Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

3955981 .. 3957874

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCCAATTTATCTTTCTTCTCATCATCTCAAGATAGATGAAGAACTGTGTTTCTTCAACCAGGATACACTTGTCATTAAGGCTCCTAAGAAAACTCCACTAATATTGAGGATGGTGGTAATACTTTTTACAATGGCTCTTGGTGTTTATATTTGCCTAGTCTGTTTGAAGCAAATAAATCCTAACAAAACGATGATCAAGTTCTTAAACATCAAGGTGATTGACTACGGCAACGAATCATGCCCTGATCCACATCTTGAGCAATGGGAAATCCCCTATGTGCATTACCCAAAACCTCGAACATTTGAGAGGAATGAATGCGCCTGCAATCCGGTACGCTACTTTGCAATATTGTCAATGCAGAGATCAGGGAGTGGATGGTTTGAGACACTGTTGAATAATCACACTAATGTAAGTTCTAACGGAGAAATCTTTTCGATCCCGGATAGGAGACGTAATGTTTCTTCAATTTTGAAGAACATGGATAAAGTATACAATCTCGATTGGTTTAGTAGTGCTTCCAGAAACGAGTGTTCTGCAGCCGTCGGATTCAAATGGATGCTTAATCAGGGTTTGATGGAGAACCATGAAAGGATAGTGAAGTACTTCAAGAAAAGAGGCGTGTCTGCAATATTCCTCTTCCGAAGGAACTTACTCCGCAGAATGATTTCTGTACATGCAAATTCTTATGATAAAGAAGCTAAGCAACTCAATGGCACTCACAAGTCCCATGTTCATTCTCCATTGGAAGCTCAAATACTTGCAAAGTACAAACCCAAGCTTAATGCCACATTACTAATCCCAGAGCTGAAGCAAGACGAGGAAACAGCTGCGAAAGCTACACAATATTTCAAGACCGCTCGGCACATTGTTCTTTACTACGAGGACGTGATCAATAACCGCACTAAACTCTATGAAGTTCAAAAGTTCCTTGGGTTGCCTTATGGAGAGCTCAAGAGCCGTCAAGTTAAGATACATACAACACCGTTGTCGAACCAAATCGAGAACTGGGAAGATGTTCAGAAGACACTCAAAGGAACATCATACGAAAGCTTCCTCGCAGACTATCAAGTTTCTTCTTTAGCACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

365

Amino Acids

42.27

Weight (kDa)

