Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Reverse (-)

55102407 .. 55103692

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGCCAACTAAAAACGAAGTCGCTCACGAGTTTCGCTTCTTCAAGGCTTACAAAGATGGCCGCGTCGAAATATTCTACAACACGCAGAAAGTCCCACCTTCCACTGACTCCGTCACCGGCGTCCAATCCAAAGACGTCATCATTTCACAAGAACCCGCCGTTTCTGCCCGCATCTTCTTACCCAAGATCCACAACCCGACCCAAAAACTCCCCATCCTGTTCTACATCCACGGCGGCGGGTTTTGCTTCGAGTCCGCCTTCTCTCCCATGTTCCACAAGCAGCTCACCTCTTTAGCCGCCGAAGCCAACGCCATTGCCGTCTCCGTCGAATACGGGCTGTTCCCGGATCGGCCCATACCCGCCTGCTACGACGACACCTGGGCTGCCCTCAAATGGGTCCAGTCCCACTCGAACCGAGACGGACCCGACCCGTGGATGAACCAGTACGCCGACTTCGACCGGGTTTTCTTATGCGGCGACAGCGGCGGAGCCAATATGTGCCACAACCTGGCTGTTCGGGTCGGATCAGACGGGTTACCAGGAGTGAAAGTGGCGGGAATGGTTATGGTGCATCCCTTTTTTGGTGGGTTGGCTGTGGACGACGAAATGTGGCTGTACATGTGTCCGGAGAACGGCGGGGTGCAGGACAGGAGGCTGAGGCCGCCGGCAGAGGATCTGGCGACGCTTGGATGCGAGAAGATGTTGATATTTTTTGCGGAGAAGGATCATCTGAGAGAGGTAGGGCAGTGGTACTATGATGAGCTGAAGAAGAGTGAGTGGGGTGGGAGTGTTGAAGTGGTGGAGCATGAGGATGAGTTTCATGAGTTTCACTTGCTGAGTGAACCTGAGGGACAGAAAGCTTTGGACTTGATCAGGAAGTTTGGTTCGTTCATCAAGCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

302

Amino Acids

34.07

Weight (kDa)

