Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

9747676 .. 9751816

Gene Structure 4141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTCTGTGGTGTCTATATATGCTCGATTTGTTTAAAGCAAATCAAGACTGGTACCACACTCAGAGTCTTAAGCATCCCCGAGGTGATTCAAAGGCCTTGCCAGAAACCTGATATTGAACCGGAAGAAGCGCCTTATGTGCACTTCCCAAAGCCCACAACTTATAGCAGGGCTGAATGTGCGTGCAATCCTGTGAGATATTTTGCAATTTTCTCGATGCAGAGGTCTGGGAGTGGTTGGTTTGAGACACTATTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTTAAAGTCAGGAGAAGTAACATGTCAACAATTACAGAGACTTTGGACAGAGTATACAATCTAGATTGGTTCAGTAGTGCCTCAAAGAATGAGTGCACAGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGATTGATGCAGAATCATGAACAAATAGTGGAGTACTTCAACACTCGAGGTGTTGCTGCTATCTTTCTCTTTCGAAGAAATCTGTTGCGTAGGTTGATCTCCGTGCTTGCAAATTCTTATGATCGAGAGGCAAAGCCACTGAATGGAACCCACAAATCTCACGTGCACTCTCATCAAGAGGCTGAGATACTTGCAAAATACAAGCCTAAAATCAATGCAACTTTGCTTATAGCCAACCTGAAGCAAGTTGAGAATACAACTGCCAAAGCATTGGAATATTTCAAGAACACCCGACATATTATCCTGTATTATGAGGATGTTGTTAAAAACCGCACTAAATTAAGAGACGTTCAAGATTTTCTCAAGGTTCCACAAAGGGATTTGAAGAGTCGTCAGGTGAAGATACACAAAGGTTCCTTATCTAATCAGATTGAGAATTGGGGTGATGTCCAAAAGGCACTTAATGGAACACATTATGAAAGCTTTCTCCATGCAGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

310

Amino Acids

35.64

Weight (kDa)

