Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

7038535 .. 7040700

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGACGATGAAGAAATCATTTTATTCGATAAGGATACAATCGTTACTAAAGCTCCCAAGAAATCTCCATTAATACTGAGGATGGTGGTGCTGCTTTTTGCAATGGTTTGTGGAGTTTTTATTTGCTTAGTCTGTTTGAAGCAAATAAACACTCAGACTAAGACCAAATTATTGAACATCGTAGCGATTAATCACCGCGACCAAATTAATCAACCGTGCCAAGTTCCCGATGATCATGAGCAATCGGAAATCAGCTATCTGCATTACCCTAAACCTCAAACCTTCAAAAGGAGGGAATGCGTCTGCAATCCCGTCCGCTACTTTGCCATATTGTCAAAGCAAAGATCTGGGAGTGGATGGTTTGAAACATTGTTGAATAGTCACATTAATGTAAGCTCAAATGGGGAGATATTTTCGGTTCAAGATCGGAGGGTTAATGTTTCTTCGATTTTGAAGAACATGGATAAAGTATATAATCTTGACTGGTTTAGTAGTGCCTCCAAGAATGAGTGTTCAGCTGCCGTTGGATTCAAGTGGATGCTTAACCAGGGTTTGATGGAGAATCACCAAGAGATAGTGAAGTACTTCAAGGAAAAAGGAGTGTCTGCAATATTCCTCTTCAGAAAAAACTTACTCCGCAGAAAGATTTCTGTACTTGCAAATTCATATGATAAAGATGCTAAGCAACTCAATGGCACCCACAAGTCACATACCCATTCTCCATTGGAGGCTCAAATACTTGCAAAGTACAAGCCCAAGATTAATGCCACATTGCTAATTCCCGATCTTAAACAAGATGAGGAGGAAGCTGCCAAAGCCATTGAATATTTCAAGACTACTCGCCATATTGTTGTTTACTACGAGGAGGTTATCAACAACCGTACTAAACTTGATGAGGTTCAAGATTTCCTAAGGTTGCCACACAGGGAGCTCAAGAGCCGTCAGGTTAAGATACATACGACGTCATTGTCGAAACAAGTCGAGAACTGGGAAGATGTAGAGAAAGCACTCAGAGGGACGTCGTACGAGAGTTTCATGCATGCAGACTATCAACAGCATTCTTCAGTTCACCCACTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

361

Amino Acids

41.74

Weight (kDa)

