Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

16299335 .. 16303344

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1076200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGATGATCTCTGGTCCTTCAAGGATATATTTTTGATAAAGGCGCCGAAGAATTCCCCATTGGTGCTGCGGATGATTGTTGTGTTGTTTGCAATGGTCTGTGGTGTCTATATTTGCTCAATTTGTTTACAGCAGGTCAGCACCCGCACAAAATCTGGATTCTTAAATATTGAGGTGATTCAAAGGCCGTGTCCACAGCCTGATGTAGAGCCCGAAGAACTTCATTATATGCACTACCCAAAGCCCAAAACTTATAGCAGGGCTGAGTGTGCGTGCAATCCTGTGCAATACTTCGCAATTTTGTCGATGCAGAGGTCTGGGAGTGGGTGGTTTGAGACGCTATTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTGAAAGTTAGGAGAAGTAATATTTCAGCAATCGTTGAGACTTTGGACAGACTTTATAATCTAGATTGGTTGAGTAGCGCCTCAAAGAATGAATGCACCACTGCAGTTGGCTTGAAGTGGATGCTTAATCAGGGCTTGATGCAGCATCACGAAGAAATAGTAGAGTACTTCAATACACGGGGCGTTTCTGCTATCTTTCTCTTTCGAAGAAATCTGTTGCGGAGGATGATCTCTGTCCTTGCAAATTTGTATGACCGAGATAATAAGCTGCTTAATGGGACCCACAAGTCTCACGTGCATTCTCCTCACGAGGCAGAAATACTTGCAAAATACAAGCCTACAATCAATGCAACTTTGCTAATACCCAACCTGAAGCAAGTACAGGATACAACCACGAAAGCTTTGGAATATTTCAAGAGCACCCGTCATATTATTCTCTACTATGAGGATATCGTAAAAAACCGCACTAAGTTGCTTGATGTTCAAGATTTTCTTAAGGTTCCAAAAAGGGATTTAAAGAGTCGCCAGGTGAAGATACACAAAGGTAATTTGTCTAGTCAGATTGAGAATTGGGGCGACGTCCAAAAGACACTTACAGGAACACAGTATGAAAGCTTCCTCAGTGCGGATTATCGAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

345

Amino Acids

39.79

Weight (kDa)