5.22

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	58 - 177	1.2e-08	Carboxylesterase family
BD-FAE	PF20434	59 - 170	5.1e-10	BD-FAE
Abhydrolase_3	PF07859	74 - 278	7.2e-41	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccII	CGCG	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	628
AclWI	GGATC	5 cut(s)	184, 357, 535, 684, 735
AcoI	YGGCCR	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	788
AcyI	GRCGYC	2 cut(s)	123, 138
AfaI	GTAC	3 cut(s)	449, 620, 755
AfiI	CCNNNNNNNGG	6 cut(s)	396, 397, 435, 511, 584, 635
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	2 cut(s)	46, 797
AjnI	CCWGG	3 cut(s)	380, 510, 541
AloI	GAACNNNNNNTCC	2 cut(s)	871, 903
AluBI	AGCT	3 cut(s)	286, 766, 863
AluI	AGCT	3 cut(s)	286, 766, 863
Alw26I	GTCTC	2 cut(s)	328, 414
AlwI	GGATC	5 cut(s)	184, 357, 535, 684, 735
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	3 cut(s)	61, 353, 662
ApeKI	GCWGC	2 cut(s)	283, 386
AspS9I	GGNCC	3 cut(s)	354, 400, 425
AsuC2I	CCSGG	2 cut(s)	347, 464
AsuHPI	GGTGA	2 cut(s)	109, 280
AvaII	GGWCC	2 cut(s)	400, 425
AxyI	CCTNAGG	1 cut(s)	849
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BauI	CACGAG	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	295, 373
BccI	CCATC	2 cut(s)	53, 224
BceAI	ACGGC	4 cut(s)	146, 250, 305, 652
BciT130I	CCWGG	3 cut(s)	382, 512, 543
BclI	TGATCA	1 cut(s)	873
BcnI	CCSGG	2 cut(s)	347, 464
BcoDI	GTCTC	2 cut(s)	328, 414
BisI	GCNGC	8 cut(s)	64, 238, 284, 300, 387, 478, 487, 665
BlsI	GCNGC	8 cut(s)	65, 239, 285, 301, 388, 479, 488, 666
Bme1390I	CCNGG	5 cut(s)	347, 382, 464, 512, 543
Bme18I	GGWCC	2 cut(s)	400, 425
BmgT120I	GGNCC	3 cut(s)	354, 400, 425
BmiI	GGNNCC	4 cut(s)	6, 401, 427, 493
BmrFI	CCNGG	5 cut(s)	347, 382, 464, 512, 543
BmsI	GCATC	3 cut(s)	183, 583, 683
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	347, 464
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaJI	CCNNGG	3 cut(s)	232, 381, 434
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	6 cut(s)	396, 397, 435, 511, 584, 635
Bse118I	RCCGGY	2 cut(s)	119, 667
Bse1I	ACTGG	2 cut(s)	403, 445
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	3 cut(s)	382, 512, 543
BseDI	CCNNGG	3 cut(s)	232, 381, 434
BseGI	GGATG	6 cut(s)	216, 228, 444, 574, 698, 820
BseLI	CCNNNNNNNGG	6 cut(s)	396, 397, 435, 511, 584, 635
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	4 cut(s)	650, 725, 830, 840
BseNI	ACTGG	2 cut(s)	403, 445
BseXI	GCAGC	2 cut(s)	295, 373
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	63, 355, 664
BsiEI	CGRYCG	1 cut(s)	463
BsiSI	CCGG	5 cut(s)	120, 347, 463, 629, 668
BslFI	GGGAC	3 cut(s)	80, 391, 867
BslI	CCNNNNNNNGG	6 cut(s)	396, 397, 435, 511, 584, 635
BsmAI	GTCTC	2 cut(s)	328, 414
BsmBI	CGTCTC	2 cut(s)	328, 414
BsmFI	GGGAC	3 cut(s)	80, 391, 867
BsnI	GGCC	3 cut(s)	63, 355, 664
Bsp13I	TCCGGA	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
BspANI	GGCC	3 cut(s)	63, 355, 664
BspCNI	CTCAG	4 cut(s)	651, 726, 831, 841
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	4 cut(s)	6, 401, 427, 493
BspPI	GGATC	5 cut(s)	184, 357, 535, 684, 735
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	119, 667
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	403, 445
BssAI	RCCGGY	2 cut(s)	119, 667
BssECI	CCNNGG	3 cut(s)	232, 381, 434
BssMI	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
BssNI	GRCGYC	2 cut(s)	123, 138
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	3 cut(s)	382, 512, 543
Bst6I	CTCTTC	1 cut(s)	767
BstACI	GRCGYC	2 cut(s)	123, 138
BstAUI	TGTACA	1 cut(s)	618
BstC8I	GCNNGC	3 cut(s)	172, 367, 669
BstDEI	CTNAG	4 cut(s)	659, 734, 839, 849
BstDSI	CCRYGG	2 cut(s)	232, 434
BstEII	GGTNACC	1 cut(s)	537
BstF5I	GGATG	6 cut(s)	216, 228, 444, 574, 698, 820
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	6 cut(s)	192, 352, 530, 679, 730, 876
BstMAI	GTCTC	2 cut(s)	328, 414
BstMBI	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 246, 305, 483, 486, 664
BstNI	CCWGG	3 cut(s)	382, 512, 543
BstNSI	RCATGY	1 cut(s)	625
BstPI	GGTNACC	1 cut(s)	537
BstSCI	CCNGG	5 cut(s)	345, 380, 462, 510, 541
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	295, 373
BstX2I	RGATCY	2 cut(s)	189, 676
BstYI	RGATCY	2 cut(s)	189, 676
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	63, 355, 664
BtgI	CCRYGG	2 cut(s)	232, 434
BtsCI	GGATG	6 cut(s)	216, 228, 444, 574, 698, 820
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	105, 755
Cac8I	GCNNGC	3 cut(s)	172, 367, 669
CciI	TCATGA	1 cut(s)	823
Cfr10I	RCCGGY	2 cut(s)	119, 667
Cfr13I	GGNCC	3 cut(s)	354, 400, 425
CseI	GACGC	3 cut(s)	55, 112, 694
