Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006911

Physical Location & Seq

Genomic Coordinates Forward (+)

13669326 .. 13670228

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGCCAATCAACGACGAGATTGCTCGTGAATTTCGCTTCTTCCGGGTGTACAAAGACGGTCGCATAGAAATATTCTACAAGACACAAAAGGTCCCCCCTTCGACTGACGCAATCACTGGTGTGCAATCCAAGGACGTCACAATTCAACCCGAACCCGCCGTTTCTGCCCGTATCTTCCTTCCCAAGATCCACGACCCGGCCCAAAAGCTCCCCGTTCTCCTCTACCTCCACGGCGGTGGGTTTATCTTCGAGTCTGCCTTCTCTCCTATTTATCACAACTTCGTCGGCCGATTGGCAGCTGAAGCCCACGCAATCGTAGTGTCCGTCGAATACGGGTTGTTCCCGGATCGCCCCGTACCCGCTTGCTATGAAGACTCATGGGCGGCGCTCAAATGGCTCGCGTCCCACGCTAGTGGGGATGGAACCGAGTCGTGGTTAAACAAGTATGCTGACTTTGACCGGTTGTTTATAGGCGGGGACAGCGGTGGAGCAAATTTGTCGCACTATTTGGCTGTCCGGGTCGGGTCCCTCGGGCAACCGGATTTGAAGATTGGTGGAGTTGTGCTGGTGCATCCGTTCTTTGGGGGCTTGGAGGAGGACGACCAAATGTTTCTGTACATGTGTACGGAGAACGGTGGGTTGGAGGATCGTAGGCTGAGGCCGCCCCCAGAGGATTTCAAAAGGCTAGCTTGCGGGAAGATGTTGATATTTTTCGCGGCGGGAGACCATCTGAGAGGGGCGGGCCAGCTGTACTATGAGGACCTGAAAAAGAGTGAGTGGGGCGGGAGTGTCGACGTGGTGGAGCATGGTGAAGGACATGTGTTTCACTTGTTCAATTCGGACTGTGAGAATGCTGCGGACTTGGTGAAAAAATTTGGATCCTTCATCAACCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

301

Amino Acids

33.41

Weight (kDa)

