Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

55689586 .. 55693226

Gene Structure 3641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTGATGATCACTGCTCTTTCACCAAGGATATATTAAAGGGGCCAAAGAAATCGCCTTTGGTGCTGAGGACGATTGTCGTGTTGTTTGTAATGGTCTGTGGTGTCTATATATGCTCAATTTGTTTAAAGCAAATCAAGACCGGTACCACACTGAGATTCTTGAGCATCCCCGAGGTGATTCAAAGGCCGTGTCAGAAACCTGATATTGAACCGGAAGAAGCGCCTTATGTGCACTTCCCAAAGCCCACAACTTATAGCAGGGCTGAATGTGCGTGCAATCCTGTGAGATATTTTGCAATTTTCTCGATGCAGAGGTCTGGGAGTGGTTGGTTTGAGACGCTATTGAATAATCATACGAACATAAGCTCGAATGGGGAGATTTTCTCTGTTAAAGTCAGGAGAAGTAACATGTCAACAATTACAGAGGCTTTGGACAGAGTATACAATCTAGATTGGTTCAGTAGTGCCTCAAAGAATGAGTGCACAGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGATTGATGCAGAATCATGAACAAATAGTGGAGTACTTCAACACTCGAGGTGTTGCTGCTATCTTTCTCTTTCGAAGAAATCTGTTGCGTAGGTTGATCTCCGTGCTCGCAAATTCTTATGATCGAGAGGCTGAGATACTTGCAAAATACAAGCCTAAAATCAATGCAACTTTGCTTATAGCCAACCTGAAGCAAGTTGAGAATACAACTGCCAAAGCATTGGAATATTTCAAGAGCACCCGACATATTATCCTGTATTATGAGGATGTTGTTAAAAACCGCACTAAATTAAGAGACGTTCAAGATTTTCTCAAGGTTCCACAAAGGGATTTGAAGAGTCGTCAGGTGAAGATACACAAAGGTTCCTTGTCTAATCAGATTGAGAATTGGGGTGATGTCCAAAAGGCACTTAATGGAACACATTATGAAAGCTTTCTCCATGCAGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

324

Amino Acids

37.19

Weight (kDa)

