Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018893.1

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2661

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018893.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

gatatattaaagacgccaaagaaatcgcctttggtgctgaggacgattgtcgtgttgtttgtaatggtctgtggtgtctatatatgctcgatttgtttaaagcaaatcaagactggtaccacactcagattcttaagcatccccgaggtgattcaaaggccttgccagaaaccagatattgaaccggaagaagcgccttatgtgcacttcccaaagcccacaacttatagcagggccgaatgtgcgtgcaatcctgtgagatattttgcaattttctcgatgcagaggtctgggagtggttggtttgagacgctattgaataatcatactaacataagctcaaatggggagattttctctgttaaagtcaggagaagtaacatgtctacaattacagagactttggacagagtatacaatctagattggttcagtagtgcctcaaagaatgagtgcacagctgcagttggcttaaagtggatgcttaatcagggattgatgcagaatcatgaacaaatagtggagtacttcaacactcgaggtgttgctgctatctttctctttcgaagaaatctgttgcgtaggttgatctccgtgcttgcaaattcttatgatcgagaggcgaagccactgaatggaacccacaaatctcacgtgcactctcatcaagaggctgagatacttgcaaaatacaagcctaaaatcaacgcaactttgcttatagccaacctgaagcaagttgagaatacaactgccaaagcattggaatatttcaagaacacccgacatattatcctgtattatgaggatgttgttaaaaaccgcactaaattaagagacgttcaagattttctcaaggttccacaaagggatttgaagagtcgtcaagtgaagatacacaaaggctccttgtctaatcagattgagaattggggtgatgtccaaaaggcacttaatggaacacattatgaaagctttctccatgcagatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

331

Amino Acids

38.05

Weight (kDa)