8.95

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	967
AatII	GACGTC	2 cut(s)	965, 1022
AccB1I	GGYRCC	1 cut(s)	695
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	196, 316, 637
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	604, 1047
AcyI	GRCGYC	2 cut(s)	962, 1019
AfaI	GTAC	5 cut(s)	584, 654, 749, 883, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	6 cut(s)	53, 255, 396, 518, 809, 931
AluI	AGCT	6 cut(s)	53, 255, 396, 518, 809, 931
Alw21I	GWGCWC	1 cut(s)	933
ApeKI	GCWGC	3 cut(s)	91, 518, 809
ApoI	RAATTY	1 cut(s)	661
AseI	ATTAAT	5 cut(s)	71, 189, 207, 387, 762
Asp700I	GAANNNNTTC	2 cut(s)	584, 646
AsuHPI	GGTGA	3 cut(s)	185, 557, 1061
AxyI	CCTNAGG	1 cut(s)	911
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanI	GGYRCC	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	3 cut(s)	78, 505, 796
BccI	CCATC	3 cut(s)	76, 351, 550
BceAI	ACGGC	2 cut(s)	506, 924
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	92, 519, 810
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	3 cut(s)	93, 520, 811
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	697
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	997
BmsI	GCATC	2 cut(s)	528, 667
BmuI	ACTGGG	1 cut(s)	997
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	917
BsaHI	GRCGYC	2 cut(s)	962, 1019
BsaJI	CCNNGG	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 703, 733
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	488, 992
Bse21I	CCTNAGG	1 cut(s)	911
Bse3DI	GCAATG	2 cut(s)	108, 770
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	3 cut(s)	87, 362, 543
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	2 cut(s)	108, 770
BseMII	CTCAG	3 cut(s)	68, 167, 1024
BseNI	ACTGG	2 cut(s)	488, 992
BseRI	GAGGAG	2 cut(s)	815, 878
BseXI	GCAGC	3 cut(s)	78, 505, 796
Bsh1236I	CGCG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	695
BsiHKAI	GWGCWC	1 cut(s)	933
BsiWI	CGTACG	1 cut(s)	1023
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	2 cut(s)	302, 1057
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	4 cut(s)	232, 344, 424, 784
Bsp1720I	GCTNAGC	1 cut(s)	681
BspACI	CCGC	3 cut(s)	196, 316, 637
BspCNI	CTCAG	3 cut(s)	69, 166, 1023
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	697
BspT107I	GGYRCC	1 cut(s)	695
BsrDI	GCAATG	2 cut(s)	108, 770
BsrI	ACTGG	2 cut(s)	488, 992
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	232, 344, 424, 784
BssNI	GRCGYC	2 cut(s)	962, 1019
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	216, 881
Bst6I	CTCTTC	1 cut(s)	623
BstACI	GRCGYC	2 cut(s)	962, 1019
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	7 cut(s)	77, 127, 153, 159, 681, 911, 1010
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	87, 362, 543
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	4 cut(s)	235, 347, 427, 787
BstMBI	GATC	4 cut(s)	232, 344, 424, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	815
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	78, 505, 796
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
Bsu36I	CCTNAGG	1 cut(s)	911
BsuI	GTATCC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	87, 362, 543
Cac8I	GCNNGC	1 cut(s)	1041
CciI	TCATGA	1 cut(s)	235
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	5 cut(s)	583, 653, 748, 882, 1024
CviAII	CATG	4 cut(s)	236, 460, 1036, 1040
CviQI	GTAC	5 cut(s)	583, 653, 748, 882, 1024
DdeI	CTNAG	7 cut(s)	77, 127, 153, 159, 681, 911, 1010
DpnI	GATC	4 cut(s)	234, 346, 426, 786
DpnII	GATC	4 cut(s)	232, 344, 424, 784
DrdI	GACNNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	967
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Ecl136II	GAGCTC	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	933
Eco53kI	GAGCTC	1 cut(s)	931
Eco57I	CTGAAG	2 cut(s)	604, 1047
Eco81I	CCTNAGG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	931
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	1041