5.46

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	59 - 173	1.8e-09	BD-FAE
COesterase	PF00135	59 - 114	1e-05	Carboxylesterase family
Abhydrolase_3	PF07859	74 - 277	3.6e-37	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06490 FvH4_2g06510
malus_domestica	MD10G1091100.v1.1
prunus_persica	Prupe.8G120900_v2.0.a1 Prupe.8G121000_v2.0.a1
pyrus_communis	pycom10g07490
rosa_chinensis	RchiOBHm_Chr6g0258331 RchiOBHm_Chr6g0258351 RchiOBHm_Chr6g0258361
rosa_laevigata	RLG00000014618 RLG00000014619 RLG00000014620
rosa_multiflora	Rmu_co8322479.1_g000001 Rmu_sc0005084.1_g000005 Rmu_sc0010616.1_g000025 Rmu_sc0011875.1_g000004
rosa_roxburghii	Rroxscaffold_178G00437360 Rroxscaffold_178G00437370 Rroxscaffold_7G00205530 Rroxscaffold_7G00205540
rosa_rugosa	Rorug05G0581100 Rorug05G0581200
rosa_samantha	Rh6CG085800 Rh6CG086000
rosa_wichuraiana	Rw6G008450 Rw6G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	2 cut(s)	404, 719
AclWI	GGATC	5 cut(s)	184, 357, 657, 876, 889
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	32, 496, 875
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	5 cut(s)	53, 360, 620, 628, 755
AfiI	CCNNNNNNNGG	3 cut(s)	199, 435, 584
AflIII	ACRYGT	2 cut(s)	621, 820
AgeI	ACCGGT	1 cut(s)	462
AgsI	TTSAA	4 cut(s)	149, 550, 682, 838
AjiI	CACGTC	1 cut(s)	799
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	3 cut(s)	122, 237, 414
AluBI	AGCT	4 cut(s)	211, 302, 692, 751
AluI	AGCT	4 cut(s)	211, 302, 692, 751
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	5 cut(s)	184, 357, 657, 876, 889
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	4 cut(s)	201, 289, 662, 745
ApeKI	GCWGC	2 cut(s)	299, 857
ApoI	RAATTY	3 cut(s)	32, 496, 875
AsiGI	ACCGGT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	5 cut(s)	94, 202, 528, 745, 763
AsuC2I	CCSGG	4 cut(s)	47, 200, 347, 521
AsuHPI	GGTGA	2 cut(s)	824, 880
AsuNHI	GCTAGC	1 cut(s)	688
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	94, 528, 763
BamHI	GGATCC	1 cut(s)	881
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	311, 844
BccI	CCATC	2 cut(s)	416, 738
BceAI	ACGGC	2 cut(s)	146, 250
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 483, 517
BcnI	CCSGG	4 cut(s)	47, 200, 347, 521
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	414, 689
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	5 cut(s)	300, 387, 665, 720, 858
BlsI	GCNGC	5 cut(s)	301, 388, 666, 721, 859
Bme1390I	CCNGG	4 cut(s)	47, 200, 347, 521
Bme18I	GGWCC	3 cut(s)	94, 528, 763
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	799
BmgT120I	GGNCC	5 cut(s)	94, 202, 528, 745, 763
BmiI	GGNNCC	6 cut(s)	6, 96, 427, 529, 530, 883
BmrFI	CCNGG	4 cut(s)	47, 200, 347, 521
BmsI	GCATC	1 cut(s)	583
BmtI	GCTAGC	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	4 cut(s)	47, 200, 347, 521
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	3 cut(s)	132, 232, 532
BsaWI	WCCGGW	2 cut(s)	462, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 435, 584
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	3 cut(s)	132, 232, 532
BseGI	GGATG	2 cut(s)	427, 574
BseLI	CCNNNNNNNGG	3 cut(s)	199, 435, 584
BseMII	CTCAG	2 cut(s)	650, 725
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	212, 611
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	311, 844
Bsh1236I	CGCG	2 cut(s)	404, 719
Bsh1285I	CGRYCG	2 cut(s)	64, 292
BshFI	GGCC	4 cut(s)	203, 291, 664, 747
BshTI	ACCGGT	1 cut(s)	462
BsiEI	CGRYCG	2 cut(s)	64, 292
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	6 cut(s)	46, 200, 347, 463, 520, 542
