Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

44456442 .. 44458820

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1187600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCCGATTTATCTTTCTTCTGCTCACAGAATGGACGATGAAGAAATCTGTTTATTCGATAAGGATACAATTGTCACTAAAGCTCCCAAGAAATCTCCATTAATACTGAGGATGGTGGTGCTGCTTTTTGCAATGGTTTGTGGAGTTTTTATTTGCTTAGTCTGTTTGAAGCAAATAAACACTCAGACTAAGACCAAATTATTGAACATCGTAGCGATTAATCACCGCGACAAAATTAATCAACCGTGCCAAGTTCCCGATGATCTTGAGCAATCGGAAATCAGCTATCTGCATTACCCTAAACCTCAAACCTTCAAAAGGAGGGAATGCGTCTGCAATCCCGTCCGCTACTTTGCCATATTGTCAATGCAAAGATCTGGGAGTGGATGGTTTGAAACATTGTTGAATAGTCACATTAATGTAAGCTCAAATGGGGAGATATTTTCGGTTCAAGAACGGAGGGTTAATGTTTCTTCGATTTTGAAGAACATGGATAAAGTATATAATCTCGACTGGTTTAGTAGCGCCTCCAAGAATGAGTGTTCAGCTGCCGTTGGATTCAAGTGGATGCTTAACCAGGGTTTGATGGAGAATCACCAAGAGATAGTGAAGTACTTCGAGGAAAAAGGAGTGTCTGCAATATTCCTCTTCAGAAAAAACTTGCTCCGCAGAAAGATTTCTGTACTTGCAAATTCATATGATAAATATGCTAAGCAACTCAATGGCACTCACAAGTCACATACCCATTCTCCATCGGAGGCTCAAATACTTGCAAAGTACAAGCCCAATATTAATGCCACATTGCTAATTCCCGATCTTAAACAAGATGAGGCGGAAGCTGCCAAAGCCATAGAATATTTCAAGACTACTCGCCATGTTGTTATTTACTACGAGGAGGTTATCAACAACCGTACAAAACTTGATGAGGTTCAAGATTTCCTAAGGTTGCCACACAGGGAGCTCAGGAGCCGTCAGGTTAAGATACATACGACGCCATTGTCGAAACAAGTCGAGAACTGGGAAGATGTGGAGAAAGTACTCAGAGGGACGTCGTACGAGAGTTTCATGCATGCAGACTATCAACTGCATTCTTCAGTTTCACCCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

370

Amino Acids

42.74

Weight (kDa)