EcoT38I	GRGCYC	1 cut(s)	933
FaeI	CATG	4 cut(s)	239, 463, 1039, 1043
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	4 cut(s)	235, 459, 1035, 1039
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	92, 519, 810
FokI	GGATG	3 cut(s)	94, 369, 550
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	3 cut(s)	92, 519, 810
GluI	GCNGC	3 cut(s)	92, 519, 810
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	2 cut(s)	962, 1019
Hin1II	CATG	4 cut(s)	239, 463, 1039, 1043
HinfI	GANTC	2 cut(s)	528, 562
HphI	GGTGA	3 cut(s)	185, 557, 1061
Hpy166II	GTNNAC	2 cut(s)	856, 1069
Hpy188I	TCNGA	5 cut(s)	156, 247, 429, 623, 1013
Hpy188III	TCNNGA	9 cut(s)	227, 236, 422, 479, 782, 832, 902, 934, 982
Hpy8I	GTNNAC	2 cut(s)	856, 1069
Hpy99I	CGWCG	2 cut(s)	964, 1024
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	216, 881
HpyCH4IV	ACGT	2 cut(s)	962, 1019
HpyCH4V	TGCA	8 cut(s)	101, 262, 306, 608, 659, 743, 1039, 1043
HpyF10VI	GCNNNNNNNGC	1 cut(s)	815
HpyF3I	CTNAG	7 cut(s)	77, 127, 153, 159, 681, 911, 1010
HpySE526I	ACGT	2 cut(s)	962, 1019
Hsp92I	GRCGYC	2 cut(s)	962, 1019
Hsp92II	CATG	4 cut(s)	239, 463, 1039, 1043
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	232, 344, 424, 784
LmnI	GCTCC	2 cut(s)	58, 928
LpnPI	CCDG	7 cut(s)	333, 469, 533, 560, 910, 929, 973
Lsp1109I	GCAGC	3 cut(s)	78, 505, 796
LweI	GCATC	2 cut(s)	528, 667
MaeII	ACGT	2 cut(s)	962, 1019
MaeIII	GTNAC	3 cut(s)	43, 380, 705
MalI	GATC	4 cut(s)	234, 346, 426, 786
MboI	GATC	4 cut(s)	232, 344, 424, 784
MboII	GAAGA	6 cut(s)	23, 435, 466, 610, 1004, 1053
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	5 cut(s)	167, 204, 661, 777, 1077
MmeI	TCCRAC	1 cut(s)	505
Mph1103I	ATGCAT	1 cut(s)	1041
MroXI	GAANNNNTTC	2 cut(s)	584, 646
MseI	TTAA	9 cut(s)	71, 189, 207, 387, 435, 543, 762, 789, 948
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	302, 1057
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	815
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	232, 344, 424, 784
NlaIII	CATG	4 cut(s)	239, 463, 1039, 1043
NlaIV	GGNNCC	1 cut(s)	697
NmuCI	GTSAC	2 cut(s)	380, 705
NsiI	ATGCAT	1 cut(s)	1041
NspI	RCATGY	1 cut(s)	1043
PaeI	GCATGC	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	968
PctI	GAATGC	2 cut(s)	302, 1057
PdmI	GAANNNNTTC	2 cut(s)	584, 646
PfeI	GAWTC	2 cut(s)	528, 562
Pfl23II	CGTACG	1 cut(s)	1023
PkrI	GCNGC	3 cut(s)	93, 520, 811
PshBI	ATTAAT	5 cut(s)	71, 189, 207, 387, 762
Psp124BI	GAGCTC	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspLI	CGTACG	1 cut(s)	1023
PspN4I	GGNNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	5 cut(s)	584, 654, 749, 883, 1025
RsaNI	GTAC	5 cut(s)	583, 653, 748, 882, 1024
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	933
SaqAI	TTAA	9 cut(s)	71, 189, 207, 387, 435, 543, 762, 789, 948
SatI	GCNGC	3 cut(s)	92, 519, 810
Sau3AI	GATC	4 cut(s)	232, 344, 424, 784
ScaI	AGTACT	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	2 cut(s)	528, 667
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SphI	GCATGC	1 cut(s)	1043
Sse9I	AATT	5 cut(s)	167, 204, 661, 777, 1077
SsiI	CCGC	3 cut(s)	196, 316, 637
SspI	AATATT	2 cut(s)	612, 827
SstI	GAGCTC	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	216, 881
TaiI	ACGT	2 cut(s)	965, 1022
TaqI	TCGA	4 cut(s)	27, 446, 971, 981
TasI	AATT	5 cut(s)	167, 204, 661, 777, 1077
TatI	WGTACW	3 cut(s)	582, 652, 747
TfiI	GAWTC	2 cut(s)	528, 562
Tru1I	TTAA	9 cut(s)	71, 189, 207, 387, 435, 543, 762, 789, 948
Tru9I	TTAA	9 cut(s)	71, 189, 207, 387, 435, 543, 762, 789, 948
TseFI	GTSAC	2 cut(s)	380, 705
TseI	GCWGC	3 cut(s)	91, 518, 809
Tsp45I	GTSAC	2 cut(s)	380, 705
TspDTI	ATGAA	3 cut(s)	24, 654, 1024
VspI	ATTAAT	5 cut(s)	71, 189, 207, 387, 762
XagI	CCTNNNNNAGG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	1043
XmnI	GAANNNNTTC	2 cut(s)	584, 646
ZraI	GACGTC	2 cut(s)	963, 1020
ZrmI	AGTACT	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.