Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

17494 .. 18706

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgatcaagttcttaaacatcaaggtgattgactacgacaacgaaccatgcccagatcctcatcttgagcaatgggaaatcccctatgtgcattacccaaaacctcgaacatttgagaggaatgaatgcgcctgcaatccggtacgctactttgcaatattgtcaatgcagagatcagggagtggatggtttgagacattgttgaataatcacactaatgtaagttctaacggagaaatcttttccatcccggataggagacgtaatgtttcttcaattttgaagaacatggataaagtatacaatctcgattggtttagtagtgcttccagaaatgagtgttctgctgctgttggattcaaatggatgcttaatcagggtttgatggagaaccatgaagagatagtgaagtacttcaagaaaagaggcgtgtctgcaatattcctcttccgaaggaacttactccgcagaatgatttctgtacatgcaaattcttatgataaagaagctaagcaactcaatggcactcacaagtcccatgtgcattctccattggaagctcaaatacttgcaaagtacaaacccaagcttaatgccacattactaatcccagagctgaagcaagacgaggagacagctgcgaaagctacacagtatttcaagaccactcggcacattgttctttactacgaggacgtgatcaataaccgcactaaactcaatgaaattcaaaagttccttgggttgccttatcgagagctcaagagccgtcaagttaagatacatacaacaccgttgtcgaaccaaatcgagaactgggaagatgttcagaagacactcaaaggaacatcatacgaaagcttcctcgcagactaccaagtttcttctttagcactactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

300

Amino Acids

35.07

Weight (kDa)