9.34

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	689
AcvI	CACGTG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	55, 464
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	7 cut(s)	92, 119, 256, 469, 712, 782, 814
AluBI	AGCT	3 cut(s)	276, 398, 912
AluI	AGCT	3 cut(s)	276, 398, 912
Alw21I	GWGCWC	3 cut(s)	144, 395, 597
Alw26I	GTCTC	3 cut(s)	239, 329, 768
Alw44I	GTGCAC	3 cut(s)	140, 391, 593
Ama87I	CYCGRG	2 cut(s)	80, 474
AoxI	GGCC	1 cut(s)	95
ApaLI	GTGCAC	3 cut(s)	140, 391, 593
ApeKI	GCWGC	2 cut(s)	398, 485
ApoI	RAATTY	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	912
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	97, 838, 884
AsuII	TTCGAA	1 cut(s)	502
AvaI	CYCGRG	2 cut(s)	80, 474
BaeGI	GKGCMC	3 cut(s)	144, 395, 597
BanI	GGYRCC	1 cut(s)	53
BbrPI	CACGTG	1 cut(s)	592
Bbv12I	GWGCWC	3 cut(s)	144, 395, 597
BbvI	GCAGC	2 cut(s)	385, 472
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BcoDI	GTCTC	3 cut(s)	239, 329, 768
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	399, 486
BlsI	GCNGC	2 cut(s)	400, 487
BmcAI	AGTACT	1 cut(s)	464
BmeT110I	CYCGRG	2 cut(s)	80, 474
BmiI	GGNNCC	4 cut(s)	55, 577, 798, 844
BmsI	GCATC	4 cut(s)	84, 207, 408, 426
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	3 cut(s)	75, 423, 751
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	76, 603
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	3 cut(s)	144, 395, 597
BseXI	GCAGC	2 cut(s)	385, 472
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	3 cut(s)	144, 395, 597
BsiHKCI	CYCGRG	2 cut(s)	80, 474
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	3 cut(s)	239, 329, 768
BsmBI	CGTCTC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	80, 474
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	144, 395, 597
Bsp143I	GATC	2 cut(s)	525, 550
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	75, 604
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	4 cut(s)	55, 577, 798, 844
BspMAI	CTGCAG	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	525, 550
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	184, 537
BstDEI	CTNAG	2 cut(s)	62, 612
BstF5I	GGATG	3 cut(s)	75, 423, 751
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	528, 553
BstMAI	GTCTC	3 cut(s)	239, 329, 768
BstMBI	GATC	2 cut(s)	525, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 179
BstNSI	RCATGY	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	3 cut(s)	144, 395, 597
BstV1I	GCAGC	2 cut(s)	385, 472
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstZ17I	GTATAC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	75, 423, 751
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	184, 537
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	54, 463
CviAII	CATG	3 cut(s)	319, 446, 920
CviQI	GTAC	2 cut(s)	54, 463
DdeI	CTNAG	2 cut(s)	62, 612
DpnI	GATC	2 cut(s)	527, 552
DpnII	GATC	2 cut(s)	525, 550
DraI	TTTAAA	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Eco147I	AGGCCT	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	689
Eco72I	CACGTG	1 cut(s)	592
Eco88I	CYCGRG	2 cut(s)	80, 474
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	3 cut(s)	322, 449, 923
FatI	CATG	3 cut(s)	318, 445, 919
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	399, 486
FokI	GGATG	3 cut(s)	62, 430, 758
Fsp4HI	GCNGC	2 cut(s)	399, 486
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	399, 486
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	322, 449, 923
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	910
HinfI	GANTC	4 cut(s)	66, 88, 442, 817
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	97, 838, 884
Hpy166II	GTNNAC	5 cut(s)	142, 324, 352, 393, 595
Hpy188I	TCNGA	2 cut(s)	65, 858
Hpy188III	TCNNGA	9 cut(s)	46, 214, 307, 359, 446, 554, 605, 712, 782
Hpy8I	GTNNAC	5 cut(s)	142, 324, 352, 393, 595
HpyCH4IV	ACGT	2 cut(s)	591, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 179
HpyF3I	CTNAG	2 cut(s)	62, 612
HpySE526I	ACGT	2 cut(s)	591, 777
Hsp92II	CATG	3 cut(s)	322, 449, 923
HspAI	GCGC	1 cut(s)	131
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	525, 550
Lsp1109I	GCAGC	2 cut(s)	385, 472
LweI	GCATC	4 cut(s)	84, 207, 408, 426
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	591, 777
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	527, 552
MboI	GATC	2 cut(s)	525, 550
MboII	GAAGA	4 cut(s)	137, 516, 826, 841
MhlI	GDGCHC	3 cut(s)	144, 395, 597
MluCI	AATT	5 cut(s)	207, 327, 541, 767, 865
MlyI	GAGTC	2 cut(s)	75, 826
MnlI	CCTC	7 cut(s)	76, 216, 388, 470, 550, 601, 736
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	8 cut(s)	35, 71, 300, 410, 423, 753, 770, 891
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	139, 179
NdeII	GATC	2 cut(s)	525, 550
NlaIII	CATG	3 cut(s)	322, 449, 923
NlaIV	GGNNCC	4 cut(s)	55, 577, 798, 844
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	97
PciI	ACATGT	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	2 cut(s)	88, 442
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	400, 487
PleI	GAGTC	2 cut(s)	74, 825
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
PpsI	GAGTC	2 cut(s)	74, 825
Ppu21I	YACGTR	1 cut(s)	592
PscI	ACATGT	1 cut(s)	318
PspCI	CACGTG	1 cut(s)	592
PspN4I	GGNNCC	4 cut(s)	55, 577, 798, 844
PspXI	VCTCGAGB	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	55, 464
RsaNI	GTAC	2 cut(s)	54, 463
SaqAI	TTAA	8 cut(s)	35, 71, 300, 410, 423, 753, 770, 891
SatI	GCNGC	2 cut(s)	399, 486
Sau3AI	GATC	2 cut(s)	525, 550
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	2 cut(s)	75, 826
SduI	GDGCHC	3 cut(s)	144, 395, 597
SfaNI	GCATC	4 cut(s)	84, 207, 408, 426
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	3 cut(s)	70, 474, 791
SmoI	CTYRAG	3 cut(s)	70, 474, 791
Sse9I	AATT	5 cut(s)	207, 327, 541, 767, 865
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	760
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	594, 780
TaqI	TCGA	5 cut(s)	26, 215, 475, 502, 553
TasI	AATT	5 cut(s)	207, 327, 541, 767, 865
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	2 cut(s)	88, 442
Tru1I	TTAA	8 cut(s)	35, 71, 300, 410, 423, 753, 770, 891
Tru9I	TTAA	8 cut(s)	35, 71, 300, 410, 423, 753, 770, 891
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	2 cut(s)	398, 485
TspDTI	ATGAA	2 cut(s)	462, 921
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	573
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	70
VneI	GTGCAC	3 cut(s)	140, 391, 593
XapI	RAATTY	1 cut(s)	541
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.