8.92

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	997
AatII	GACGTC	1 cut(s)	1052
AccII	CGCG	1 cut(s)	228
AciI	CCGC	4 cut(s)	226, 346, 667, 833
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	2 cut(s)	634, 1077
AcyI	GRCGYC	2 cut(s)	992, 1049
AfaI	GTAC	6 cut(s)	614, 684, 779, 913, 1038, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	318
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	6 cut(s)	83, 285, 426, 548, 839, 961
AluI	AGCT	6 cut(s)	83, 285, 426, 548, 839, 961
Alw21I	GWGCWC	1 cut(s)	963
ApeKI	GCWGC	3 cut(s)	121, 548, 839
ApoI	RAATTY	1 cut(s)	691
AseI	ATTAAT	5 cut(s)	101, 219, 237, 417, 792
Asp700I	GAANNNNTTC	2 cut(s)	614, 676
AspLEI	GCGC	1 cut(s)	527
AsuHPI	GGTGA	3 cut(s)	215, 587, 1092
AxyI	CCTNAGG	1 cut(s)	941
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BanII	GRGCYC	1 cut(s)	963
Bbv12I	GWGCWC	1 cut(s)	963
BbvI	GCAGC	3 cut(s)	108, 535, 826
BccI	CCATC	4 cut(s)	106, 381, 580, 760
BceAI	ACGGC	2 cut(s)	536, 954
BciT130I	CCWGG	1 cut(s)	578
BciVI	GTATCC	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	3 cut(s)	122, 549, 840
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	3 cut(s)	123, 550, 841
BmcAI	AGTACT	2 cut(s)	614, 1038
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	968
BmrFI	CCNGG	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	1027
BmsI	GCATC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	1027
Bpu10I	CCTNAGC	1 cut(s)	962
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	287
BsaHI	GRCGYC	2 cut(s)	992, 1049
BsaJI	CCNNGG	1 cut(s)	577
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 733, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	518, 1022
Bse21I	CCTNAGG	1 cut(s)	941
Bse3DI	GCAATG	2 cut(s)	138, 800
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	117, 392, 573
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	2 cut(s)	138, 800
BseMII	CTCAG	4 cut(s)	98, 197, 976, 1054
BseNI	ACTGG	2 cut(s)	518, 1022
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	3 cut(s)	108, 535, 826
Bsh1236I	CGCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	963
BsiWI	CGTACG	1 cut(s)	1053
BslFI	GGGAC	1 cut(s)	1060
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	1060
BsmI	GAATGC	2 cut(s)	332, 1087
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp143I	GATC	3 cut(s)	262, 374, 814
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	4 cut(s)	226, 346, 667, 833
BspCNI	CTCAG	4 cut(s)	99, 196, 975, 1053
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	138, 800
BsrI	ACTGG	2 cut(s)	518, 1022
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	262, 374, 814
BssNI	GRCGYC	2 cut(s)	992, 1049
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	246, 911
Bst6I	CTCTTC	1 cut(s)	653
BstACI	GRCGYC	2 cut(s)	992, 1049
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	8 cut(s)	107, 157, 183, 189, 711, 941, 962, 1040
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstF5I	GGATG	3 cut(s)	117, 392, 573
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	3 cut(s)	265, 377, 817
BstMBI	GATC	3 cut(s)	262, 374, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	839, 845
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	1073
BstSCI	CCNGG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	108, 535, 826
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	941
BsuI	GTATCC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	117, 392, 573
Cac8I	GCNNGC	1 cut(s)	1071
CfoI	GCGC	1 cut(s)	527
CseI	GACGC	2 cut(s)	319, 1000
Csp6I	GTAC	6 cut(s)	613, 683, 778, 912, 1037, 1054
CviAII	CATG	4 cut(s)	490, 875, 1066, 1070
CviQI	GTAC	6 cut(s)	613, 683, 778, 912, 1037, 1054
DdeI	CTNAG	8 cut(s)	107, 157, 183, 189, 711, 941, 962, 1040
DpnI	GATC	3 cut(s)	264, 376, 816
DpnII	GATC	3 cut(s)	262, 374, 814
DrdI	GACNNNNNNGTC	1 cut(s)	997
DseDI	GACNNNNNNGTC	1 cut(s)	997
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
EciI	GGCGGA	1 cut(s)	848
Ecl136II	GAGCTC	1 cut(s)	961
Eco24I	GRGCYC	1 cut(s)	963
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	2 cut(s)	634, 1077
Eco81I	CCTNAGG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	961
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	1071
