Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

3927406 .. 3929566

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATGAAGAACTGTGTTTCTTCAACCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTGAATAATCACACTAATGTAAGTTCTAACGGAGAAATCTTTTCGATCCCGGATAGGAGACGTAATGTTTCTTCAATTTTGAAGAACATGGATAAAGTATACAATCTCGATTGGTTTAGTAGTGCTTCCAGAAATGAGTGTTCTGCAGCTGTTGGATTCAAATGGATGCTTAATCAGGGTTTGATGGAGAACCATGAAGAGATAGTGAAGTACTTCAAGAAAAGAGGCGTGTCTGCAATATTCCTCTTCCGAAGGAACTTACTCCGCAGAATGATTTCTGTACATGCAAATTCTTATGATAAAGAAGCTAAGCAACTCAATGGCACTCACAAGTCCCATGTGCATTCTCCATTGGAAGCTCAAATACTTGCAAAGTACAAACCCAAGCTTAACGCCACATTACTAATCCCGGAGCTGAAGCAAGACGAGGAGACAGCTGCGAAAGCTACACAATATTTCAAGACCACTCGGCACATTGTTCTTTTCTACGAGGACGTGAACAATAACCGCACTAAACTCAATGAAGTTCAAAAGTTCCTTGGGTTGCCTTATCGAGAGCTCAAGAGCCGTCAAGTTAAGATACATACAACACCGTTGTCAAACCAAATCGAGAACTGGGAAGATGTTCAGAAGACACTCAAAGGAACATCATACGAAAGCTTCCTCGCAGACTATCAACCAGTTCAACTGCTTTCTGTAAATTTAGTAGAACAAAAGAAATTTTGTACATTCAACATCTTTGAGGGCTCTACTGCATACTTGCCCTTTGGGAAAGAATTTGAACTTCGTATCTTTTATGGACCAGAGATGAGTCTGACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

294

Amino Acids

34.25

Weight (kDa)

