Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

5515826 .. 5519450

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTGATGATCACAGCTCTTTCACCAAGGATTTATTGCCAAAGAAATCGCCTTTATTGCTTAGGACGATTGTCGTGTTGTTTGTAATGCTCTGTGGTGTCTATATATGCTCAGTTTGTTTAAAGCAAATCAGGACTGGTACCTCAATCAGATTCTTAAGCATCCCTGAGGTGATTCAAAAGCCGTGCCAGAAACCTTATATTGAACCGGAAGAAGCGCCTTATGTGCACTTCCCAAAGCCCACAACTTATAGCAGGGCTGAATGTGCGTGCAATCCTGTGAGATATTTTGCAATTTTCTCAATGCAGAGGTCTGGGAGTGGTTGGTTTGAGACGCTACTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTTAAAGTCAGGAGAAGTAACATGTCAACAATTTCAGAGACTTTGGACAGAGTGTACAATCTAGATTGGCTCAGTAGTGCCTCAAAGAATGAGTGCACAGCTGCAGTTGGCCTAAAGTGGATGCTTAATCAGGGATTGATGCATAATCATGAACAAATAGTGGAGTACTTCAACACTCGAGGTGTTGCGGCTATCTTTCTCTTTCGAAGAAATCTGCTGCGTAGGTTGATCTCTGTGCTCGCAAATACTTATGATCGAGATGTGAAGCTACTGAACGGAACCCACAAGTCTCACGTGCATTCTCATCAAGAGGCAGAGATACTTGCAAAATACAAGCCTACAATCAATACAACTTTGCTCTTAGCCGACCTGAAGCAAGTTGAGGATAGAACTGCCAAAGCATTTCAATATTTCAACAGCACCCGACATATTATCCTATATTATGAGGATGTTGTTAAAAACCGCAGTAAATTAAAAGACGTTCAAGATTTTCTCAAGGTTCCACAAAGAGATTTAAAGAGTCGTCAGGTGAAGATTCACAAAGGTTCATTGTCTAATCAGGTTGAGAATTGGGGTGATGTCCAAAAAGCACTTAATGGAACACATTATGAAAGCTTTCTCCATTCAGATCTTCGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

342

Amino Acids

39.31

Weight (kDa)