BslFI	GGGAC	4 cut(s)	80, 391, 494, 514
BslI	CCNNNNNNNGG	3 cut(s)	199, 435, 584
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	4 cut(s)	80, 391, 494, 514
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	203, 291, 664, 747
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	533
Bsp1407I	TGTACA	2 cut(s)	51, 618
Bsp143I	GATC	4 cut(s)	189, 349, 649, 881
BspANI	GGCC	4 cut(s)	203, 291, 664, 747
BspCNI	CTCAG	2 cut(s)	651, 726
BspFNI	CGCG	2 cut(s)	404, 719
BspLI	GGNNCC	6 cut(s)	6, 96, 427, 529, 530, 883
BspOI	GCTAGC	1 cut(s)	692
BspPI	GGATC	5 cut(s)	184, 357, 657, 876, 889
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	462
BsrGI	TGTACA	2 cut(s)	51, 618
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	132, 232, 532
BssMI	GATC	4 cut(s)	189, 349, 649, 881
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	62, 638, 848
BstACI	GRCGYC	1 cut(s)	138
BstAUI	TGTACA	2 cut(s)	51, 618
BstC8I	GCNNGC	6 cut(s)	367, 402, 690, 694, 745, 749
BstDEI	CTNAG	2 cut(s)	659, 734
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	427, 574
BstFNI	CGCG	2 cut(s)	404, 719
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	4 cut(s)	192, 352, 652, 884
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	4 cut(s)	189, 349, 649, 881
BstMCI	CGRYCG	2 cut(s)	64, 292
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 305, 397, 410, 483, 664
BstNSI	RCATGY	2 cut(s)	625, 824
BstSCI	CCNGG	4 cut(s)	45, 198, 345, 519
BstUI	CGCG	2 cut(s)	404, 719
BstV1I	GCAGC	2 cut(s)	311, 844
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	189, 881
BstXI	CCANNNNNNTGG	2 cut(s)	239, 416
BstYI	RGATCY	2 cut(s)	189, 881
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	203, 291, 664, 747
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	799
BtsCI	GGATG	2 cut(s)	427, 574
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	6 cut(s)	367, 402, 690, 694, 745, 749
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	5 cut(s)	94, 202, 528, 745, 763
CseI	GACGC	2 cut(s)	119, 393
Csp6I	GTAC	5 cut(s)	52, 359, 619, 627, 754
CspAI	ACCGGT	1 cut(s)	462
CviAII	CATG	4 cut(s)	381, 622, 809, 821
CviQI	GTAC	5 cut(s)	52, 359, 619, 627, 754
DdeI	CTNAG	2 cut(s)	659, 734
DpnI	GATC	4 cut(s)	191, 351, 651, 883
DpnII	GATC	4 cut(s)	189, 349, 649, 881
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	3 cut(s)	94, 528, 763
Eco52I	CGGCCG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	3 cut(s)	94, 528, 763
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	384, 625, 812, 824
FaiI	YATR	9 cut(s)	68, 372, 382, 450, 473, 623, 759, 810, 822
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	4 cut(s)	80, 391, 494, 514
FatI	CATG	4 cut(s)	380, 621, 808, 820
FauI	CCCGC	7 cut(s)	166, 370, 470, 689, 715, 736, 779
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	5 cut(s)	300, 387, 665, 720, 858
FokI	GGATG	2 cut(s)	434, 561
Fsp4HI	GCNGC	5 cut(s)	300, 387, 665, 720, 858
FspBI	CTAG	2 cut(s)	414, 689
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	5 cut(s)	300, 387, 665, 720, 858
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	4 cut(s)	203, 291, 664, 747
HapII	CCGG	6 cut(s)	46, 200, 347, 463, 520, 542
HgaI	GACGC	2 cut(s)	119, 393
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	384, 625, 812, 824
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	254, 377, 431
HpaII	CCGG	6 cut(s)	46, 200, 347, 463, 520, 542
HphI	GGTGA	2 cut(s)	824, 880
Hpy166II	GTNNAC	3 cut(s)	52, 627, 796
Hpy188I	TCNGA	2 cut(s)	735, 844
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	52, 627, 796
