Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

9847836 .. 9850188

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGATTGTTGTGTTGTTTGCAATGGTCTGTGGTGTCTATATTTGCTCAATTTGTTTACAGCAGGTCAGCACCCGCACAAAATCTGGATTCTTAAGTATTGAGGTGATTCAAAAGCCGTGTCCACAGCTTGATGTTGAGCCCGAAGAACTTCGTTATATGCACTACCCAAAGCCCAAAACTTATAGCAGGGCTGAGTGTGCGTGCAATCCTGTGCAATACTTCGCAATTTTGTCGATGCAGAGGTCTGGGAGTGGGTGGTTTGAGACACTATTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTGAAAGTTAGGAGAAGTAATATTTCAACAATCGTTGAGACTTTGGACAGACTTTATAATCTAGATTGGTTGAGTAGCGCCTCAAAGAATGAATGCACCGCTGCAGTTGGCTTGAAGTGGATGCTTAATCAGGGCTTGATGCAGCATCACGAAGAAATAGTAGAGTACTTCAATACACGGGGTGTTTCTGCTATCTTTCTCTTTCGAAGAAATCTGTTGCGGAGGATGATCTCTGTCCTTGCAAATTTGTATGACCGAGATAATAAGCTGCTTAATGGGACCCACAAGTCTCACGTGCATTCTCCTCACGAGGCAGAAATACTTGCAAAATACAAGCCTACAATCAATGCAACTTTGCTGATACCCAACCTGAAGCAAGTACAGGATACAACCACAAAAGCTTTGGAATATTTCAAGAGCACCCGTCATATTATCCTCTACTATGAGGATATCGTAAAAAACCGCACTAAGTTGCTTGATGTTCAAGATTTTCTTAAGGTTCCAAAAAGGGATTTAAAGAGTCGCCAGGTGAAGATACACAAAGGTAATTTGTCTAGTCAGATTGAGAATTGGGGCGACATCCAAAAGACACTTACAGGAACACAGTATGAAAGCTTCCTCAGTGCGGATTATCGAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

320

Amino Acids

36.89

Weight (kDa)