9.27

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	3 cut(s)	658, 858, 901
AclWI	GGATC	2 cut(s)	242, 433
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	4 cut(s)	336, 605, 675, 770
AgsI	TTSAA	9 cut(s)	58, 169, 397, 468, 475, 553, 610, 853, 923
AjiI	CACGTC	1 cut(s)	889
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	1 cut(s)	30
AluBI	AGCT	8 cut(s)	701, 752, 781, 808, 830, 839, 952, 1053
AluI	AGCT	8 cut(s)	701, 752, 781, 808, 830, 839, 952, 1053
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	2 cut(s)	380, 445
AlwI	GGATC	2 cut(s)	242, 433
ApeKI	GCWGC	2 cut(s)	539, 830
ApoI	RAATTY	1 cut(s)	682
Asp700I	GAANNNNTTC	3 cut(s)	605, 667, 1017
AspLEI	GCGC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BanII	GRGCYC	1 cut(s)	954
BarI	GAAGNNNNNNTAC	4 cut(s)	448, 480, 741, 773
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	551, 817
BccI	CCATC	3 cut(s)	106, 372, 571
BceAI	ACGGC	3 cut(s)	244, 527, 945
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	2 cut(s)	195, 891
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	380, 445
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	540, 831
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	2 cut(s)	541, 832
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	2 cut(s)	62, 443
BmgBI	CACGTC	1 cut(s)	889
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	62, 443
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	1 cut(s)	549
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	1 cut(s)	1031
Bpu1102I	GCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	3 cut(s)	14, 278, 938
BpuMI	CCSGG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	931
BsaWI	WCCGGW	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	1013
Bse3DI	GCAATG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	3 cut(s)	117, 383, 564
BseJI	GATNNNNATC	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	1013
BseXI	GCAGC	2 cut(s)	551, 817
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	332, 443
BslFI	GGGAC	1 cut(s)	712
BsmAI	GTCTC	2 cut(s)	380, 445
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp1407I	TGTACA	1 cut(s)	673
Bsp143I	GATC	5 cut(s)	195, 247, 365, 438, 891
Bsp1720I	GCTNAGC	1 cut(s)	702
BspACI	CCGC	3 cut(s)	658, 858, 901
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	242, 433
BsrBI	CCGCTC	1 cut(s)	860
BsrDI	GCAATG	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	1013
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	5 cut(s)	195, 247, 365, 438, 891
BssNAI	GTATAC	1 cut(s)	493
BssT1I	CCWWGG	1 cut(s)	931
Bst1107I	GTATAC	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	48, 393, 987
Bst6I	CTCTTC	1 cut(s)	644
BstAUI	TGTACA	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	87, 702
BstF5I	GGATG	3 cut(s)	117, 383, 564
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	5 cut(s)	198, 250, 368, 441, 894
BstMAI	GTCTC	2 cut(s)	380, 445
BstMBI	GATC	5 cut(s)	195, 247, 365, 438, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	60, 441
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	551, 817
BstV2I	GAAGAC	1 cut(s)	1031
BstZ17I	GTATAC	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	117, 383, 564
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	323
Csp6I	GTAC	4 cut(s)	335, 604, 674, 769
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	5 cut(s)	240, 481, 587, 677, 731
CviQI	GTAC	4 cut(s)	335, 604, 674, 769
DdeI	CTNAG	2 cut(s)	87, 702
DpnI	GATC	5 cut(s)	197, 249, 367, 440, 893
DpnII	GATC	5 cut(s)	195, 247, 365, 438, 891
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	931
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	5 cut(s)	243, 484, 590, 680, 734
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	5 cut(s)	239, 480, 586, 676, 730
FbaI	TGATCA	2 cut(s)	195, 891
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	540, 831
FokI	GGATG	3 cut(s)	124, 390, 571
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	2 cut(s)	540, 831
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	540, 831
HapII	CCGG	2 cut(s)	332, 443
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	5 cut(s)	243, 484, 590, 680, 734
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	2 cut(s)	779, 1051
HinfI	GANTC	2 cut(s)	236, 549
HpaII	CCGG	2 cut(s)	332, 443
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	3 cut(s)	548, 644, 1023
Hpy188III	TCNNGA	8 cut(s)	31, 257, 500, 522, 610, 853, 955, 1003
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	1 cut(s)	639
HpyCH4III	ACNGT	3 cut(s)	48, 393, 987
HpyCH4IV	ACGT	2 cut(s)	454, 888
HpyCH4V	TGCA	8 cut(s)	283, 327, 347, 361, 539, 629, 680, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	2 cut(s)	87, 702
HpySE526I	ACGT	2 cut(s)	454, 888
Hsp92II	CATG	5 cut(s)	243, 484, 590, 680, 734
HspAI	GCGC	1 cut(s)	321
Ksp22I	TGATCA	2 cut(s)	195, 891
Kzo9I	GATC	5 cut(s)	195, 247, 365, 438, 891
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	551, 817
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	454, 888
MalI	GATC	5 cut(s)	197, 249, 367, 440, 893
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	5 cut(s)	195, 247, 365, 438, 891
MboII	GAAGA	9 cut(s)	9, 46, 53, 456, 487, 631, 1025, 1036, 1068
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	3 cut(s)	6, 468, 682
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	8 cut(s)	102, 303, 306, 611, 647, 814, 877, 1067
MroXI	GAANNNNTTC	3 cut(s)	605, 667, 1017
MseI	TTAA	5 cut(s)	78, 206, 564, 783, 969
MslI	CAYNNNNRTG	2 cut(s)	215, 408
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	2 cut(s)	332, 443
MspR9I	CCNGG	2 cut(s)	62, 443
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	5 cut(s)	195, 247, 365, 438, 891
NlaIII	CATG	5 cut(s)	243, 484, 590, 680, 734
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	841
NspI	RCATGY	1 cut(s)	680
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	3 cut(s)	605, 667, 1017
PfeI	GAWTC	2 cut(s)	236, 549
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	541, 832
Psp124BI	GAGCTC	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	4 cut(s)	336, 605, 675, 770
RsaNI	GTAC	4 cut(s)	335, 604, 674, 769
RseI	CAYNNNNRTG	2 cut(s)	215, 408
SacI	GAGCTC	1 cut(s)	954
SaqAI	TTAA	5 cut(s)	78, 206, 564, 783, 969
SatI	GCNGC	2 cut(s)	540, 831
Sau3AI	GATC	5 cut(s)	195, 247, 365, 438, 891
ScaI	AGTACT	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	62, 443
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	215, 408
SmlI	CTYRAG	3 cut(s)	29, 257, 953
SmoI	CTYRAG	3 cut(s)	29, 257, 953
Sse9I	AATT	3 cut(s)	6, 468, 682
SsiI	CCGC	3 cut(s)	658, 858, 901
SspI	AATATT	4 cut(s)	105, 351, 633, 848
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	954
StyD4I	CCNGG	2 cut(s)	60, 441
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	3 cut(s)	48, 393, 987
TaiI	ACGT	2 cut(s)	457, 891
TaqI	TCGA	5 cut(s)	298, 437, 501, 992, 1002
TasI	AATT	3 cut(s)	6, 468, 682
TatI	WGTACW	3 cut(s)	603, 673, 768
TfiI	GAWTC	2 cut(s)	236, 549
Tru1I	TTAA	5 cut(s)	78, 206, 564, 783, 969
Tru9I	TTAA	5 cut(s)	78, 206, 564, 783, 969
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	539, 830
TspDTI	ATGAA	5 cut(s)	54, 330, 603, 725, 930
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	3 cut(s)	605, 667, 1017
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.