Hpy99I	CGWCG	4 cut(s)	20, 290, 332, 800
HpyAV	CCTTC	5 cut(s)	111, 191, 271, 809, 895
HpyCH4III	ACNGT	3 cut(s)	62, 638, 848
HpyCH4IV	ACGT	2 cut(s)	138, 798
HpyCH4V	TGCA	2 cut(s)	127, 574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 305, 397, 410, 483, 664
HpyF3I	CTNAG	2 cut(s)	659, 734
HpySE526I	ACGT	2 cut(s)	138, 798
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	384, 625, 812, 824
HspAI	GCGC	1 cut(s)	389
KflI	GGGWCCC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	189, 349, 649, 881
LmnI	GCTCC	4 cut(s)	4, 216, 491, 805
Lsp1109I	GCAGC	2 cut(s)	311, 844
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	414, 689
MaeII	ACGT	2 cut(s)	138, 798
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	191, 351, 651, 883
MboI	GATC	4 cut(s)	189, 349, 649, 881
MboII	GAAGA	6 cut(s)	34, 169, 241, 386, 562, 712
MflI	RGATCY	2 cut(s)	189, 881
MluCI	AATT	5 cut(s)	32, 144, 496, 838, 875
MlyI	GAGTC	3 cut(s)	263, 371, 440
MmeI	TCCRAC	1 cut(s)	624
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	3 cut(s)	122, 237, 414
MspA1I	CMGCKG	3 cut(s)	302, 486, 751
MspI	CCGG	6 cut(s)	46, 200, 347, 463, 520, 542
MspR9I	CCNGG	4 cut(s)	47, 200, 347, 521
Mva1269I	GAATGC	1 cut(s)	859
MvnI	CGCG	2 cut(s)	404, 719
MwoI	GCNNNNNNNGC	6 cut(s)	167, 305, 397, 410, 483, 664
NciI	CCSGG	4 cut(s)	47, 200, 347, 521
NdeII	GATC	4 cut(s)	189, 349, 649, 881
NheI	GCTAGC	1 cut(s)	688
NlaIII	CATG	4 cut(s)	384, 625, 812, 824
NlaIV	GGNNCC	6 cut(s)	6, 96, 427, 529, 530, 883
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	2 cut(s)	625, 824
OliI	CACNNNNGTG	3 cut(s)	122, 237, 414
PciI	ACATGT	2 cut(s)	621, 820
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	859
PfoI	TCCNGGA	1 cut(s)	345
PinAI	ACCGGT	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	301, 388, 666, 721, 859
PleI	GAGTC	3 cut(s)	262, 371, 439
PpsI	GAGTC	3 cut(s)	262, 371, 439
PpuMI	RGGWCCY	3 cut(s)	94, 528, 763
PscI	ACATGT	2 cut(s)	621, 820
Psp5II	RGGWCCY	3 cut(s)	94, 528, 763
PspN4I	GGNNCC	6 cut(s)	6, 96, 427, 529, 530, 883
PspPI	GGNCC	5 cut(s)	94, 202, 528, 745, 763
PspPPI	RGGWCCY	3 cut(s)	94, 528, 763
PsuI	RGATCY	2 cut(s)	189, 881
PvuII	CAGCTG	2 cut(s)	302, 751
RsaI	GTAC	5 cut(s)	53, 360, 620, 628, 755
RsaNI	GTAC	5 cut(s)	52, 359, 619, 627, 754
RseI	CAYNNNNRTG	3 cut(s)	122, 237, 414
SalI	GTCGAC	1 cut(s)	794
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	5 cut(s)	300, 387, 665, 720, 858
Sau3AI	GATC	4 cut(s)	189, 349, 649, 881
Sau96I	GGNCC	5 cut(s)	94, 202, 528, 745, 763
SchI	GAGTC	3 cut(s)	263, 371, 440
ScrFI	CCNGG	4 cut(s)	47, 200, 347, 521
SetI	ASST	9 cut(s)	96, 141, 213, 231, 304, 694, 753, 768, 801
SfaNI	GCATC	1 cut(s)	583
SinI	GGWCC	3 cut(s)	94, 528, 763
SmiMI	CAYNNNNRTG	3 cut(s)	122, 237, 414
Sse9I	AATT	5 cut(s)	32, 144, 496, 838, 875
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	414, 689
StyD4I	CCNGG	4 cut(s)	45, 198, 345, 519
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	62, 638, 848
TaiI	ACGT	2 cut(s)	141, 801
TaqI	TCGA	4 cut(s)	104, 252, 330, 795
TasI	AATT	5 cut(s)	32, 144, 496, 838, 875
TatI	WGTACW	3 cut(s)	51, 618, 753
TauI	GCSGC	3 cut(s)	389, 667, 722
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	299, 857
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	387, 877
TspGWI	ACGGA	3 cut(s)	316, 567, 644
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	3 cut(s)	94, 528, 763
XapI	RAATTY	3 cut(s)	32, 496, 875
XceI	RCATGY	2 cut(s)	625, 824
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	2 cut(s)	414, 689
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.