9.32

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AasI	GACNNNNNNGTC	1 cut(s)	601
Acc36I	ACCTGC	1 cut(s)	52
AciI	CCGC	5 cut(s)	73, 414, 535, 778, 941
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	707
AcvI	CACGTG	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	482, 696
AfiI	CCNNNNNNNGG	1 cut(s)	940
AflII	CTTAAG	2 cut(s)	91, 809
AgsI	TTSAA	7 cut(s)	110, 274, 342, 430, 487, 730, 800
AjnI	CCWGG	1 cut(s)	840
AluBI	AGCT	5 cut(s)	127, 294, 583, 716, 930
AluI	AGCT	5 cut(s)	127, 294, 583, 716, 930
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	3 cut(s)	257, 347, 609
ApeKI	GCWGC	3 cut(s)	416, 457, 583
ApoI	RAATTY	1 cut(s)	559
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	2 cut(s)	115, 856
AsuII	TTCGAA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BauI	CACGAG	1 cut(s)	623
BbrPI	CACGTG	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	403, 469, 570
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	1 cut(s)	842
BciVI	GTATCC	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	257, 347, 609
BfaI	CTAG	2 cut(s)	377, 870
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	396
BfrI	CTTAAG	2 cut(s)	91, 809
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	417, 458, 584
BlsI	GCNGC	3 cut(s)	418, 459, 585
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	3 cut(s)	595, 596, 816
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	4 cut(s)	225, 426, 444, 469
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu14I	TTCGAA	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	940
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	842
BseGI	GGATG	3 cut(s)	441, 546, 894
BseLI	CCNNNNNNNGG	1 cut(s)	940
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	183, 949
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	403, 469, 570
BsiHKAI	GWGCWC	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	940
BsmAI	GTCTC	3 cut(s)	257, 347, 609
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	2 cut(s)	413, 613
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	141, 737
Bsp143I	GATC	1 cut(s)	543
BspACI	CCGC	5 cut(s)	73, 414, 535, 778, 941
BspCNI	CTCAG	2 cut(s)	184, 948
BspLI	GGNNCC	3 cut(s)	595, 596, 816
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	520
BspTI	CTTAAG	2 cut(s)	91, 809
BsrDI	GCAATG	1 cut(s)	27
BssMI	GATC	1 cut(s)	543
BssSI	CACGAG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	1 cut(s)	921
BstAFI	CTTAAG	2 cut(s)	91, 809
BstBAI	YACGTR	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	192, 783, 935
BstF5I	GGATG	3 cut(s)	441, 546, 894
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	3 cut(s)	257, 347, 609
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	403, 469, 570
BsuI	GTATCC	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	441, 546, 894
BtsIMutI	CAGTG	1 cut(s)	943
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	481, 695
CviQI	GTAC	2 cut(s)	481, 695
DdeI	CTNAG	3 cut(s)	192, 783, 935
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DraI	TTTAAA	1 cut(s)	831
DraIII	CACNNNGTG	1 cut(s)	497
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	707
Eco72I	CACGTG	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	840
EcoRV	GATATC	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	141
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	1 cut(s)	607
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	417, 458, 584
FokI	GGATG	3 cut(s)	448, 553, 881
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	417, 458, 584
FspBI	CTAG	2 cut(s)	377, 870
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	3 cut(s)	417, 458, 584
HaeII	RGCGCY	1 cut(s)	396
HhaI	GCGC	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	2 cut(s)	714, 928
HinfI	GANTC	3 cut(s)	87, 106, 835
HphI	GGTGA	2 cut(s)	115, 856
Hpy166II	GTNNAC	2 cut(s)	56, 122
Hpy188I	TCNGA	1 cut(s)	876
Hpy188III	TCNNGA	6 cut(s)	84, 377, 464, 623, 730, 800
Hpy8I	GTNNAC	2 cut(s)	56, 122
HpyAV	CCTTC	1 cut(s)	948
HpyCH4III	ACNGT	1 cut(s)	921
HpyCH4IV	ACGT	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	192, 783, 935
HpySE526I	ACGT	1 cut(s)	609
HspAI	GCGC	1 cut(s)	393
KflI	GGGWCCC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	543
Lsp1109I	GCAGC	3 cut(s)	403, 469, 570
LweI	GCATC	4 cut(s)	225, 426, 444, 469
MaeI	CTAG	2 cut(s)	377, 870
MaeII	ACGT	1 cut(s)	609
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	4 cut(s)	155, 479, 534, 859
MhlI	GDGCHC	2 cut(s)	141, 737
MluCI	AATT	5 cut(s)	48, 225, 559, 862, 883
MlyI	GAGTC	1 cut(s)	844
MnlI	CCTC	9 cut(s)	94, 234, 406, 531, 619, 630, 754, 761, 944
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	5 cut(s)	92, 441, 588, 810, 830
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	2 cut(s)	91, 809
MspR9I	CCNGG	1 cut(s)	842
Mva1269I	GAATGC	2 cut(s)	413, 613
MvaI	CCWGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	1 cut(s)	543
NlaIV	GGNNCC	3 cut(s)	595, 596, 816
NspV	TTCGAA	1 cut(s)	520
PctI	GAATGC	2 cut(s)	413, 613
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	87, 106
PkrI	GCNGC	3 cut(s)	418, 459, 585
PleI	GAGTC	1 cut(s)	843
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	843
Ppu21I	YACGTR	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	840
PspCI	CACGTG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	840
PspN4I	GGNNCC	3 cut(s)	595, 596, 816
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	482, 696
RsaNI	GTAC	2 cut(s)	481, 695
SaqAI	TTAA	5 cut(s)	92, 441, 588, 810, 830
SatI	GCNGC	3 cut(s)	417, 458, 584
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	1 cut(s)	842
SduI	GDGCHC	2 cut(s)	141, 737
SfaNI	GCATC	4 cut(s)	225, 426, 444, 469
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	91, 809
SmoI	CTYRAG	2 cut(s)	91, 809
Sse9I	AATT	5 cut(s)	48, 225, 559, 862, 883
SsiI	CCGC	5 cut(s)	73, 414, 535, 778, 941
SspI	AATATT	2 cut(s)	337, 725
SspMI	CTAG	2 cut(s)	377, 870
StyD4I	CCNGG	1 cut(s)	840
TaaI	ACNGT	1 cut(s)	921
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	233, 520, 949
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	5 cut(s)	48, 225, 559, 862, 883
TatI	WGTACW	2 cut(s)	480, 694
TfiI	GAWTC	2 cut(s)	87, 106
Tru1I	TTAA	5 cut(s)	92, 441, 588, 810, 830
Tru9I	TTAA	5 cut(s)	92, 441, 588, 810, 830
TscAI	CASTG	1 cut(s)	943
TseI	GCWGC	3 cut(s)	416, 457, 583
TspDTI	ATGAA	2 cut(s)	420, 939
TspRI	CASTG	1 cut(s)	943
Vha464I	CTTAAG	2 cut(s)	91, 809
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	2 cut(s)	377, 870
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.