Csp6I	GTAC	3 cut(s)	448, 619, 754
CviAII	CATG	4 cut(s)	271, 622, 809, 824
CviQI	GTAC	3 cut(s)	448, 619, 754
DdeI	CTNAG	4 cut(s)	659, 734, 839, 849
DpnI	GATC	6 cut(s)	191, 351, 529, 678, 729, 875
DpnII	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
EciI	GGCGGA	2 cut(s)	247, 504
Eco47I	GGWCC	2 cut(s)	400, 425
Eco57I	CTGAAG	1 cut(s)	788
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	537
EcoRII	CCWGG	3 cut(s)	380, 510, 541
Esp3I	CGTCTC	2 cut(s)	328, 414
FaeI	CATG	4 cut(s)	274, 625, 812, 827
FaiI	YATR	9 cut(s)	272, 359, 475, 500, 569, 623, 759, 810, 825
FaqI	GGGAC	3 cut(s)	80, 391, 867
FatI	CATG	4 cut(s)	270, 621, 808, 823
FauI	CCCGC	6 cut(s)	166, 179, 233, 370, 550, 632
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	8 cut(s)	64, 238, 284, 300, 387, 478, 487, 665
FokI	GGATG	6 cut(s)	203, 215, 451, 561, 705, 827
Fsp4HI	GCNGC	8 cut(s)	64, 238, 284, 300, 387, 478, 487, 665
GluI	GCNGC	8 cut(s)	64, 238, 284, 300, 387, 478, 487, 665
HaeIII	GGCC	3 cut(s)	63, 355, 664
HapII	CCGG	5 cut(s)	120, 347, 463, 629, 668
HgaI	GACGC	3 cut(s)	55, 112, 694
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	4 cut(s)	274, 625, 812, 827
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	2 cut(s)	110, 254
HpaII	CCGG	5 cut(s)	120, 347, 463, 629, 668
HphI	GGTGA	2 cut(s)	109, 280
Hpy166II	GTNNAC	2 cut(s)	601, 845
Hpy188I	TCNGA	3 cut(s)	527, 532, 735
Hpy188III	TCNNGA	4 cut(s)	29, 629, 824, 877
Hpy8I	GTNNAC	2 cut(s)	601, 845
Hpy99I	CGWCG	5 cut(s)	71, 332, 377, 608, 688
HpyAV	CCTTC	3 cut(s)	111, 271, 718
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	574, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 246, 305, 483, 486, 664
HpyF3I	CTNAG	4 cut(s)	659, 734, 839, 849
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	4 cut(s)	274, 625, 812, 827
Kpn2I	TCCGGA	1 cut(s)	628
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
LmnI	GCTCC	3 cut(s)	4, 491, 805
Lsp1109I	GCAGC	2 cut(s)	295, 373
LweI	GCATC	3 cut(s)	183, 583, 683
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	115, 537
MalI	GATC	6 cut(s)	191, 351, 529, 678, 729, 875
MboI	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
MboII	GAAGA	5 cut(s)	34, 169, 712, 781, 784
MflI	RGATCY	2 cut(s)	189, 676
MlyI	GAGTC	2 cut(s)	104, 263
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	8 cut(s)	301, 401, 648, 654, 667, 733, 805, 844
MroI	TCCGGA	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	667
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	5 cut(s)	120, 347, 463, 629, 668
MspR9I	CCNGG	5 cut(s)	347, 382, 464, 512, 543
MvaI	CCWGG	3 cut(s)	382, 512, 543
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	167, 246, 305, 483, 486, 664
NaeI	GCCGGC	1 cut(s)	669
NciI	CCSGG	2 cut(s)	347, 464
NdeII	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	4 cut(s)	274, 625, 812, 827
NlaIV	GGNNCC	4 cut(s)	6, 401, 427, 493
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	625
PagI	TCATGA	1 cut(s)	823
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 456
PdiI	GCCGGC	1 cut(s)	669
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	8 cut(s)	65, 239, 285, 301, 388, 479, 488, 666
PleI	GAGTC	2 cut(s)	104, 262
PpsI	GAGTC	2 cut(s)	104, 262
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	380, 510, 541
PspEI	GGTNACC	1 cut(s)	537
PspGI	CCWGG	3 cut(s)	380, 510, 541
PspN4I	GGNNCC	4 cut(s)	6, 401, 427, 493
PspPI	GGNCC	3 cut(s)	354, 400, 425
PsuI	RGATCY	2 cut(s)	189, 676
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	3 cut(s)	449, 620, 755
RsaNI	GTAC	3 cut(s)	448, 619, 754
RseI	CAYNNNNRTG	1 cut(s)	813
SatI	GCNGC	8 cut(s)	64, 238, 284, 300, 387, 478, 487, 665
Sau3AI	GATC	6 cut(s)	189, 349, 527, 676, 727, 873
Sau96I	GGNCC	3 cut(s)	354, 400, 425
SchI	GAGTC	2 cut(s)	104, 263
ScrFI	CCNGG	5 cut(s)	347, 382, 464, 512, 543
SfaNI	GCATC	3 cut(s)	183, 583, 683
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	400, 425
SmiMI	CAYNNNNRTG	1 cut(s)	813
SspI	AATATT	1 cut(s)	75
StyD4I	CCNGG	5 cut(s)	345, 380, 462, 510, 541
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	69, 252, 330, 413, 459
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	6 cut(s)	66, 240, 302, 480, 489, 667
TscAI	CASTG	2 cut(s)	112, 755
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	283, 386
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	455, 812, 883
TspGWI	ACGGA	3 cut(s)	103, 316, 438
TspRI	CASTG	2 cut(s)	112, 755
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	400, 425
XceI	RCATGY	1 cut(s)	625
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.