Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

25806942 .. 25809397

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAACCACAGATACACTCGTCATTAAGACTCCCAAGAAAACTCCACTAATATTGACGATGGTGGTATTACTTCTTACAATGGTTTGTGGAGTTCATATCTGCATATTCTTTTTGAAGCATTTAAACACTAGTAAAACGATGATCAAGTTCTTAAACATCGAGGTGATTGACCACCACAATGAATCATGCCCTGTTCCTCATCTTGAGCAATGGGAAATCCCCTATGTGCATTATCCACAACCTCAAACGTTTAAGAGGAATGAATGCTCCTGCAATCCGGTACGCTACTTTGCAATATTGTCAATGCAGAGATCAGGGAGTGGATGGTTTGAGACACTGTTGAATAATCACACTAATGTAAGTTCTAACGGAGAAATTTTTTCAATCCCGGATAGGAGGCGTAATGTTTCTTCAATTTTGAAGAACATGGATAAAGTATACAATCTCGATTGGTTTAGTAGTGCTTCCAAGAATGAGTGTTCTGCAGCTGTTGGATTCAAATGGATGCTTAATCAGGGTTTGATGGAGAATCATGAAGAGATAGTGAAATACTTCAAGAAAAGAGGAGTGTCTGCAATATTTCTCCTCAGAAGGAACTTACTCCGCAGAATGATTTCTGTGCATGCCAATATTTATGATAAAGATACTAAGCAACTCAATGGCACTCATAAGTCCCATGTACATTCTCCATTGGAAGCTCAAATACTTGCAACATACAAACCCAAGCTTAATGCCACATTACTAATCCCAGAGCTGAAGCAAGACGAGGAGACGGCTGCGAAAGCTATGCAATATTTCAATACCACTCGCCACATTGTTGTCTACTACGAGGACGTGATCAACAACCGCACTAAACTCAATGAAGTTCAAGACTTCCTTAGGTTGCCTCATAGAGAGCTCAGGAGCCGTCAAGTTAAGATACATACAACACCATTGTCGAACCAAGTCCAGAACTGGGGTGATGTTCAGAAGACACTGAAAGGAACATCATACGAGAGCTTCCTCGCAGACTATCAAATTTCTTCTTCGGCACCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

348

Amino Acids

40.21

Weight (kDa)