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	4 cut(s)	493, 878, 1069, 1073
FaqI	GGGAC	1 cut(s)	1060
FatI	CATG	4 cut(s)	489, 874, 1065, 1069
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	122, 549, 840
FokI	GGATG	3 cut(s)	124, 399, 580
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	3 cut(s)	122, 549, 840
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	3 cut(s)	122, 549, 840
HaeII	RGCGCY	1 cut(s)	528
HgaI	GACGC	2 cut(s)	319, 1000
HhaI	GCGC	1 cut(s)	527
Hin1I	GRCGYC	2 cut(s)	992, 1049
Hin1II	CATG	4 cut(s)	493, 878, 1069, 1073
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HinfI	GANTC	2 cut(s)	558, 592
HphI	GGTGA	3 cut(s)	215, 587, 1092
Hpy188I	TCNGA	5 cut(s)	186, 277, 653, 757, 1043
Hpy188III	TCNNGA	9 cut(s)	257, 266, 452, 509, 812, 862, 932, 964, 1012
Hpy99I	CGWCG	2 cut(s)	994, 1054
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	2 cut(s)	246, 911
HpyCH4IV	ACGT	1 cut(s)	1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	839, 845
HpyF3I	CTNAG	8 cut(s)	107, 157, 183, 189, 711, 941, 962, 1040
HpySE526I	ACGT	1 cut(s)	1049
Hsp92I	GRCGYC	2 cut(s)	992, 1049
Hsp92II	CATG	4 cut(s)	493, 878, 1069, 1073
HspAI	GCGC	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	262, 374, 814
LmnI	GCTCC	4 cut(s)	88, 669, 958, 966
LpnPI	CCDG	8 cut(s)	363, 499, 563, 590, 940, 949, 959, 1003
Lsp1109I	GCAGC	3 cut(s)	108, 535, 826
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	3 cut(s)	73, 410, 735
MalI	GATC	3 cut(s)	264, 376, 816
MboI	GATC	3 cut(s)	262, 374, 814
MboII	GAAGA	7 cut(s)	9, 53, 465, 496, 640, 1034, 1083
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	963
MluCI	AATT	5 cut(s)	69, 197, 234, 691, 807
MmeI	TCCRAC	1 cut(s)	535
Mph1103I	ATGCAT	1 cut(s)	1071
MroXI	GAANNNNTTC	2 cut(s)	614, 676
MseI	TTAA	9 cut(s)	101, 219, 237, 417, 465, 573, 792, 819, 978
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	578
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	2 cut(s)	332, 1087
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	839, 845
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	3 cut(s)	262, 374, 814
NlaIII	CATG	4 cut(s)	493, 878, 1069, 1073
NlaIV	GGNNCC	1 cut(s)	968
NmuCI	GTSAC	3 cut(s)	73, 410, 735
NsiI	ATGCAT	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	1073
PaeI	GCATGC	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	998
PctI	GAATGC	2 cut(s)	332, 1087
PdmI	GAANNNNTTC	2 cut(s)	614, 676
PfeI	GAWTC	2 cut(s)	558, 592
Pfl23II	CGTACG	1 cut(s)	1053
PkrI	GCNGC	3 cut(s)	123, 550, 841
PshBI	ATTAAT	5 cut(s)	101, 219, 237, 417, 792
Psp124BI	GAGCTC	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspLI	CGTACG	1 cut(s)	1053
PspN4I	GGNNCC	1 cut(s)	968
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	6 cut(s)	614, 684, 779, 913, 1038, 1055
RsaNI	GTAC	6 cut(s)	613, 683, 778, 912, 1037, 1054
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	963
SaqAI	TTAA	9 cut(s)	101, 219, 237, 417, 465, 573, 792, 819, 978
SatI	GCNGC	3 cut(s)	122, 549, 840
Sau3AI	GATC	3 cut(s)	262, 374, 814
ScaI	AGTACT	2 cut(s)	614, 1038
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	963
SfaNI	GCATC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	1073
Sse9I	AATT	5 cut(s)	69, 197, 234, 691, 807
SsiI	CCGC	4 cut(s)	226, 346, 667, 833
SspI	AATATT	3 cut(s)	642, 790, 857
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	246, 911
TaiI	ACGT	1 cut(s)	1052
TaqI	TCGA	6 cut(s)	57, 476, 510, 618, 1001, 1011
TasI	AATT	5 cut(s)	69, 197, 234, 691, 807
TatI	WGTACW	4 cut(s)	612, 682, 777, 1036
TfiI	GAWTC	2 cut(s)	558, 592
Tru1I	TTAA	9 cut(s)	101, 219, 237, 417, 465, 573, 792, 819, 978
Tru9I	TTAA	9 cut(s)	101, 219, 237, 417, 465, 573, 792, 819, 978
TseFI	GTSAC	3 cut(s)	73, 410, 735
TseI	GCWGC	3 cut(s)	121, 548, 839
Tsp45I	GTSAC	3 cut(s)	73, 410, 735
TspDTI	ATGAA	3 cut(s)	54, 684, 1054
TspGWI	ACGGA	1 cut(s)	472
VspI	ATTAAT	5 cut(s)	101, 219, 237, 417, 792
XagI	CCTNNNNNAGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	1073
XmnI	GAANNNNTTC	2 cut(s)	614, 676
ZraI	GACGTC	1 cut(s)	1050
ZrmI	AGTACT	2 cut(s)	614, 1038
Zsp2I	ATGCAT	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.