9.15

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	2 cut(s)	466, 709
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	490, 726
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	4 cut(s)	144, 413, 483, 578
AgsI	TTSAA	7 cut(s)	205, 276, 283, 361, 418, 661, 731
AjiI	CACGTC	1 cut(s)	697
AluBI	AGCT	8 cut(s)	509, 560, 589, 616, 638, 647, 760, 861
AluI	AGCT	8 cut(s)	509, 560, 589, 616, 638, 647, 760, 861
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	188, 253, 626
AlwI	GGATC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	347, 638
ApoI	RAATTY	2 cut(s)	490, 726
Asp700I	GAANNNNTTC	3 cut(s)	413, 475, 825
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	762
BarI	GAAGNNNNNNTAC	4 cut(s)	256, 288, 549, 581
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	2 cut(s)	334, 625
BccI	CCATC	3 cut(s)	180, 254, 379
BceAI	ACGGC	1 cut(s)	753
BclI	TGATCA	2 cut(s)	3, 699
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	3 cut(s)	188, 253, 626
BisI	GCNGC	2 cut(s)	348, 639
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	2 cut(s)	349, 640
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	697
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	826
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	826
BpiI	GAAGAC	1 cut(s)	839
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	86, 746
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	3 cut(s)	191, 246, 372
BseJI	GATNNNNATC	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	821
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	334, 625
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	140, 251
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	3 cut(s)	188, 253, 626
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	2 cut(s)	131, 544
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	3, 55, 173, 699
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	2 cut(s)	466, 709
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	821
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	4 cut(s)	3, 55, 173, 699
BssNAI	GTATAC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	739
Bst1107I	GTATAC	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	654, 795
Bst6I	CTCTTC	2 cut(s)	393, 452
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	191, 246, 372
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	6, 58, 176, 702
BstMAI	GTCTC	3 cut(s)	188, 253, 626
BstMBI	GATC	4 cut(s)	3, 55, 173, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	334, 625
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BstZ17I	GTATAC	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	191, 246, 372
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	4 cut(s)	143, 412, 482, 577
CviAII	CATG	5 cut(s)	48, 289, 395, 485, 539
CviJI	RGCY	9 cut(s)	509, 560, 589, 616, 638, 647, 760, 768, 861
CviKI_1	RGCY	9 cut(s)	509, 560, 589, 616, 638, 647, 760, 768, 861
CviQI	GTAC	4 cut(s)	143, 412, 482, 577
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	4 cut(s)	5, 57, 175, 701
DpnII	GATC	4 cut(s)	3, 55, 173, 699
Eam1104I	CTCTTC	2 cut(s)	393, 452
EarI	CTCTTC	2 cut(s)	393, 452
Ecl136II	GAGCTC	1 cut(s)	760
Eco130I	CCWWGG	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	739
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	5 cut(s)	51, 292, 398, 488, 542
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	5 cut(s)	47, 288, 394, 484, 538
FbaI	TGATCA	2 cut(s)	3, 699
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	348, 639
FokI	GGATG	3 cut(s)	198, 233, 379
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	348, 639
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	348, 639
HapII	CCGG	2 cut(s)	140, 251
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	51, 292, 398, 488, 542
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	587, 859
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	2 cut(s)	140, 251
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	452, 831
Hpy188III	TCNNGA	8 cut(s)	65, 308, 330, 418, 661, 755, 763, 811
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	654, 795
HpyCH4IV	ACGT	2 cut(s)	262, 696
HpyCH4V	TGCA	8 cut(s)	91, 135, 155, 169, 437, 488, 544, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	2 cut(s)	262, 696
Hsp92II	CATG	5 cut(s)	51, 292, 398, 488, 542
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	3, 699
Kzo9I	GATC	4 cut(s)	3, 55, 173, 699
LpnPI	CCDG	9 cut(s)	66, 145, 153, 162, 264, 343, 362, 624, 802
Lsp1109I	GCAGC	2 cut(s)	334, 625
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	2 cut(s)	262, 696
MalI	GATC	4 cut(s)	5, 57, 175, 701
MboI	GATC	4 cut(s)	3, 55, 173, 699
MboII	GAAGA	7 cut(s)	264, 295, 410, 439, 833, 844, 876
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	3 cut(s)	276, 490, 726
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	8 cut(s)	69, 111, 114, 419, 455, 622, 685, 875
MroXI	GAANNNNTTC	3 cut(s)	413, 475, 825
MseI	TTAA	4 cut(s)	14, 372, 591, 777
MslI	CAYNNNNRTG	2 cut(s)	23, 216
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	2 cut(s)	140, 251
MspR9I	CCNGG	1 cut(s)	251
Mva1269I	GAATGC	2 cut(s)	131, 544
MwoI	GCNNNNNNNGC	1 cut(s)	644
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	3, 55, 173, 699
NlaIII	CATG	5 cut(s)	51, 292, 398, 488, 542
NmeAIII	GCCGAG	1 cut(s)	649
NspI	RCATGY	1 cut(s)	488
PctI	GAATGC	2 cut(s)	131, 544
PdmI	GAANNNNTTC	3 cut(s)	413, 475, 825
PfeI	GAWTC	1 cut(s)	357
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	349, 640
Psp124BI	GAGCTC	1 cut(s)	762
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	4 cut(s)	144, 413, 483, 578
RsaNI	GTAC	4 cut(s)	143, 412, 482, 577
RseI	CAYNNNNRTG	2 cut(s)	23, 216
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	14, 372, 591, 777
SatI	GCNGC	2 cut(s)	348, 639
Sau3AI	GATC	4 cut(s)	3, 55, 173, 699
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	23, 216
SmlI	CTYRAG	2 cut(s)	65, 761
SmoI	CTYRAG	2 cut(s)	65, 761
Sse9I	AATT	3 cut(s)	276, 490, 726
SsiI	CCGC	2 cut(s)	466, 709
SspI	AATATT	2 cut(s)	159, 441
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	2 cut(s)	654, 795
TaiI	ACGT	2 cut(s)	265, 699
TaqI	TCGA	5 cut(s)	106, 309, 754, 800, 810
TasI	AATT	3 cut(s)	276, 490, 726
TatI	WGTACW	3 cut(s)	411, 481, 576
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	4 cut(s)	14, 372, 591, 777
Tru9I	TTAA	4 cut(s)	14, 372, 591, 777
TseI	GCWGC	2 cut(s)	347, 638
TspDTI	ATGAA	3 cut(s)	138, 411, 738
TspGWI	ACGGA	1 cut(s)	246
XapI	RAATTY	2 cut(s)	490, 726
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	3 cut(s)	413, 475, 825
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.