9.22

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1033
AccI	GTMKAC	2 cut(s)	441, 825
AciI	CCGC	2 cut(s)	607, 850
AclI	AACGTT	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	378, 1020
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	2 cut(s)	285, 684
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	9 cut(s)	118, 346, 387, 417, 424, 502, 559, 802, 872
AhlI	ACTAGT	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	838
AluBI	AGCT	7 cut(s)	491, 701, 730, 757, 788, 901, 1002
AluI	AGCT	7 cut(s)	491, 701, 730, 757, 788, 901, 1002
Alw21I	GWGCWC	1 cut(s)	903
Alw26I	GTCTC	2 cut(s)	329, 767
ApeKI	GCWGC	2 cut(s)	488, 779
ApoI	RAATTY	2 cut(s)	378, 1020
Asp700I	GAANNNNTTC	2 cut(s)	554, 616
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	178, 974
AxyI	CCTNAGG	1 cut(s)	881
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	903
BarI	GAAGNNNNNNTAC	4 cut(s)	397, 429, 690, 722
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	500, 766
BccI	CCATC	3 cut(s)	55, 321, 520
BceAI	ACGGC	2 cut(s)	792, 894
BcgI	CGANNNNNNTGC	2 cut(s)	772, 806
BclI	TGATCA	2 cut(s)	144, 840
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	329, 767
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	489, 780
BlsI	GCNGC	2 cut(s)	490, 781
Bme1390I	CCNGG	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	838
BmiI	GGNNCC	2 cut(s)	908, 1035
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	967
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	967
BpiI	GAAGAC	1 cut(s)	980
Bpu10I	CCTNAGC	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	1 cut(s)	962
Bse21I	CCTNAGG	1 cut(s)	881
Bse3DI	GCAATG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	332, 513
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	604, 916
BseNI	ACTGG	1 cut(s)	962
BseRI	GAGGAG	3 cut(s)	578, 582, 785
BseXI	GCAGC	2 cut(s)	500, 766
BshNI	GGYRCC	1 cut(s)	1033
BsiHKAI	GWGCWC	1 cut(s)	903
BsiSI	CCGG	2 cut(s)	281, 392
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	2 cut(s)	329, 767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	144, 314, 840
BspACI	CCGC	2 cut(s)	607, 850
BspCNI	CTCAG	2 cut(s)	603, 915
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	908, 1035
BspMAI	CTGCAG	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	1033
BsrDI	GCAATG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	962
BssMI	GATC	3 cut(s)	144, 314, 840
BssNAI	GTATAC	1 cut(s)	442
Bst1107I	GTATAC	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	4 cut(s)	590, 651, 881, 902
BstF5I	GGATG	2 cut(s)	332, 513
BstKTI	GATC	3 cut(s)	147, 317, 843
BstMAI	GTCTC	2 cut(s)	329, 767
BstMBI	GATC	3 cut(s)	144, 314, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	500, 766
BstV2I	GAAGAC	1 cut(s)	980
BstZ17I	GTATAC	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	881
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	2 cut(s)	332, 513
BtsIMutI	CAGTG	2 cut(s)	338, 977
Cac8I	GCNNGC	1 cut(s)	627
CciI	TCATGA	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	284, 683
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	5 cut(s)	189, 430, 536, 626, 680
CviJI	RGCY	9 cut(s)	491, 701, 730, 757, 779, 788, 901, 909, 1002
CviKI_1	RGCY	9 cut(s)	491, 701, 730, 757, 779, 788, 901, 909, 1002
CviQI	GTAC	2 cut(s)	284, 683
DdeI	CTNAG	4 cut(s)	590, 651, 881, 902
DpnI	GATC	3 cut(s)	146, 316, 842
DpnII	GATC	3 cut(s)	144, 314, 840
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	903
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	779
Eco81I	CCTNAGG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	901
EcoT38I	GRGCYC	1 cut(s)	903
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	5 cut(s)	192, 433, 539, 629, 683
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	188, 429, 535, 625, 679
FbaI	TGATCA	2 cut(s)	144, 840
FblI	GTMKAC	2 cut(s)	441, 825
Fnu4HI	GCNGC	2 cut(s)	489, 780
FokI	GGATG	2 cut(s)	339, 520
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	2 cut(s)	489, 780
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	489, 780
HapII	CCGG	2 cut(s)	281, 392
Hin1II	CATG	5 cut(s)	192, 433, 539, 629, 683
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	4 cut(s)	31, 185, 498, 532
HpaII	CCGG	2 cut(s)	281, 392
HphI	GGTGA	2 cut(s)	178, 974
Hpy166II	GTNNAC	2 cut(s)	442, 826
Hpy188I	TCNGA	2 cut(s)	593, 972
Hpy188III	TCNNGA	7 cut(s)	206, 449, 536, 559, 872, 904, 952
Hpy8I	GTNNAC	2 cut(s)	442, 826
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	251, 837
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	4 cut(s)	590, 651, 881, 902
HpySE526I	ACGT	2 cut(s)	251, 837
Hsp92II	CATG	5 cut(s)	192, 433, 539, 629, 683
Ksp22I	TGATCA	2 cut(s)	144, 840
Kzo9I	GATC	3 cut(s)	144, 314, 840
LmnI	GCTCC	2 cut(s)	275, 906
Lsp1109I	GCAGC	2 cut(s)	500, 766
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	251, 837
MalI	GATC	3 cut(s)	146, 316, 842
MboI	GATC	3 cut(s)	144, 314, 840
MboII	GAAGA	6 cut(s)	405, 436, 551, 985, 1017, 1020
MhlI	GDGCHC	1 cut(s)	903
MluCI	AATT	3 cut(s)	378, 417, 1020
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	2 cut(s)	554, 616
MseI	TTAA	7 cut(s)	27, 125, 155, 255, 513, 732, 918
MslI	CAYNNNNRTG	3 cut(s)	164, 180, 357
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	281, 392
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	3 cut(s)	144, 314, 840
NlaIII	CATG	5 cut(s)	192, 433, 539, 629, 683
NlaIV	GGNNCC	2 cut(s)	908, 1035
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	1 cut(s)	535
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	554, 616
PfeI	GAWTC	3 cut(s)	185, 498, 532
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	490, 781
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	908, 1035
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	285, 684
RsaNI	GTAC	2 cut(s)	284, 683
RseI	CAYNNNNRTG	3 cut(s)	164, 180, 357
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	7 cut(s)	27, 125, 155, 255, 513, 732, 918
SatI	GCNGC	2 cut(s)	489, 780
Sau3AI	GATC	3 cut(s)	144, 314, 840
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	3 cut(s)	164, 180, 357
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	131
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	3 cut(s)	378, 417, 1020
SsiI	CCGC	2 cut(s)	607, 850
SspI	AATATT	5 cut(s)	54, 300, 582, 634, 797
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	254, 840
TaqI	TCGA	3 cut(s)	162, 450, 941
TasI	AATT	3 cut(s)	378, 417, 1020
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	185, 498, 532
Tru1I	TTAA	7 cut(s)	27, 125, 155, 255, 513, 732, 918
Tru9I	TTAA	7 cut(s)	27, 125, 155, 255, 513, 732, 918
TscAI	CASTG	2 cut(s)	345, 984
TseI	GCWGC	2 cut(s)	488, 779
TspDTI	ATGAA	5 cut(s)	86, 198, 279, 552, 879
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	345, 984
XapI	RAATTY	2 cut(s)	378, 1020
XceI	RCATGY	1 cut(s)	629
XmiI	GTMKAC	2 cut(s)	441, 825
XmnI	GAANNNNTTC	2 cut(s)	554, 616
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.