602
FspI	TGCGCA	1 cut(s)	776
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	4 cut(s)	238, 300, 387, 602
HaeIII	GGCC	3 cut(s)	386, 533, 604
HapII	CCGG	5 cut(s)	120, 347, 480, 566, 605
HgaI	GACGC	2 cut(s)	55, 163
HhaI	GCGC	1 cut(s)	777
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	562, 749
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	5, 110, 254, 377
HpaII	CCGG	5 cut(s)	120, 347, 480, 566, 605
HphI	GGTGA	2 cut(s)	109, 280
Hpy166II	GTNNAC	3 cut(s)	9, 52, 538
Hpy188I	TCNGA	2 cut(s)	430, 672
Hpy188III	TCNNGA	6 cut(s)	29, 423, 566, 761, 803, 814
Hpy8I	GTNNAC	3 cut(s)	9, 52, 538
Hpy99I	CGWCG	4 cut(s)	71, 332, 377, 545
HpyAV	CCTTC	3 cut(s)	111, 655, 838
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	2 cut(s)	138, 843
HpyCH4V	TGCA	2 cut(s)	511, 583
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 167, 246, 305, 601
HpyF3I	CTNAG	7 cut(s)	295, 596, 621, 671, 786, 801, 848
HpySE526I	ACGT	2 cut(s)	138, 843
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	562, 749
HspAI	GCGC	1 cut(s)	775
Kpn2I	TCCGGA	1 cut(s)	565
KroI	GCCGGC	1 cut(s)	604
KroNI	GCCGGC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
LmnI	GCTCC	1 cut(s)	742
LweI	GCATC	2 cut(s)	520, 620
MaeII	ACGT	2 cut(s)	138, 843
MaeIII	GTNAC	2 cut(s)	115, 474
MalI	GATC	7 cut(s)	191, 351, 421, 427, 615, 666, 812
MboI	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
MboII	GAAGA	3 cut(s)	169, 718, 721
MflI	RGATCY	3 cut(s)	189, 425, 613
MlyI	GAGTC	4 cut(s)	14, 104, 263, 371
MroI	TCCGGA	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	604
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	5 cut(s)	120, 347, 480, 566, 605
MspR9I	CCNGG	4 cut(s)	17, 347, 449, 480
MvaI	CCWGG	2 cut(s)	17, 449
MvnI	CGCG	3 cut(s)	30, 66, 494
MwoI	GCNNNNNNNGC	5 cut(s)	36, 167, 246, 305, 601
NaeI	GCCGGC	1 cut(s)	606
NciI	CCSGG	2 cut(s)	347, 480
NdeII	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
NgoMIV	GCCGGC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	562, 749
NlaIV	GGNNCC	3 cut(s)	96, 401, 826
NmuCI	GTSAC	1 cut(s)	115
NruI	TCGCGA	1 cut(s)	30
NsbI	TGCGCA	1 cut(s)	776
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 324
PdiI	GCCGGC	1 cut(s)	606
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	239, 301, 388, 603
PleI	GAGTC	4 cut(s)	13, 104, 262, 371
PpsI	GAGTC	4 cut(s)	13, 104, 262, 371
PpuMI	RGGWCCY	1 cut(s)	94
PscI	ACATGT	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	15, 447
PspEI	GGTNACC	1 cut(s)	474
PspGI	CCWGG	2 cut(s)	15, 447
PspN4I	GGNNCC	3 cut(s)	96, 401, 826
PspPI	GGNCC	3 cut(s)	94, 384, 400
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	3 cut(s)	189, 425, 613
PsyI	GACNNNGTC	1 cut(s)	113
RruI	TCGCGA	1 cut(s)	30
RsaI	GTAC	3 cut(s)	557, 692, 846
RsaNI	GTAC	3 cut(s)	556, 691, 845
RseI	CAYNNNNRTG	1 cut(s)	750
SatI	GCNGC	4 cut(s)	238, 300, 387, 602
Sau3AI	GATC	7 cut(s)	189, 349, 419, 425, 613, 664, 810
Sau96I	GGNCC	3 cut(s)	94, 384, 400
SchI	GAGTC	4 cut(s)	14, 104, 263, 371
ScrFI	CCNGG	4 cut(s)	17, 347, 449, 480
SfaNI	GCATC	2 cut(s)	520, 620
SinI	GGWCC	2 cut(s)	94, 400
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	9 cut(s)	159, 237, 240, 300, 387, 494, 601, 656, 685
StyD4I	CCNGG	4 cut(s)	15, 345, 447, 478
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	2 cut(s)	141, 846
TaqI	TCGA	4 cut(s)	69, 330, 352, 413
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	4 cut(s)	240, 302, 389, 604
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	758, 820
TspGWI	ACGGA	2 cut(s)	103, 316
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	94, 400
XagI	CCTNNNNNAGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	51
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.