9.34

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	802
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	148, 557
AflIII	ACRYGT	1 cut(s)	411
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	7 cut(s)	185, 212, 349, 562, 754, 824, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	369, 491, 954
AluI	AGCT	3 cut(s)	369, 491, 954
Alw21I	GWGCWC	4 cut(s)	237, 488, 630, 761
Alw26I	GTCTC	2 cut(s)	332, 810
Alw44I	GTGCAC	2 cut(s)	233, 484
Ama87I	CYCGRG	2 cut(s)	173, 567
AoxI	GGCC	2 cut(s)	44, 188
ApaLI	GTGCAC	2 cut(s)	233, 484
ApeKI	GCWGC	2 cut(s)	491, 578
ApoI	RAATTY	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsiGI	ACCGGT	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	954
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	16, 190, 880, 926
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	173, 567
BaeGI	GKGCMC	2 cut(s)	237, 488
BanI	GGYRCC	1 cut(s)	146
Bbv12I	GWGCWC	4 cut(s)	237, 488, 630, 761
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	478, 565
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	332, 810
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	2 cut(s)	492, 579
BlsI	GCNGC	2 cut(s)	493, 580
BmcAI	AGTACT	1 cut(s)	557
BmeT110I	CYCGRG	2 cut(s)	173, 567
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	45, 148, 840, 886
BmsI	GCATC	4 cut(s)	177, 300, 501, 519
BoxI	GACNNNNGTC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	595
BpuEI	CTTGAG	2 cut(s)	184, 818
BsaJI	CCNNGG	2 cut(s)	27, 174
BsaWI	WCCGGW	2 cut(s)	143, 214
Bse118I	RCCGGY	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	27, 174
BseGI	GGATG	3 cut(s)	168, 516, 793
BseMII	CTCAG	3 cut(s)	59, 146, 645
BseSI	GKGCMC	2 cut(s)	237, 488
BseXI	GCAGC	2 cut(s)	478, 565
BshFI	GGCC	2 cut(s)	46, 190
BshNI	GGYRCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	143
BsiHKAI	GWGCWC	4 cut(s)	237, 488, 630, 761
BsiHKCI	CYCGRG	2 cut(s)	173, 567
BsiSI	CCGG	2 cut(s)	144, 215
BsmAI	GTCTC	2 cut(s)	332, 810
BsmBI	CGTCTC	2 cut(s)	332, 810
BsnI	GGCC	2 cut(s)	46, 190
BsoBI	CYCGRG	2 cut(s)	173, 567
Bsp119I	TTCGAA	1 cut(s)	595
Bsp1286I	GDGCHC	4 cut(s)	237, 488, 630, 761
Bsp143I	GATC	3 cut(s)	10, 618, 643
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	2 cut(s)	46, 190
BspCNI	CTCAG	3 cut(s)	60, 147, 646
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	45, 148, 840, 886
BspMAI	CTGCAG	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	27, 174
BssMI	GATC	3 cut(s)	10, 618, 643
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	277, 630
BstDEI	CTNAG	3 cut(s)	68, 155, 654
BstF5I	GGATG	3 cut(s)	168, 516, 793
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	13, 621, 646
BstMAI	GTCTC	2 cut(s)	332, 810
BstMBI	GATC	3 cut(s)	10, 618, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
BstNSI	RCATGY	1 cut(s)	415
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	2 cut(s)	237, 488
BstV1I	GCAGC	2 cut(s)	478, 565
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	46, 190
BtsCI	GGATG	3 cut(s)	168, 516, 793
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 152
Cac8I	GCNNGC	2 cut(s)	277, 630
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	147, 556
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	3 cut(s)	412, 539, 962
CviQI	GTAC	2 cut(s)	147, 556
DdeI	CTNAG	3 cut(s)	68, 155, 654
DpnI	GATC	3 cut(s)	12, 620, 645
DpnII	GATC	3 cut(s)	10, 618, 643
DraI	TTTAAA	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	851
EarI	CTCTTC	1 cut(s)	851
Eco130I	CCWWGG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	2 cut(s)	173, 567
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	2 cut(s)	332, 810
FaeI	CATG	3 cut(s)	415, 542, 965
FatI	CATG	3 cut(s)	411, 538, 961
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	492, 579
FokI	GGATG	3 cut(s)	155, 523, 800
Fsp4HI	GCNGC	2 cut(s)	492, 579
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	492, 579
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	46, 190
HapII	CCGG	2 cut(s)	144, 215
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	415, 542, 965
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	4 cut(s)	159, 181, 535, 859
HpaII	CCGG	2 cut(s)	144, 215
HphI	GGTGA	4 cut(s)	16, 190, 880, 926
Hpy166II	GTNNAC	4 cut(s)	235, 417, 445, 486
Hpy188I	TCNGA	2 cut(s)	198, 900
Hpy188III	TCNNGA	9 cut(s)	139, 163, 307, 400, 452, 539, 647, 754, 824
Hpy8I	GTNNAC	4 cut(s)	235, 417, 445, 486
HpyCH4IV	ACGT	1 cut(s)	819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
HpyF3I	CTNAG	3 cut(s)	68, 155, 654
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	3 cut(s)	415, 542, 965
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 618, 643
Lsp1109I	GCAGC	2 cut(s)	478, 565
LweI	GCATC	4 cut(s)	177, 300, 501, 519
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	12, 620, 645
MboI	GATC	3 cut(s)	10, 618, 643
MboII	GAAGA	4 cut(s)	230, 609, 868, 883
MhlI	GDGCHC	4 cut(s)	237, 488, 630, 761
MluCI	AATT	6 cut(s)	120, 300, 420, 634, 809, 907
MlyI	GAGTC	1 cut(s)	868
MnlI	CCTC	8 cut(s)	63, 169, 309, 421, 481, 563, 643, 778
MroXI	GAANNNNTTC	1 cut(s)	954
MseI	TTAA	8 cut(s)	38, 128, 393, 503, 516, 795, 812, 933
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	144, 215
MwoI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
NdeII	GATC	3 cut(s)	10, 618, 643
NlaIII	CATG	3 cut(s)	415, 542, 965
NlaIV	GGNNCC	4 cut(s)	45, 148, 840, 886
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	567
PagI	TCATGA	1 cut(s)	538
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	954
PfeI	GAWTC	3 cut(s)	159, 181, 535
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	493, 580
PleI	GAGTC	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	867
PscI	ACATGT	1 cut(s)	411
PshAI	GACNNNNGTC	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	45, 148, 840, 886
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	148, 557
RsaNI	GTAC	2 cut(s)	147, 556
SaqAI	TTAA	8 cut(s)	38, 128, 393, 503, 516, 795, 812, 933
SatI	GCNGC	2 cut(s)	492, 579
Sau3AI	GATC	3 cut(s)	10, 618, 643
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	868
SduI	GDGCHC	4 cut(s)	237, 488, 630, 761
SfaNI	GCATC	4 cut(s)	177, 300, 501, 519
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	595
SlaI	CTCGAG	1 cut(s)	567
SmlI	CTYRAG	3 cut(s)	163, 567, 833
SmoI	CTYRAG	3 cut(s)	163, 567, 833
Sse9I	AATT	6 cut(s)	120, 300, 420, 634, 809, 907
SsiI	CCGC	1 cut(s)	802
SspI	AATATT	1 cut(s)	749
SspMI	CTAG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	5 cut(s)	308, 371, 568, 595, 646
TasI	AATT	6 cut(s)	120, 300, 420, 634, 809, 907
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	3 cut(s)	159, 181, 535
Tru1I	TTAA	8 cut(s)	38, 128, 393, 503, 516, 795, 812, 933
Tru9I	TTAA	8 cut(s)	38, 128, 393, 503, 516, 795, 812, 933
TscAI	CASTG	2 cut(s)	20, 159
TseI	GCWGC	2 cut(s)	491, 578
TspDTI	ATGAA	2 cut(s)	555, 963
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	20, 159
VneI	GTGCAC	2 cut(s)	233, 484
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	954
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.