9.43

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1011
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	2 cut(s)	572, 847
AcuI	CTGAAG	1 cut(s)	776
AcvI	CACGTG	1 cut(s)	679
AfaI	GTAC	3 cut(s)	142, 440, 551
AflII	CTTAAG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	6 cut(s)	179, 206, 556, 791, 799, 869
AluBI	AGCT	5 cut(s)	18, 363, 485, 652, 999
AluI	AGCT	5 cut(s)	18, 363, 485, 652, 999
Alw21I	GWGCWC	3 cut(s)	231, 482, 624
Alw26I	GTCTC	3 cut(s)	326, 416, 678
Alw44I	GTGCAC	2 cut(s)	227, 478
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	2 cut(s)	227, 478
ApeKI	GCWGC	2 cut(s)	485, 601
Asp700I	GAANNNNTTC	1 cut(s)	999
Asp718I	GGTACC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	4 cut(s)	16, 184, 925, 971
AsuII	TTCGAA	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	561
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	2 cut(s)	231, 482
BanI	GGYRCC	1 cut(s)	140
BbrPI	CACGTG	1 cut(s)	679
Bbv12I	GWGCWC	3 cut(s)	231, 482, 624
BbvI	GCAGC	2 cut(s)	472, 588
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	326, 416, 678
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	3 cut(s)	486, 573, 602
BlsI	GCNGC	3 cut(s)	487, 574, 603
BmcAI	AGTACT	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	561
BmiI	GGNNCC	3 cut(s)	142, 664, 885
BmsI	GCATC	3 cut(s)	171, 495, 513
BoxI	GACNNNNGTC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
Bpu10I	CCTNAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	679
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	142
Bse21I	CCTNAGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	162, 510, 838
BseMII	CTCAG	3 cut(s)	126, 159, 469
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	2 cut(s)	231, 482
BseXI	GCAGC	2 cut(s)	472, 588
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	3 cut(s)	231, 482, 624
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	209
BsmAI	GTCTC	3 cut(s)	326, 416, 678
BsmBI	CGTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	589
Bsp1286I	GDGCHC	3 cut(s)	231, 482, 624
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	10, 612, 637, 1012
BspACI	CCGC	2 cut(s)	572, 847
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	125, 160, 468
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	142, 664, 885
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	1011
BspT104I	TTCGAA	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	10, 612, 637, 1012
BssT1I	CCWWGG	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	271, 624
BstDEI	CTNAG	5 cut(s)	62, 112, 168, 455, 745
BstF5I	GGATG	3 cut(s)	162, 510, 838
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	4 cut(s)	13, 615, 640, 1015
BstMAI	GTCTC	3 cut(s)	326, 416, 678
BstMBI	GATC	4 cut(s)	10, 612, 637, 1012
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 226, 266
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	2 cut(s)	231, 482
BstV1I	GCAGC	2 cut(s)	472, 588
BstX2I	RGATCY	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	1012
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	162, 510, 838
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	2 cut(s)	271, 624
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	220
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	141, 439, 550
CviAII	CATG	2 cut(s)	406, 533
CviQI	GTAC	3 cut(s)	141, 439, 550
DdeI	CTNAG	5 cut(s)	62, 112, 168, 455, 745
DpnI	GATC	4 cut(s)	12, 614, 639, 1014
DpnII	GATC	4 cut(s)	10, 612, 637, 1012
DraI	TTTAAA	2 cut(s)	123, 900
Eco130I	CCWWGG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	776
Eco72I	CACGTG	1 cut(s)	679
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	409, 536
FatI	CATG	2 cut(s)	405, 532
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	486, 573, 602
FokI	GGATG	3 cut(s)	149, 517, 845
Fsp4HI	GCNGC	3 cut(s)	486, 573, 602
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	486, 573, 602
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	409, 536
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	4 cut(s)	153, 175, 904, 919
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	4 cut(s)	16, 184, 925, 971
Hpy166II	GTNNAC	4 cut(s)	229, 411, 439, 480
Hpy188I	TCNGA	3 cut(s)	152, 421, 1012
Hpy188III	TCNNGA	7 cut(s)	133, 394, 446, 533, 641, 692, 869
Hpy8I	GTNNAC	4 cut(s)	229, 411, 439, 480
HpyCH4IV	ACGT	2 cut(s)	678, 864
HpyCH4V	TGCA	9 cut(s)	229, 273, 293, 307, 480, 488, 526, 682, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 226, 266
HpyF3I	CTNAG	5 cut(s)	62, 112, 168, 455, 745
HpySE526I	ACGT	2 cut(s)	678, 864
Hsp92II	CATG	2 cut(s)	409, 536
HspAI	GCGC	1 cut(s)	218
KpnI	GGTACC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 612, 637, 1012
Lsp1109I	GCAGC	2 cut(s)	472, 588
LweI	GCATC	3 cut(s)	171, 495, 513
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	678, 864
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	12, 614, 639, 1014
MboI	GATC	4 cut(s)	10, 612, 637, 1012
MboII	GAAGA	4 cut(s)	224, 603, 928, 1007
MflI	RGATCY	1 cut(s)	1012
MhlI	GDGCHC	3 cut(s)	231, 482, 624
MluCI	AATT	4 cut(s)	294, 414, 854, 952
MlyI	GAGTC	1 cut(s)	913
MnlI	CCTC	8 cut(s)	154, 163, 303, 475, 557, 688, 760, 823
Mph1103I	ATGCAT	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	999
MseI	TTAA	8 cut(s)	122, 158, 387, 510, 840, 857, 899, 978
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	157
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	682
MwoI	GCNNNNNNNGC	3 cut(s)	58, 226, 266
NdeII	GATC	4 cut(s)	10, 612, 637, 1012
NlaIII	CATG	2 cut(s)	409, 536
NlaIV	GGNNCC	3 cut(s)	142, 664, 885
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	589
PaeR7I	CTCGAG	1 cut(s)	561
PagI	TCATGA	1 cut(s)	532
PciI	ACATGT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	3 cut(s)	153, 175, 919
PkrI	GCNGC	3 cut(s)	487, 574, 603
PleI	GAGTC	1 cut(s)	912
PmaCI	CACGTG	1 cut(s)	679
PmlI	CACGTG	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	912
Ppu21I	YACGTR	1 cut(s)	679
PscI	ACATGT	1 cut(s)	405
PshAI	GACNNNNGTC	1 cut(s)	71
PspCI	CACGTG	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	142, 664, 885
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	1012
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	142, 440, 551
RsaNI	GTAC	3 cut(s)	141, 439, 550
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	8 cut(s)	122, 158, 387, 510, 840, 857, 899, 978
SatI	GCNGC	3 cut(s)	486, 573, 602
Sau3AI	GATC	4 cut(s)	10, 612, 637, 1012
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	913
SduI	GDGCHC	3 cut(s)	231, 482, 624
SfaNI	GCATC	3 cut(s)	171, 495, 513
SfcI	CTRYAG	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	589
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	157, 561, 878
SmoI	CTYRAG	3 cut(s)	157, 561, 878
Sse9I	AATT	4 cut(s)	294, 414, 854, 952
SsiI	CCGC	2 cut(s)	572, 847
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	681, 867
TaqI	TCGA	3 cut(s)	562, 589, 640
TasI	AATT	4 cut(s)	294, 414, 854, 952
TatI	WGTACW	2 cut(s)	438, 549
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	3 cut(s)	153, 175, 919
Tru1I	TTAA	8 cut(s)	122, 158, 387, 510, 840, 857, 899, 978
Tru9I	TTAA	8 cut(s)	122, 158, 387, 510, 840, 857, 899, 978
TseI	GCWGC	2 cut(s)	485, 601
TspDTI	ATGAA	3 cut(s)	549, 921, 1008
TspGWI	ACGGA	1 cut(s)	675
Vha464I	CTTAAG	1 cut(s)	157
VneI	GTGCAC	2 cut(s)	227, 478
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	1 cut(s)	446
ZrmI	AGTACT	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.