8.91

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	325, 568
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	4 cut(s)	349, 760, 779, 836
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	4 cut(s)	272, 342, 437, 787
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	9 cut(s)	209, 368, 419, 448, 475, 497, 506, 619, 720
AluI	AGCT	9 cut(s)	209, 368, 419, 448, 475, 497, 506, 619, 720
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	3 cut(s)	47, 112, 485
AlwI	GGATC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	206, 497
ApoI	RAATTY	4 cut(s)	349, 760, 779, 836
Asp700I	GAANNNNTTC	3 cut(s)	272, 334, 684
AspS9I	GGNCC	1 cut(s)	860
AsuC2I	CCSGG	2 cut(s)	110, 470
AvaII	GGWCC	1 cut(s)	860
BanII	GRGCYC	2 cut(s)	621, 809
BarI	GAAGNNNNNNTAC	4 cut(s)	115, 147, 408, 440
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	218, 484
BccI	CCATC	2 cut(s)	39, 238
BceAI	ACGGC	1 cut(s)	612
BcnI	CCSGG	2 cut(s)	110, 470
BcoDI	GTCTC	3 cut(s)	47, 112, 485
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	207, 498
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	2 cut(s)	208, 499
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	110, 470
Bme18I	GGWCC	1 cut(s)	860
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	860
BmrFI	CCNGG	2 cut(s)	110, 470
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	698
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	110, 470
BsaJI	CCNNGG	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	680, 740
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	3 cut(s)	10, 50, 231
BseNI	ACTGG	2 cut(s)	680, 740
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	218, 484
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	110, 470
BslFI	GGGAC	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	47, 112, 485
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	621, 809
Bsp1407I	TGTACA	2 cut(s)	340, 785
Bsp143I	GATC	2 cut(s)	32, 105
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	2 cut(s)	325, 568
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	100
BsrGI	TGTACA	2 cut(s)	340, 785
BsrI	ACTGG	2 cut(s)	680, 740
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	32, 105
BssNAI	GTATAC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	15, 654
Bst6I	CTCTTC	2 cut(s)	252, 311
BstAUI	TGTACA	2 cut(s)	340, 785
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	10, 50, 231
BstKTI	GATC	2 cut(s)	35, 108
BstMAI	GTCTC	3 cut(s)	47, 112, 485
BstMBI	GATC	2 cut(s)	32, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	108, 468
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	218, 484
BstV2I	GAAGAC	1 cut(s)	698
BstZ17I	GTATAC	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	10, 50, 231
Cfr13I	GGNCC	1 cut(s)	860
Csp6I	GTAC	4 cut(s)	271, 341, 436, 786
CviAII	CATG	4 cut(s)	148, 254, 344, 398
CviQI	GTAC	4 cut(s)	271, 341, 436, 786
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	34, 107
DpnII	GATC	2 cut(s)	32, 105
Eam1104I	CTCTTC	2 cut(s)	252, 311
EarI	CTCTTC	2 cut(s)	252, 311
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	621, 809
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	621, 809
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	4 cut(s)	151, 257, 347, 401
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	4 cut(s)	147, 253, 343, 397
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	207, 498
FokI	GGATG	3 cut(s)	17, 57, 238
FriOI	GRGCYC	2 cut(s)	621, 809
Fsp4HI	GCNGC	2 cut(s)	207, 498
GluI	GCNGC	2 cut(s)	207, 498
HapII	CCGG	2 cut(s)	110, 470
Hin1II	CATG	4 cut(s)	151, 257, 347, 401
HindIII	AAGCTT	2 cut(s)	446, 718
HinfI	GANTC	2 cut(s)	216, 871
HpaII	CCGG	2 cut(s)	110, 470
Hpy166II	GTNNAC	2 cut(s)	160, 559
Hpy188I	TCNGA	3 cut(s)	311, 690, 876
Hpy188III	TCNNGA	7 cut(s)	167, 189, 277, 520, 614, 622, 670
Hpy8I	GTNNAC	2 cut(s)	160, 559
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	2 cut(s)	15, 654
HpyCH4IV	ACGT	2 cut(s)	121, 555
HpyCH4V	TGCA	6 cut(s)	206, 296, 347, 403, 431, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	121, 555
Hsp92II	CATG	4 cut(s)	151, 257, 347, 401
Kzo9I	GATC	2 cut(s)	32, 105
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	9 cut(s)	21, 41, 123, 202, 221, 483, 661, 753, 876
Lsp1109I	GCAGC	2 cut(s)	218, 484
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	2 cut(s)	121, 555
MalI	GATC	2 cut(s)	34, 107
MboI	GATC	2 cut(s)	32, 105
MboII	GAAGA	8 cut(s)	13, 20, 123, 154, 269, 298, 692, 703
MhlI	GDGCHC	2 cut(s)	621, 809
MluCI	AATT	5 cut(s)	135, 349, 760, 779, 836
MlyI	GAGTC	1 cut(s)	880
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	278, 314, 481, 544, 734, 796
MroXI	GAANNNNTTC	3 cut(s)	272, 334, 684
MseI	TTAA	3 cut(s)	231, 450, 636
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	2 cut(s)	209, 497
MspI	CCGG	2 cut(s)	110, 470
MspR9I	CCNGG	2 cut(s)	110, 470
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	2 cut(s)	110, 470
NdeII	GATC	2 cut(s)	32, 105
NlaIII	CATG	4 cut(s)	151, 257, 347, 401
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	347
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	3 cut(s)	272, 334, 684
PfeI	GAWTC	1 cut(s)	216
PfoI	TCCNGGA	2 cut(s)	108, 468
PkrI	GCNGC	2 cut(s)	208, 499
PleI	GAGTC	1 cut(s)	879
PpsI	GAGTC	1 cut(s)	879
Psp124BI	GAGCTC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	2 cut(s)	209, 497
RsaI	GTAC	4 cut(s)	272, 342, 437, 787
RsaNI	GTAC	4 cut(s)	271, 341, 436, 786
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	231, 450, 636
SatI	GCNGC	2 cut(s)	207, 498
Sau3AI	GATC	2 cut(s)	32, 105
Sau96I	GGNCC	1 cut(s)	860
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	2 cut(s)	110, 470
SduI	GDGCHC	2 cut(s)	621, 809
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	5 cut(s)	135, 349, 760, 779, 836
SsiI	CCGC	2 cut(s)	325, 568
SspI	AATATT	2 cut(s)	300, 515
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	108, 468
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	15, 654
TaiI	ACGT	2 cut(s)	124, 558
TaqI	TCGA	4 cut(s)	104, 168, 613, 669
TasI	AATT	5 cut(s)	135, 349, 760, 779, 836
TatI	WGTACW	4 cut(s)	270, 340, 435, 785
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	3 cut(s)	231, 450, 636
Tru9I	TTAA	3 cut(s)	231, 450, 636
TseI	GCWGC	2 cut(s)	206, 497
TspDTI	ATGAA	3 cut(s)	21, 270, 597
TspGWI	ACGGA	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	4 cut(s)	349, 760, 779, 836
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	3 cut(s)	272, 334, 684
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.