9.49

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	2 cut(s)	386, 414
AciI	CCGC	1 cut(s)	823
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	752
AcvI	CACGTG	1 cut(s)	655
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	118, 527
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflII	CTTAAG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	7 cut(s)	155, 182, 319, 532, 775, 845, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	339, 461, 975
AluI	AGCT	3 cut(s)	339, 461, 975
Alw21I	GWGCWC	3 cut(s)	207, 458, 660
Alw26I	GTCTC	3 cut(s)	302, 392, 831
Alw44I	GTGCAC	3 cut(s)	203, 454, 656
Ama87I	CYCGRG	2 cut(s)	143, 537
AoxI	GGCC	2 cut(s)	158, 234
ApaLI	GTGCAC	3 cut(s)	203, 454, 656
ApeKI	GCWGC	2 cut(s)	461, 548
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	975
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	160, 947
AsuII	TTCGAA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	143, 537
BaeGI	GKGCMC	3 cut(s)	207, 458, 660
BanI	GGYRCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	655
Bbv12I	GWGCWC	3 cut(s)	207, 458, 660
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	448, 535
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BcoDI	GTCTC	3 cut(s)	302, 392, 831
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	133
BisI	GCNGC	2 cut(s)	462, 549
BlsI	GCNGC	2 cut(s)	463, 550
BmcAI	AGTACT	1 cut(s)	527
BmeT110I	CYCGRG	2 cut(s)	143, 537
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	4 cut(s)	118, 640, 861, 907
BmsI	GCATC	4 cut(s)	147, 270, 471, 489
BoxI	GACNNNNGTC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	839
BsaAI	YACGTR	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	138, 486, 814
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	29, 139, 666
BseNI	ACTGG	1 cut(s)	118
BseSI	GKGCMC	3 cut(s)	207, 458, 660
BseXI	GCAGC	2 cut(s)	448, 535
BshFI	GGCC	2 cut(s)	160, 236
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	3 cut(s)	207, 458, 660
BsiHKCI	CYCGRG	2 cut(s)	143, 537
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	302, 392, 831
BsmBI	CGTCTC	2 cut(s)	302, 831
BsnI	GGCC	2 cut(s)	160, 236
BsoBI	CYCGRG	2 cut(s)	143, 537
Bsp119I	TTCGAA	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	207, 458, 660
Bsp143I	GATC	2 cut(s)	588, 613
BspACI	CCGC	1 cut(s)	823
BspANI	GGCC	2 cut(s)	160, 236
BspCNI	CTCAG	3 cut(s)	30, 138, 667
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	118, 640, 861, 907
BspMAI	CTGCAG	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	588, 613
BssNAI	GTATAC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	14
Bst1107I	GTATAC	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	872
BstACI	GRCGYC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	655
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	247, 600
BstDEI	CTNAG	3 cut(s)	38, 125, 675
BstF5I	GGATG	3 cut(s)	138, 486, 814
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	591, 616
BstMAI	GTCTC	3 cut(s)	302, 392, 831
BstMBI	GATC	2 cut(s)	588, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 202, 242
BstNSI	RCATGY	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	3 cut(s)	207, 458, 660
BstV1I	GCAGC	2 cut(s)	448, 535
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	160, 236
BtsCI	GGATG	3 cut(s)	138, 486, 814
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	2 cut(s)	247, 600
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	2 cut(s)	22, 319
Csp6I	GTAC	2 cut(s)	117, 526
CviAII	CATG	3 cut(s)	382, 509, 983
CviQI	GTAC	2 cut(s)	117, 526
DdeI	CTNAG	3 cut(s)	38, 125, 675
DpnI	GATC	2 cut(s)	590, 615
DpnII	GATC	2 cut(s)	588, 613
DraI	TTTAAA	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
Eco147I	AGGCCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	752
Eco72I	CACGTG	1 cut(s)	655
Eco88I	CYCGRG	2 cut(s)	143, 537
Esp3I	CGTCTC	2 cut(s)	302, 831
FaeI	CATG	3 cut(s)	385, 512, 986
FatI	CATG	3 cut(s)	381, 508, 982
FblI	GTMKAC	2 cut(s)	386, 414
Fnu4HI	GCNGC	2 cut(s)	462, 549
FokI	GGATG	3 cut(s)	125, 493, 821
Fsp4HI	GCNGC	2 cut(s)	462, 549
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	462, 549
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	160, 236
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	2 cut(s)	22, 319
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	385, 512, 986
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	4 cut(s)	129, 151, 505, 880
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	160, 947
Hpy166II	GTNNAC	5 cut(s)	205, 387, 415, 456, 658
Hpy188I	TCNGA	2 cut(s)	128, 921
Hpy188III	TCNNGA	9 cut(s)	109, 277, 370, 422, 509, 617, 668, 775, 845
Hpy8I	GTNNAC	5 cut(s)	205, 387, 415, 456, 658
HpyCH4IV	ACGT	2 cut(s)	654, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 202, 242
HpyF3I	CTNAG	3 cut(s)	38, 125, 675
HpySE526I	ACGT	2 cut(s)	654, 840
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	385, 512, 986
HspAI	GCGC	1 cut(s)	194
KpnI	GGTACC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	588, 613
LmnI	GCTCC	1 cut(s)	911
Lsp1109I	GCAGC	2 cut(s)	448, 535
LweI	GCATC	4 cut(s)	147, 270, 471, 489
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	654, 840
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	590, 615
MboI	GATC	2 cut(s)	588, 613
MboII	GAAGA	4 cut(s)	200, 579, 889, 904
MhlI	GDGCHC	3 cut(s)	207, 458, 660
MluCI	AATT	5 cut(s)	270, 390, 604, 830, 928
MlyI	GAGTC	1 cut(s)	889
MnlI	CCTC	8 cut(s)	33, 139, 279, 451, 533, 613, 664, 799
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	9 cut(s)	8, 98, 134, 363, 473, 486, 816, 833, 954
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	133
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	34, 202, 242
NdeII	GATC	2 cut(s)	588, 613
NlaIII	CATG	3 cut(s)	385, 512, 986
NlaIV	GGNNCC	4 cut(s)	118, 640, 861, 907
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	565
PaeR7I	CTCGAG	1 cut(s)	537
PagI	TCATGA	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	129, 151, 505
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	463, 550
PleI	GAGTC	1 cut(s)	888
PmaCI	CACGTG	1 cut(s)	655
PmlI	CACGTG	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	888
Ppu21I	YACGTR	1 cut(s)	655
PscI	ACATGT	1 cut(s)	381
PshAI	GACNNNNGTC	1 cut(s)	47
PspCI	CACGTG	1 cut(s)	655
PspN4I	GGNNCC	4 cut(s)	118, 640, 861, 907
PspPI	GGNCC	1 cut(s)	234
PspXI	VCTCGAGB	1 cut(s)	537
PstI	CTGCAG	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	118, 527
RsaNI	GTAC	2 cut(s)	117, 526
SaqAI	TTAA	9 cut(s)	8, 98, 134, 363, 473, 486, 816, 833, 954
SatI	GCNGC	2 cut(s)	462, 549
Sau3AI	GATC	2 cut(s)	588, 613
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	1 cut(s)	889
SduI	GDGCHC	3 cut(s)	207, 458, 660
SfaNI	GCATC	4 cut(s)	147, 270, 471, 489
SfcI	CTRYAG	1 cut(s)	462
Sfr274I	CTCGAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	565
SlaI	CTCGAG	1 cut(s)	537
SmlI	CTYRAG	3 cut(s)	133, 537, 854
SmoI	CTYRAG	3 cut(s)	133, 537, 854
Sse9I	AATT	5 cut(s)	270, 390, 604, 830, 928
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	823
SspI	AATATT	1 cut(s)	770
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	657, 843
TaqI	TCGA	5 cut(s)	89, 278, 538, 565, 616
TasI	AATT	5 cut(s)	270, 390, 604, 830, 928
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	129, 151, 505
Tru1I	TTAA	9 cut(s)	8, 98, 134, 363, 473, 486, 816, 833, 954
Tru9I	TTAA	9 cut(s)	8, 98, 134, 363, 473, 486, 816, 833, 954
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	2 cut(s)	461, 548
TspDTI	ATGAA	2 cut(s)	525, 984
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	133
VneI	GTGCAC	3 cut(s)	203, 454, 656
XapI	RAATTY	1 cut(s)	604
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	537
XmiI	GTMKAC	2 cut(s)	386, 414
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.