9.3

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	676
AatII	GACGTC	1 cut(s)	972
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	5 cut(s)	73, 148, 610, 853, 1016
AcsI	RAATTY	2 cut(s)	55, 634
AcuI	CTGAAG	1 cut(s)	782
AcvI	CACGTG	1 cut(s)	685
AcyI	GRCGYC	2 cut(s)	47, 969
AfaI	GTAC	2 cut(s)	557, 771
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AflII	CTTAAG	1 cut(s)	884
AgsI	TTSAA	7 cut(s)	25, 185, 349, 505, 562, 805, 875
AjnI	CCWGG	1 cut(s)	915
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	369, 658, 791, 1005
AluI	AGCT	4 cut(s)	369, 658, 791, 1005
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	3 cut(s)	332, 422, 684
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	70, 532, 658
ApoI	RAATTY	2 cut(s)	55, 634
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	49, 470
AspS9I	GGNCC	2 cut(s)	18, 669
AsuHPI	GGTGA	2 cut(s)	190, 931
AsuII	TTCGAA	1 cut(s)	595
AvaII	GGWCC	2 cut(s)	18, 669
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BauI	CACGAG	1 cut(s)	698
BbrPI	CACGTG	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	57, 544, 645
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	917
BciVI	GTATCC	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	332, 422, 684
BfaI	CTAG	2 cut(s)	452, 945
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	2 cut(s)	50, 471
BfrI	CTTAAG	1 cut(s)	884
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	3 cut(s)	71, 533, 659
BlsI	GCNGC	3 cut(s)	72, 534, 660
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	2 cut(s)	18, 669
BmgT120I	GGNCC	2 cut(s)	18, 669
BmiI	GGNNCC	4 cut(s)	48, 670, 671, 891
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	4 cut(s)	300, 501, 519, 544
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu14I	TTCGAA	1 cut(s)	595
BsaAI	YACGTR	1 cut(s)	685
BsaHI	GRCGYC	2 cut(s)	47, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	917
BseGI	GGATG	3 cut(s)	81, 516, 621
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	258, 1024
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	57, 544, 645
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	3 cut(s)	332, 422, 684
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	488, 688
BsnI	GGCC	1 cut(s)	190
Bsp119I	TTCGAA	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	216, 812
Bsp143I	GATC	2 cut(s)	10, 618
BspACI	CCGC	5 cut(s)	73, 148, 610, 853, 1016
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	259, 1023
BspLI	GGNNCC	4 cut(s)	48, 670, 671, 891
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	127
BspT104I	TTCGAA	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	102
BssMI	GATC	2 cut(s)	10, 618
BssNI	GRCGYC	2 cut(s)	47, 969
BssSI	CACGAG	1 cut(s)	698
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	1 cut(s)	996
BstACI	GRCGYC	2 cut(s)	47, 969
BstAFI	CTTAAG	1 cut(s)	884
BstBAI	YACGTR	1 cut(s)	685
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	267, 858, 1010
BstF5I	GGATG	3 cut(s)	81, 516, 621
BstH2I	RGCGCY	2 cut(s)	50, 471
BstHHI	GCGC	2 cut(s)	49, 470
BstKTI	GATC	2 cut(s)	13, 621
BstMAI	GTCTC	3 cut(s)	332, 422, 684
BstMBI	GATC	2 cut(s)	10, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	915
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	57, 544, 645
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	81, 516, 621
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	489, 1018
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	2 cut(s)	49, 470
Cfr13I	GGNCC	2 cut(s)	18, 669
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	556, 770
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviQI	GTAC	2 cut(s)	556, 770
DdeI	CTNAG	3 cut(s)	267, 858, 1010
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	2 cut(s)	12, 620
DpnII	GATC	2 cut(s)	10, 618
DraI	TTTAAA	1 cut(s)	906
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	2 cut(s)	18, 669
Eco57I	CTGAAG	1 cut(s)	782
Eco72I	CACGTG	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	216
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	332
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FaqI	GGGAC	1 cut(s)	682
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	71, 533, 659
FokI	GGATG	3 cut(s)	88, 523, 628
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	71, 533, 659
FspBI	CTAG	2 cut(s)	452, 945
GlaI	GCGC	2 cut(s)	48, 469
GluI	GCNGC	3 cut(s)	71, 533, 659
HaeII	RGCGCY	2 cut(s)	50, 471
HaeIII	GGCC	1 cut(s)	190
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	2 cut(s)	49, 470
Hin1I	GRCGYC	2 cut(s)	47, 969
Hin6I	GCGC	2 cut(s)	47, 468
HinP1I	GCGC	2 cut(s)	47, 468
HindIII	AAGCTT	2 cut(s)	789, 1003
HinfI	GANTC	3 cut(s)	162, 181, 910
HphI	GGTGA	2 cut(s)	190, 931
Hpy166II	GTNNAC	2 cut(s)	131, 197
Hpy188I	TCNGA	1 cut(s)	951
Hpy188III	TCNNGA	6 cut(s)	159, 452, 539, 698, 805, 875
Hpy8I	GTNNAC	2 cut(s)	131, 197
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	2 cut(s)	31, 1023
HpyCH4III	ACNGT	1 cut(s)	996
HpyCH4IV	ACGT	2 cut(s)	684, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	267, 858, 1010
HpySE526I	ACGT	2 cut(s)	684, 969
Hsp92I	GRCGYC	2 cut(s)	47, 969
HspAI	GCGC	2 cut(s)	47, 468
KasI	GGCGCC	1 cut(s)	46
KflI	GGGWCCC	1 cut(s)	669
Kzo9I	GATC	2 cut(s)	10, 618
Lsp1109I	GCAGC	3 cut(s)	57, 544, 645
LweI	GCATC	4 cut(s)	300, 501, 519, 544
MaeI	CTAG	2 cut(s)	452, 945
MaeII	ACGT	2 cut(s)	684, 969
MalI	GATC	2 cut(s)	12, 620
MboI	GATC	2 cut(s)	10, 618
MboII	GAAGA	5 cut(s)	64, 230, 554, 609, 934
MhlI	GDGCHC	2 cut(s)	216, 812
MluCI	AATT	6 cut(s)	55, 123, 300, 634, 937, 958
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	8 cut(s)	169, 309, 481, 606, 694, 705, 829, 1019
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	5 cut(s)	167, 516, 663, 885, 905
MspCI	CTTAAG	1 cut(s)	884
MspR9I	CCNGG	1 cut(s)	917
Mva1269I	GAATGC	2 cut(s)	488, 688
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	1 cut(s)	272
NarI	GGCGCC	1 cut(s)	47
NdeII	GATC	2 cut(s)	10, 618
NlaIV	GGNNCC	4 cut(s)	48, 670, 671, 891
NspV	TTCGAA	1 cut(s)	595
PctI	GAATGC	2 cut(s)	488, 688
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	162, 181
PkrI	GCNGC	3 cut(s)	72, 534, 660
PleI	GAGTC	1 cut(s)	918
PluTI	GGCGCC	1 cut(s)	50
PmaCI	CACGTG	1 cut(s)	685
PmlI	CACGTG	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	918
Ppu21I	YACGTR	1 cut(s)	685
PpuMI	RGGWCCY	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	915
PspCI	CACGTG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	4 cut(s)	48, 670, 671, 891
PspPI	GGNCC	2 cut(s)	18, 669
PspPPI	RGGWCCY	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	557, 771
RsaNI	GTAC	2 cut(s)	556, 770
SaqAI	TTAA	5 cut(s)	167, 516, 663, 885, 905
SatI	GCNGC	3 cut(s)	71, 533, 659
Sau3AI	GATC	2 cut(s)	10, 618
Sau96I	GGNCC	2 cut(s)	18, 669
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	2 cut(s)	216, 812
SfaNI	GCATC	4 cut(s)	300, 501, 519, 544
SfcI	CTRYAG	1 cut(s)	492
SfoI	GGCGCC	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	595
SinI	GGWCC	2 cut(s)	18, 669
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	55, 123, 300, 634, 937, 958
SsiI	CCGC	5 cut(s)	73, 148, 610, 853, 1016
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	3 cut(s)	172, 412, 800
SspMI	CTAG	2 cut(s)	452, 945
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	1 cut(s)	996
TaiI	ACGT	2 cut(s)	687, 972
TaqI	TCGA	3 cut(s)	308, 595, 1024
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	6 cut(s)	55, 123, 300, 634, 937, 958
TatI	WGTACW	2 cut(s)	555, 769
TfiI	GAWTC	2 cut(s)	162, 181
Tru1I	TTAA	5 cut(s)	167, 516, 663, 885, 905
Tru9I	TTAA	5 cut(s)	167, 516, 663, 885, 905
TscAI	CASTG	2 cut(s)	496, 1018
TseI	GCWGC	3 cut(s)	70, 532, 658
TspDTI	ATGAA	3 cut(s)	215, 495, 1014
TspRI	CASTG	2 cut(s)	496, 1018
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	2 cut(s)	18, 669
XapI	RAATTY	2 cut(s)	55, 634
XbaI	TCTAGA	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	452, 945
ZraI	GACGTC	1 cut(s)	970
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.